Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | no signal peptide or anchor |
| Exons | 2 |
| Model size | 188 |
| Cds size | 159 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930818.2655623-UTR-C-linearis_contig96:12221..12249 | 1622930818.2655623-UTR-C-linearis_contig96:12221..12249 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig96 12222..12249 - |
| 1690881265.7794023-UTR-C-linearis_contig96:12221..12249 | 1690881265.7794023-UTR-C-linearis_contig96:12221..12249 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig96 12222..12249 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930818.2924879-CDS-C-linearis_contig96:12249..12255 | 1622930818.2924879-CDS-C-linearis_contig96:12249..12255 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 12250..12255 - |
| 1690881265.7945123-CDS-C-linearis_contig96:12249..12255 | 1690881265.7945123-CDS-C-linearis_contig96:12249..12255 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 12250..12255 - |
| 1622930818.3098452-CDS-C-linearis_contig96:12383..12536 | 1622930818.3098452-CDS-C-linearis_contig96:12383..12536 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 12384..12536 - |
| 1690881265.8075938-CDS-C-linearis_contig96:12383..12536 | 1690881265.8075938-CDS-C-linearis_contig96:12383..12536 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 12384..12536 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17011.1 >prot_C-linearis_contig96.17011.1 ID=prot_C-linearis_contig96.17011.1|Name=mRNA_C-linearis_contig96.17011.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=53bp
PGGGSRRERRRRDKGVKDADAHDIFEGANVGARVTASTAADSAVNHEAQL
RV* back to topmRNA from alignment at C-linearis_contig96:12222..12536- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig96.17011.1 ID=mRNA_C-linearis_contig96.17011.1|Name=mRNA_C-linearis_contig96.17011.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at C-linearis_contig96:12222..12536- (Chordaria linearis ClinC8C monoicous)
CCGGGCGGAGGCAGCAGGAGGGAGCGGCGAAGGAGAGACAAGGGCGTGAA
GGACGCCGATGCCCACGACATATTCGAAGGGGCCAATGTCGGCGCCCGGG
TCACGGCCTCCACCGCCGCCGACTCTGCGGTGAACCATGAAGCGCAACTC
AGGGTGAGGGGGAAGGCAGCGTGGGTGAAGCCCAAGAGCACTGGCAGGTT
GTTTCGTTTGTGGTTTCAACCACTTGACATCCTATAACCTAGCCCCGGCC
TCCGTTCTACCCATCATGTTGTCCGCCGCAGGTCTAGCCAAGCCGGGCAT
TCTTTCGCTAGCCAG back to topCoding sequence (CDS) from alignment at C-linearis_contig96:12222..12536- >mRNA_C-linearis_contig96.17011.1 ID=mRNA_C-linearis_contig96.17011.1|Name=mRNA_C-linearis_contig96.17011.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at C-linearis_contig96:12222..12536- (Chordaria linearis ClinC8C monoicous)
CCGGGCGGAGGCAGCAGGAGGGAGCGGCGAAGGAGAGACAAGGGCGTGAA
GGACGCCGATGCCCACGACATATTCGAAGGGGCCAATGTCGGCGCCCGGG
TCACGGCCTCCACCGCCGCCGACTCTGCGGTGAACCATGAAGCGCAACTC
AGGCCGGGCGGAGGCAGCAGGAGGGAGCGGCGAAGGAGAGACAAGGGCGT
GAAGGACGCCGATGCCCACGACATATTCGAAGGGGCCAATGTCGGCGCCC
GGGTCACGGCCTCCACCGCCGCCGACTCTGCGGTGAACCATGAAGCGCAA
CTCAGGGTCTAGGTCTAG back to top
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