mRNA_C-linearis_contig94.16955.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig94.16955.1 vs. uniprot
Match: D7G4U9_ECTSI (PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4U9_ECTSI) HSP 1 Score: 600 bits (1547), Expect = 2.860e-200 Identity = 442/865 (51.10%), Postives = 521/865 (60.23%), Query Frame = 3 Query: 27 MDRRLQSSLEKKTRVG-WQTRVYRLERGYLSGWADVSSAAAHEEPSRVTCLFQGDQVATLVDQGDKRFKLDFSWDGAKTLQLRANNSAMKDAWVSLLHATLKEAESQIKATGSVFAYGGTAKHEQDEAYEEAAYLKTNRFLAAYVVDEQSRASYVNDLLNEGFQYVGDRAGGGGDVRRACAGARAAIAELLALMEDFKEEMDGVEELRRGKQSGEDSSSHQLGPSVAAPKIQRFCEEHMSLVGRTISSRLMLELSPFMDSSVAGTSAAPTDSTRAELVATRKNLDEAYEATDRIVILGTRAWFMDIRDCFLDCAALEQASAAPPSPPPAIATQTTGLGSPPRGPAEVNS---TAADEPASSLPQ-GSTRRSSSKALLQVSSALSAAKAATKGGASRMGSSLSMKGRGTGKVTADAGPAAAAESKANSERDGGAGGGGRVSSRAGVSMSIPGVFRRGSRGPPEKEQTP--AAPSSPSPPTNVSPRGS---------------------VNRGSGGKASKPPDIEERERSDLFGGSSHSPGNXXXXXXXXXXXXXXXXXXXXXXAGQTGADAGSSSSAVASEPRTAASGTSQSXXXXXXXXXXXXXXXXXXXXXKEKREFAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPAASTAAQIGDPAVSVSRDAEAAPKPKAGGGKRRFAGGGFSGPTPAASQ----PTAQLPGDNPFAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSGGRGADEAVPAWAASAXXXXXXXXXXXXXXXXEPPSSGGKGGSSGKSYGLGLAPPSRADQGRQVAAENSPFMTVDPAAPSARRPSQRRPGESGSRRAFGGGERLF 2525
MDR LQS LEK+TRVG WQ+RVYRLERGYLS W D S AA ++P+R CLF +QVA L DQGDKRFKLDF WDG+KTLQLR++NSAMK AWV LL ATL EA SQI+A GSVFAYGG A+H +DEAYEEA YLKTNRFLAAYVVDEQSRASY+NDLLN+GF +VGDRAG D ACAG+R+AIAELLAL EDF +EM GVEELRRG Q G ++S QL +V APKI+RFCEE+MSLVGRTISSRLMLELSPFM++SVAG+S+APT+STRAELV TR+ LDEAY AT+++VILGTRAWF+DIR+ FLDCA LE AS+ PP+PPP +ATQT A+ + + P GS RR S+KALLQVS+A + AKAATK GA+++G+S + GR TGK A A A + S D AG GG+V+S GVSMSIPGVF+R SR E E+ P+ P +SPRGS V G GGK P + EE++RSDLFGGSS SP G+T + +SS++ A P ++ XXXXXXXXX XXXXXXXXXXXXXXXXXXXXXX + +T A G + A PK K GGKRRFAGG FSGP SQ P+ + G+NPFA G + R +E +PAWA A +P S G GLAPP Q+AA+ SPFM +P AP RRPSQRRPGE+GSRRAFGGGERLF
Sbjct: 1 MDRSLQSGLEKRTRVGAWQSRVYRLERGYLSAWPDAVSVAAKQDPTRTECLFLDNQVAVLTDQGDKRFKLDFPWDGSKTLQLRSSNSAMKQAWVDLLRATLDEAGSQIRAIGSVFAYGGAAQHAKDEAYEEATYLKTNRFLAAYVVDEQSRASYINDLLNDGFHHVGDRAGSERDAHNACAGSRSAIAELLALTEDFMKEMRGVEELRRGTQ-GSETSEGQLDGAVTAPKIERFCEEYMSLVGRTISSRLMLELSPFMETSVAGSSSAPTESTRAELVGTRRRLDEAYAATEQVVILGTRAWFVDIREYFLDCAGLEIASSRPPTPPPEVATQTAAFSXXXXXXXXXXXXXXAGAEAQSRTTPSAGSARRPSAKALLQVSNAFAVAKAATKDGATKIGTSWNATGRSTGKAKNSASDADGAPVRGGSPADQ-AGAGGKVNSTRGVSMSIPGVFKRASRTGSEMEERSDLGKPADGRTPVTMSPRGSGGPTSVAGNQAVQSSDAEVGVVMEGRGGKPVSPAETEEQQRSDLFGGSSRSPS---------ASPRAHGGKNSPVRRGKTESVLNASSASTAVPP------SASEHVLSALVNPDSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGNMKTDSRDGSTMVNTTVADEGQ----LKSVPAAIPKSKPSGGKRRFAGGVFSGPPQPPSQLNAAPSDGVQGENPFA-GASDATTMRREGTGATHKSVVGANETVSSSIRREELPKPPREVEEPLPAWATEAGANESVPDWAANSSMDKP---------SKPPSGYGLAPPXXXXXXXQLAADKSPFMQREPDAPPKRRPSQRRPGETGSRRAFGGGERLF 834 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig94.16955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig94.16955.1 >prot_C-linearis_contig94.16955.1 ID=prot_C-linearis_contig94.16955.1|Name=mRNA_C-linearis_contig94.16955.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=834bp MDRRLQSSLEKKTRVGWQTRVYRLERGYLSGWADVSSAAAHEEPSRVTCLback to top mRNA from alignment at C-linearis_contig94:475193..480296- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig94.16955.1 ID=mRNA_C-linearis_contig94.16955.1|Name=mRNA_C-linearis_contig94.16955.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5104bp|location=Sequence derived from alignment at C-linearis_contig94:475193..480296- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig94:475193..480296- >mRNA_C-linearis_contig94.16955.1 ID=mRNA_C-linearis_contig94.16955.1|Name=mRNA_C-linearis_contig94.16955.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5004bp|location=Sequence derived from alignment at C-linearis_contig94:475193..480296- (Chordaria linearis ClinC8C monoicous)back to top |