mRNA_C-linearis_contig95.16981.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig95.16981.1 vs. uniprot
Match: D7FLY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY5_ECTSI) HSP 1 Score: 226 bits (577), Expect = 2.810e-71 Identity = 125/193 (64.77%), Postives = 144/193 (74.61%), Query Frame = 2 Query: 251 MVDPAESSKRLEMHVKRMSRVQVSEEPTPD-GMRSNMASPDVAYVGSMLGEEEGFPTGVSRMRRRVLEAPLGPKIGYHELEDEKEEGDEEWMTGEASQLSGAGTRGSSNWVLKIMLPIFLIIGIIILHNWWTDIKKHASNAAKGVGDVFDRRALTLALQKEQEEQARPAEGAGQGL--GQAGAKAREAGLPDK 820
MVD SSKRLEM VK +S V V+EEP P +NMASPDV ++GSM+GEE+ FPTG +MRRRV+E PLG KIGYHELEDEKE+ DEEWMTGEASQ+SG GTRGS+NWVLK++ PI LI+GII +HNWWTD+K H SNAAK V DVFDRRAL E+EE AEG GQG G+ G E LPDK
Sbjct: 1 MVDREASSKRLEMRVKTLSSVTVAEEPNPSRDAATNMASPDVDHIGSMVGEEDAFPTG--QMRRRVIEPPLGSKIGYHELEDEKEDADEEWMTGEASQVSGGGTRGSNNWVLKVLFPILLIVGIICMHNWWTDVKYHVSNAAKAVSDVFDRRALL-----EEEE----AEGRGQGRFSGEEGGAVSEP-LPDK 181
BLAST of mRNA_C-linearis_contig95.16981.1 vs. uniprot
Match: A0A6H5JNP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP4_9PHAE) HSP 1 Score: 220 bits (561), Expect = 9.970e-69 Identity = 123/192 (64.06%), Postives = 141/192 (73.44%), Query Frame = 2 Query: 251 MVDPAESSKRLEMHVKRMSRVQ-VSEEPTPD-GMRSNMASPDVAYVGSMLGEEEGFPTGVSRMRRRVLEAPLGPKIGYHELEDEKEEGDEEWMTGEASQLSGAGTRGSSNWVLKIMLPIFLIIGIIILHNWWTDIKKHASNAAKGVGDVFDRRALTLALQKEQEEQARPAEGAGQGLGQAGAKAREAGLPDK 820
MVD SSKRLEM VK +S V V+EEP P +NMASPDV ++GSM+GEE+ FPTG MRRRV+E PLG KIGYHELEDEKE+ DEEWMTGEASQ+SG GTRGS+NW+LK++ PI LI+GII +HNWWTD+K H SNAAK V DVFDRRAL E+EE AEG GQG A A LPDK
Sbjct: 1 MVDREASSKRLEMRVKSLSSVTAVAEEPNPSRDAATNMASPDVDHIGSMVGEEDAFPTG---MRRRVIEPPLGSKIGYHELEDEKEDADEEWMTGEASQVSGGGTRGSNNWMLKVVFPILLIVGIICMHNWWTDVKYHVSNAAKAVSDVFDRRALL-----EEEE----AEGRGQGRFSEEEGAVSAPLPDK 180 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.16981.1 >prot_C-linearis_contig95.16981.1 ID=prot_C-linearis_contig95.16981.1|Name=mRNA_C-linearis_contig95.16981.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=190bp MVDPAESSKRLEMHVKRMSRVQVSEEPTPDGMRSNMASPDVAYVGSMLGEback to top mRNA from alignment at C-linearis_contig95:291860..296738+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig95.16981.1 ID=mRNA_C-linearis_contig95.16981.1|Name=mRNA_C-linearis_contig95.16981.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4879bp|location=Sequence derived from alignment at C-linearis_contig95:291860..296738+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig95:291860..296738+ >mRNA_C-linearis_contig95.16981.1 ID=mRNA_C-linearis_contig95.16981.1|Name=mRNA_C-linearis_contig95.16981.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at C-linearis_contig95:291860..296738+ (Chordaria linearis ClinC8C monoicous)back to top |