mRNA_C-linearis_contig95.17005.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig95.17005.1 vs. uniprot
Match: A0A6H5L876_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L876_9PHAE) HSP 1 Score: 277 bits (708), Expect = 3.050e-79 Identity = 131/170 (77.06%), Postives = 147/170 (86.47%), Query Frame = 1 Query: 70 TMAASLRYRIPDDDISGYLLGAWKRNLEWREFGPGFQHVRTSNSLVVLEPCPDAALEPGTTLLDWRFGTDPAEMQLGFSMQFF-SGEQVGEASVEWTYKGRVCRGDFSPAAAVLSLLFRDDQGLVSNAVYRAVDANTMAVCITEVDGRHTPVMQYGYMCRLSGEEITSES 576
TMAASLRYR+PDD+I YLLG+WKR+LEWREFGPGFQHVRTSNSLV+L PC DAA+EPGTT+LDWRFG+ P E +LG+SMQFF E GE SVEW Y GRVCRGDFS AAAVLSL FRDD G+VSNA YRAVDANTMAVC+ +VD RHTPVMQ+GYMCRLSG+E T +S
Sbjct: 1054 TMAASLRYRLPDDNIYEYLLGSWKRSLEWREFGPGFQHVRTSNSLVMLVPCQDAAVEPGTTMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRLSGQETTPDS 1223
BLAST of mRNA_C-linearis_contig95.17005.1 vs. uniprot
Match: UPI000644B31A (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644B31A) HSP 1 Score: 154 bits (389), Expect = 4.270e-41 Identity = 78/191 (40.84%), Postives = 112/191 (58.64%), Query Frame = 1 Query: 10 TSSPLAYGRHLGDTHQGSRETMAASLRYRIPDDDISGYLLGAWKRNLEWREFGPGFQHVRTSNSLVVLEPCPDAALEPGTTLLDWRFGTD--PAEMQLGFSMQFFSGEQVGEASVEWTYKGRVCRGDFSPAAAVLSLLFRDDQGLVSNAVYRAVDANTMAVCITEVDGRHTPVMQYGYMCRLSGEEITSES 576
T SP+ H G T+ GS++++ L+Y+IPD+D YL+G WKRNLEW+EFG F H+RTSN++V++E P + L W FG +EM+ G+SM+F S + E +EWTY G +C G + PA L F V YR +D NTM+VC+ EVD + TP +QYG M ++ +E+
Sbjct: 2 TRSPV----HNGTTNDGSQDSIPKPLKYQIPDNDFYSYLIGTWKRNLEWKEFGGLFPHIRTSNTVVMIEEFPKYDTDTNARHLKWSFGKSLSKSEMRFGYSMKFLSAPKNIETYLEWTYIGTICHGKYLPATNTAVLNFFQPLSTVL-VTYRIIDENTMSVCVVEVDEKQTPSIQYGNMYKIDPALYAAEN 187
BLAST of mRNA_C-linearis_contig95.17005.1 vs. uniprot
Match: M4C1U8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C1U8_HYAAE) HSP 1 Score: 140 bits (354), Expect = 3.400e-36 Identity = 70/165 (42.42%), Postives = 98/165 (59.39%), Query Frame = 1 Query: 85 LRYRIPDDDISGYLLGAWKRNLEWREFGPGFQHVRTSNSLVVLEPCPDAALEPGTTLLDWRFGTDPAEMQLG--FSMQFFSGEQVGEASVEWTYKGRVCRGDFSPAAAVLSLLFRDDQGLVSNAVYRAVDANTMAVCITEVDGRHTPVMQYGYMCRLSGEEITSE 573
+RY +P D YL G WKRNLEW FG F+H+RT+N++V +E DAA +P T L W FG + L +++QF EQ +EW+++G C G F P A+V +L F + +V+ YR +DA+TMAVCI +VD HTP +QYG M R+ + E
Sbjct: 9 MRYDVPSGDFCSYLKGFWKRNLEWHHFGSSFKHLRTTNNVVFIEEDLDAARQPNTQFLRWSFGRTHKKQDLASAYTVQFIPDEQ--STFMEWSFEGVTCHGIFKPEASVATLNFCLQESMVT-ITYRVLDADTMAVCIVDVDSEHTPTIQYGNMYRIDPSKYERE 170
BLAST of mRNA_C-linearis_contig95.17005.1 vs. uniprot
Match: A0A1V9ZX25_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZX25_9STRA) HSP 1 Score: 139 bits (351), Expect = 9.250e-36 Identity = 70/159 (44.03%), Postives = 100/159 (62.89%), Query Frame = 1 Query: 79 ASLRYRIPDDDISGYLLGAWKRNLEWREFGPGFQHVRTSNSLVVLEPCPDAALEPGTTLLDWRFGTDPAEMQL--GFSMQFFSGEQVGEASVEWTYKGRVCRGDFSPAAAVLSLLFRDDQGLVSNAVYRAVDANTMAVCITEVDGRHTPVMQYGYMCRL 549
