mRNA_C-linearis_contig94.16954.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig94.16954.1 vs. uniprot
Match: A0A6H5JW30_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW30_9PHAE) HSP 1 Score: 563 bits (1451), Expect = 2.380e-184 Identity = 322/567 (56.79%), Postives = 400/567 (70.55%), Query Frame = 2 Query: 278 EERYGVTDYRTIKPWVYAARVLLRPKRRARMSVGTLHVKVIEARGLMARDGVLRRSDPYVNLNLSGRYLSNGQEWSEQFRIKEQTRVVKYSLSPVWNESFSLPVRRAGAFLRVELWDWDRGISDDPLGSFEVKIGQELLSQKAMDMWFVLDTPRDLNKSSSSPFGVKTTWKTAQEQPSEIEEEKLXXXXXXXXXXXXXXXSSVL--SPGWNPPLGKQYKRKSKGRNQDGGGKSTFEHNHACPEEEPDVCEACIQYRRDHFGEVRLELRFEFDEFGETCSHIWPEEPPRPVDTTFSPNRVYYNALLLQQLARSYVSCMEEVSATVHWVHPWKSLSWFIALAVMLLHPCLLIVVTNVSLAWNVVAAYLEYNFARLEEVGGGVEPS-SNAGVSRGRRRTSEGSFKVPKKSLLPPIDDYGDENLKEMYRTVRRTKKLPLVVEEIGRRTFAGDALPAQRQVETIGRVLMKVRRRLRPVKLRSLVQTLIALSAHMILQLWLYRTSRFHLYLLGCCCGVFAYNFYAWRGRAFIDGVKEAVRCRQLRMSLAN-TGTISTGSNAISGTASSEQTPF 1966 EERYGV DYR+IKPW++ ARVLL+ KR+A +S+G LHVKV+EARGLMARDG+L +SDPYVNL L+GRYLS GQEWSE+ RI ++TR +KY+L+PVWNE+FSLP+RRAGA LRVELWDWDRG D+ LGS EV I +EL SQK +D W+VLD P DL S S+ + E SE+EEE XXXXXXXXXXXXXXX S W LG+ KG + +H+H P EE CEACI+ RR FGEVRL+LR EF+EF ETCSH+WPEEPP P + TFSPNRVYYNA+LL+QLA+ Y+ CM+ SA VHWVHPWKSL+WF+AL VMLLHPCLL+VV N +L + YLE+ A+ E+ V+ +A S + + E + KKSLLPPID D ++ MY TVR+TKKLP VVE+IGRR+FA L QRQVETIG+ L KVRRR P+ + ++ L +HM+LQLWLYRTSRFHLY + C GVF YNFY+WRGRAFI V+ A + RQ R++LA+ T ST + +++G ++ T F Sbjct: 35 EERYGVKDYRSIKPWMFPARVLLKAKRKATISIGVLHVKVVEARGLMARDGMLGKSDPYVNLALTGRYLSTGQEWSERLRICDRTRTIKYTLNPVWNETFSLPIRRAGAILRVELWDWDRGSCDESLGSVEVSIDKELRSQKTIDTWYVLDAPWDLKDSPSAVPDAHISRLAELEAFSEMEEEXXXXXXXXXXXXXXXXXXXXXXSSLRWTSVLGR------KGATAE----DRIDHDHG-PREESPSCEACIEVRRKRFGEVRLQLRVEFNEFAETCSHLWPEEPPEPAEMTFSPNRVYYNAMLLRQLAQPYIGCMQGASAIVHWVHPWKSLAWFVALVVMLLHPCLLMVVINGALMRIAIRGYLEHFAAQREDDEDYVDVEMGHAAKSAAKAKAKEN---ISKKSLLPPIDAPEDRKMQAMYLTVRKTKKLPAVVEQIGRRSFAKAGLSPQRQVETIGKALTKVRRRFHPLGATQCLSMVVILVSHMLLQLWLYRTSRFHLYFMLICVGVFGYNFYSWRGRAFILAVQAARQSRQTRIALASLTCADSTHTASVAGVDATPTTTF 587
BLAST of mRNA_C-linearis_contig94.16954.1 vs. uniprot
