mRNA_C-linearis_contig95.16970.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig95.16970.1 vs. uniprot
Match: A0A6H5KYN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYN5_9PHAE) HSP 1 Score: 215 bits (548), Expect = 1.280e-55 Identity = 182/411 (44.28%), Postives = 201/411 (48.91%), Query Frame = 1 Query: 580 MPDFLPADVLYMVCCSGYANPCK---LRMVCLSVSNACREQSPWTLVAAPGLPLELLSRHLRGGDRLLLRQHQPGTRAPVRAEDATAAAAGRGRCSDSGSDSDWVGHAASNAVVPEGEXXXXRKGKGDPSSAP------NSFGHAAGDAIIAGGDRSSEPRSTTAAAYGTPSHPADATAPLSISRLSPRRLIQRVVIDRSISLEGVVWPARVTSLEMGEEGVRVS-----------EVADGGVRWGRVFAGGRVSATRITRACPEAALAXXXXXXXXXXXXXXRFTRAIKIVGDSAPVVDATLEPEANRAPAPTATETFWAGKVGGTCFDRPLREVSLPPALVHLELLGPFNGPLEGVEWPLSLETLVLGELFNQSLSRDNDSDGGGVLLPRGLKSLTLGSAFDRCLDDVA 1752 MP L D+L +V CSGYA P L VCL+V NACREQ+PWTL AAPG+P LLS HLRGGDRLLL++ R D WVGHAA AV XXXX N+ AG + G SRLSPR IQRVV+D S+SL+GVVWPAR+T+LEMGEE VA G + G S XXXXXXXXXXXXXX AT FWAGK G+CFD PLREVSLPP L+HLELLGPFN LEGV WP SLETLVLG+LFN SL G GV+LPRGLKSLTLGSAFD LD VA Sbjct: 1 MPGILAGDILAIVWCSGYAGPAAATPLETVCLAVCNACREQTPWTLRAAPGMPPSLLSWHLRGGDRLLLQRFDQRGRXXXXXXXXXXX-----------HDRGWVGHAAKPAVTTAXXXXXXXXXXXXXXXXXXXXXXXNTVDGKAGVVAVRTGVEEXXXXXXXXXXXXXXXXXXXXXXXAGASRLSPRANIQRVVVDLSLSLDGVVWPARLTALEMGEEXXXXXXXXXXXXXXXXSVAHPGNLENKPSRRGHCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------ATARFWAGKPPGSCFDTPLREVSLPPTLLHLELLGPFNDSLEGVAWPPSLETLVLGDLFNGSL-------GDGVVLPRGLKSLTLGSAFDMSLDAVA 381
BLAST of mRNA_C-linearis_contig95.16970.1 vs. uniprot
Match: D7FNE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE9_ECTSI) HSP 1 Score: 181 bits (460), Expect = 1.830e-44 Identity = 159/391 (40.66%), Postives = 181/391 (46.29%), Query Frame = 1 Query: 580 MPDFLPADVLYMVCCSGYANPC----KLRMVCLSVSNACREQSPWTLVAAPGLPLELLSRHLRGGDRLLL-RQHQPGTRAPVRAEDATAAAAGRGRCSDSGSDSDWVGHAASNAVVPEGEXXXXRKGKGDPSSAPNSFGHAAGDAIIAGGDRSSEPRSTTAAAYGTPSHPADATAPLSI-------------SRLSPRRLIQRVVIDRSISLEGVVWPARVTSLEMGEEGVRVSEVADGGVRWGRVFAGGRVSATRITRACPEAALAXXXXXXXXXXXXXXRFTRAIKIVGDSAPVVDATLEPEANRAPAPTATETFWAGKVGGTCFDRPLREVSLPPALVHLELLGPFNGPLEGVEWPLSLETLVLGELFNQSLSRDNDSDGGGVLLPRG 1698 MP L +D+L +V SGYA P L VCL+V NACREQ+PW L AAPG+P LLS HLRGGDRLLL R Q G D WVGH A AV R+ AG ++ G T SRLSPR IQRVV+ +SL+GVVWPAR+T+LEMGEE XXXXXXXXXXXXXX + A+ EP A AT FWAGK G+CFD PLREVSLPP L+HLELLGPFN PLEG+ WP SLETLVLG+LFN +L G GV+LPRG Sbjct: 1 MPGILASDILAIVWVSGYAGPAAAAASLETVCLAVCNACREQTPWALRAAPGMPPWLLSWHLRGGDRLLLQRSAQRGXXXXXXXXXXXXX------------DRGWVGHTALPAVT----TAATREXXXXXXXXXXXXNGKAGVIVVRAGVEEDRDGLDTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLSPRANIQRVVVGLGLSLDGVVWPARLTALEMGEEXXXXXXXXX------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITAS-EPATIGAATAAATARFWAGKPPGSCFDTPLREVSLPPTLLHLELLGPFNDPLEGIAWPPSLETLVLGDLFNGTL-------GDGVVLPRG 355 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.16970.1 >prot_C-linearis_contig95.16970.1 ID=prot_C-linearis_contig95.16970.1|Name=mRNA_C-linearis_contig95.16970.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=733bp MPDFLPADVLYMVCCSGYANPCKLRMVCLSVSNACREQSPWTLVAAPGLPback to top mRNA from alignment at C-linearis_contig95:201364..207421- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig95.16970.1 ID=mRNA_C-linearis_contig95.16970.1|Name=mRNA_C-linearis_contig95.16970.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6058bp|location=Sequence derived from alignment at C-linearis_contig95:201364..207421- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig95:201364..207421- >mRNA_C-linearis_contig95.16970.1 ID=mRNA_C-linearis_contig95.16970.1|Name=mRNA_C-linearis_contig95.16970.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4398bp|location=Sequence derived from alignment at C-linearis_contig95:201364..207421- (Chordaria linearis ClinC8C monoicous)back to top |