++ RY +P+ D+ YLLG WKR LEWR FG ++H+RTSN++V++E AA +PGT L W FG + +L +++QF EQ +EW+++G C G F P ++V F + LV+ YR +DANTMAVCI +VD HTP +QYG M R+
Sbjct: 2 SATRYDVPNGDLCSYLLGTWKRTLEWRNFGSTYKHLRTSNNVVLIEEDTMAAKQPGTRFLKWSFGRGIRKNELTNAYTIQFIPDEQG--MFMEWSFEGVTCHGLFKPESSVAIFNFCLQESLVT-ITYRILDANTMAVCIIDVDSEHTPTIQYGNMYRI 157
BLAST of mRNA_C-linearis_contig95.17005.1 vs. uniprot
Match: A0A5D6YF76_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YF76_9STRA) HSP 1 Score: 139 bits (350), Expect = 1.410e-35 Identity = 69/169 (40.83%), Postives = 100/169 (59.17%), Query Frame = 1 Query: 76 AASLRYRIPDDDISGYLLGAWKRNLEWREFGPGFQHVRTSNSLVVLEPCPDAALEPGTTLLDWRFGTDPAEMQL--GFSMQFFSGEQVGEASVEWTYKGRVCRGDFSPAAAVLSLLFRDDQGLVSNAVYRAVDANTMAVCITEVDGRHTPVMQYGYMCRLSGEEITSES 576
++ LR+ +P D +L G WKRNLEWR FG FQH+R +N++V++E DAA +P T L W FG L +++QF EQ +EW+++G C G F P A+V F + +V+ YR +DANTMAVCI +VD HTP +QYG M R++ + ++
Sbjct: 9 SSPLRFEVPRGDFGAFLQGFWKRNLEWRSFGGAFQHLRATNNVVLIEEDVDAAHQPNTRFLKWSFGRTHKRQDLVSAYTIQFIPDEQG--TFMEWSFEGVTCHGVFKPEASVAIFNFCLQESMVT-ITYRILDANTMAVCIVDVDSEHTPTIQYGNMYRINPSKYDKDA 174
BLAST of mRNA_C-linearis_contig95.17005.1 vs. uniprot
Match: D3B0W8_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B0W8_POLPP) HSP 1 Score: 139 bits (351), Expect = 4.310e-35 Identity = 68/158 (43.04%), Postives = 96/158 (60.76%), Query Frame = 1 Query: 67 ETMAASLRYRIPDDDISGYLLGAWKRNLEWREFGPGFQHVRTSNSLVVLEPCPDAALEPGTTLLDWRFGT--DPAEMQLGFSMQFFSGEQVGEASVEWTYKGRVCRGDFSPAAAVLSLLFRDDQGLVSNAVYRAVDANTMAVCITEVDGRHTPVMQYG 534
+++ LRY+IPD+D YL+G WKRNLEW+EFG F H+RTSN++V++E +P L W FG + +E++ G+SM+ + E +EWTY G VC G + P+ V L F Q V YR +D NTM+VC+ EVD + TP +QYG
Sbjct: 37 DSVPKPLRYQIPDNDFYSYLIGTWKRNLEWKEFGGLFPHIRTSNTVVMIEEYRGYDNDPSARHLKWSFGKSLEKSELRFGYSMKCVQAPKNTETYLEWTYIGTVCHGKYLPSTNVAVLNFFQPQSTVL-VTYRVIDENTMSVCVVEVDKKQTPSIQYG 193
BLAST of mRNA_C-linearis_contig95.17005.1 vs. uniprot
Match: F4PUJ3_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PUJ3_CAVFA) HSP 1 Score: 137 bits (346), Expect = 1.160e-34 Identity = 71/167 (42.51%), Postives = 98/167 (58.68%), Query Frame = 1 Query: 43 GDTHQGS-RETMAASLRYRIPDDDISGYLLGAWKRNLEWREFGPGFQHVRTSNSLVVLEPCPDAALEPGTTLLDWRFGTDPA--EMQLGFSMQFFSGEQVGEASVEWTYKGRVCRGDFSPAAAVLSLLFRDDQGLVSNAVYRAVDANTMAVCITEVDGRHTPVMQYG 534
G QG ++ + LRY+IPD+D YLLG WKRNLEW+EFG F H+RTSN++V++E + +P + L W FG + EM+ G+ M+ S + E +EWTY G +C G + PA L F V YR VD NTM+VC+ EVD + TP +Q+G
Sbjct: 33 GSNDQGKDKDEVPKPLRYQIPDNDFYTYLLGTWKRNLEWKEFGGLFPHIRTSNTVVMIEESTNFNSDPSSRFLKWSFGKSLSKNEMRFGYLMKMVSAPKNIETYLEWTYIGTLCHGKYLPATNCAVLNFFQPLSTVL-VTYRVVDENTMSVCVVEVDEKQTPSIQFG 198
BLAST of mRNA_C-linearis_contig95.17005.1 vs. uniprot
Match: K3WP12_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WP12_GLOUD) HSP 1 Score: 136 bits (343), Expect = 1.450e-34 Identity = 69/166 (41.57%), Postives = 99/166 (59.64%), Query Frame = 1 Query: 58 GSRETMAASLRYRIPDDDISGYLLGAWKRNLEWREFGPGFQHVRTSNSLVVLEPCPDAALEPGTTLLDWRFGTDPA--EMQLGFSMQFFSGEQVGEASVEWTYKGRVCRGDFSPAAAVLSLLFRDDQGLVSNAVYRAVDANTMAVCITEVDGRHTPVMQYGYMCRL 549
G + + +RY I D D G+L G WKRNLEWR FG F+H+R++N++V +E DAA +P T L W FG ++ +++QF EQ +EW+++G C G F P ++V F + +V+ YR +DANTMAVCI +VD HTP +QYG M R+
Sbjct: 3 GGQVAASNPVRYEIADGDFCGFLKGFWKRNLEWRHFGGSFKHLRSTNNVVFIEEDLDAAHQPNTQFLKWSFGRTHKIEDLVSAYTIQFIPDEQG--TFMEWSFEGVTCHGVFKPESSVAIFNFCLQESMVT-ITYRILDANTMAVCIVDVDSEHTPTIQYGNMYRI 165
BLAST of mRNA_C-linearis_contig95.17005.1 vs. uniprot
Match: A0A024UKI4_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UKI4_9STRA) HSP 1 Score: 136 bits (342), Expect = 1.800e-34 Identity = 67/159 (42.14%), Postives = 98/159 (61.64%), Query Frame = 1 Query: 79 ASLRYRIPDDDISGYLLGAWKRNLEWREFGPGFQHVRTSNSLVVLEPCPDAALEPGTTLLDWRFGTD--PAEMQLGFSMQFFSGEQVGEASVEWTYKGRVCRGDFSPAAAVLSLLFRDDQGLVSNAVYRAVDANTMAVCITEVDGRHTPVMQYGYMCRL 549
++ R+ + D D + YL+G WKR LEWR FG F H+RT+N++VV+E AA +P TT L W FG E+ + +++QF + +EW+++G +C G F P A+V F + +V+ YR +DANTMAVCI +VD HTP +QYG M R+
Sbjct: 2 STTRFDVKDGDFAAYLVGTWKRTLEWRNFGSSFGHLRTTNNVVVIEEDTTAAKQPNTTFLKWSFGRGLRKNELTVAYTIQFIPDNKG--TFMEWSFEGAMCHGLFKPEASVAIFNFCLHESMVT-ITYRILDANTMAVCIVDVDSDHTPTIQYGNMYRI 157
BLAST of mRNA_C-linearis_contig95.17005.1 vs. uniprot
Match: D0P0D5_PHYIT (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=D0P0D5_PHYIT) HSP 1 Score: 136 bits (342), Expect = 2.030e-34 Identity = 70/165 (42.42%), Postives = 98/165 (59.39%), Query Frame = 1 Query: 85 LRYRIPDDDISGYLLGAWKRNLEWREFGPGFQHVRTSNSLVVLEPCPDAALEPGTTLLDWRFGTDPAEMQLG--FSMQFFSGEQVGEASVEWTYKGRVCRGDFSPAAAVLSLLFRDDQGLVSNAVYRAVDANTMAVCITEVDGRHTPVMQYGYMCRLSGEEITSE 573
+RY +P+ D YL G WKRNLEWR FG F+H+R++N++V +E DAA +P T L W FG + L +++QF EQ +EW+++G C G F A V L F + +V+ YR +DANTMAVCI +VD HTP +QYG M R++ + E
Sbjct: 12 VRYDVPNGDFCAYLKGFWKRNLEWRRFGASFKHLRSTNNIVFIEEDLDAAGQPNTQFLRWSFGRTLKQQDLSSAYTVQFIPDEQG--TFMEWSFEGVTCHGVFKLEANVAILNFCLQESMVT-ITYRVLDANTMAVCIVDVDSEHTPTIQYGNMYRINPSKYERE 173 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.17005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.17005.1 >prot_C-linearis_contig95.17005.1 ID=prot_C-linearis_contig95.17005.1|Name=mRNA_C-linearis_contig95.17005.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=170bp MAASLRYRIPDDDISGYLLGAWKRNLEWREFGPGFQHVRTSNSLVVLEPCback to top mRNA from alignment at C-linearis_contig95:531423..537088- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig95.17005.1 ID=mRNA_C-linearis_contig95.17005.1|Name=mRNA_C-linearis_contig95.17005.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5666bp|location=Sequence derived from alignment at C-linearis_contig95:531423..537088- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig95:531423..537088- >mRNA_C-linearis_contig95.17005.1 ID=mRNA_C-linearis_contig95.17005.1|Name=mRNA_C-linearis_contig95.17005.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at C-linearis_contig95:531423..537088- (Chordaria linearis ClinC8C monoicous)back to top |