Match: D7G4V0_ECTSI (Protein kinase C, beta 1, like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V0_ECTSI) HSP 1 Score: 492 bits (1267), Expect = 2.580e-160 Identity = 292/524 (55.73%), Postives = 350/524 (66.79%), Query Frame = 2 Query: 227 RPMQRGVNLTARG----GNDPEERYGVTDYRTIKPWVYAARVLLRPKRRARMSVGTLHVKVIEARGLMARDGVLRRSDPYVNLNLSGRYLSNGQEWSEQFRIKEQTRVVKYSLSPVWNESFSLPVRRAGAFLRVELWDWDRGISDDPLGSFEVKIGQELLSQKAMDMWFVLDTPRDLNKSSSSPFGVKTTWKTAQEQPSEIEEEKLXXXXXXXXXXXXXXXS--SVLSPGWNPPLGKQYKRKSKGRNQDGGGKSTFEHNHACPEEEPDVCEACIQYRRDHFGEVRLELRFEFDEFGETCSHIWPEEPPRPVDTTFSPNRVYYNALLLQQLARSYVSCMEEVSATVHWVHPWKSLSWFIALAVMLLHPCLLIVVTNVSLAWNVVAAYLEYNFARLEEVGGGVEPSSNAGVSRGRRRTSEGSFK----VPKKSLLPPIDDYGDENLKEMYRTVRRTKKLPLVVEEIGRRTFAGDALPAQRQVETIGRVLMKVRRRLRPVKLRSLVQTLIALSAHMILQLWLYRTSR 1768 R Q G + G G EERYGV DYR+I PW++ ARVLL+ KR+A +S+G LHVKV+EARGLMARDG+L +SDPYVNL L+GRYLS GQEWSE+ RI ++TR +KY+L+PVWNE+FSLPVRRAGA LRVELWDWDRG DD LGS EV I +EL SQK E SE+EEE XXXXXXXXXXXXXXX + S W LG+ KG + +H+H P EE CEACI+ RR FGEVRL+LRFEF+EF ETCSH+WPEEPP P + TFSPNRVYYNA+LL+QLA+ Y+ CM+E SA VHWVHPWKSL+WFIAL VMLLHPCLLIVV N +L + YL++ A+ E+ +A V G S K + KKSLLPPID D ++ MY TVR+TKKLP VVE+IGRRTFA L QRQVETIG+ L KVRRR P++ + ++AL++HM+LQLWLYRTSR Sbjct: 14 RTFQTGTSRDTHGRINAGELYEERYGVKDYRSINPWMFPARVLLKAKRKATISIGVLHVKVVEARGLMARDGMLGKSDPYVNLALTGRYLSTGQEWSERLRICDRTRTIKYTLNPVWNETFSLPVRRAGAVLRVELWDWDRGSCDDSLGSVEVSIDKELRSQKL-------------------------------EAFSEMEEETXXXXXXXXXXXXXXXXXXXTTSSLRWTSVLGR------KGATAE----DRIDHDHG-PREESPSCEACIEVRRKRFGEVRLQLRFEFNEFAETCSHLWPEEPPEPAEMTFSPNRVYYNAMLLRQLAQPYIGCMQEASAIVHWVHPWKSLAWFIALVVMLLHPCLLIVVINGALIRIAILGYLDHFAAQRED------NEDDADVEMGHAAKSAAKAKAKENISKKSLLPPIDAPEDRKMQAMYLTVRKTKKLPAVVEQIGRRTFAKAGLSPQRQVETIGKALTKVRRRFHPLRATQCLSMVVALASHMLLQLWLYRTSR 489
BLAST of mRNA_C-linearis_contig94.16954.1 vs. uniprot
Match: D7FQN3_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN3_ECTSI) HSP 1 Score: 204 bits (518), Expect = 6.390e-56 Identity = 121/295 (41.02%), Postives = 152/295 (51.53%), Query Frame = 2 Query: 272 DPEERYGVTDYRTIKPWVYAARVLLRPKRRARMSVGTLHVKVIEARGLMARDGVLRRSDPYVNLNLSGRYLSNGQEWSEQFRIKEQTRVVKYSLSPVWNESFSLPVRRAGAFLRVELWDWDRGISDDPLGSFEVKIGQELLSQKAMDMWFVLDTPRDLNKSSSSPFGVKTTWKTAQEQPSEIEEEKLXXXXXXXXXXXXXXXSSVLSPGWNPPLGKQYKRKSKGRNQDGGGKSTFEHNHACPEEEPDVCEACIQYRRDHFGEVRLELRFEFDEFGETCSHIWPEEPP-RPVDTTF 1153 D + YG DYR+I W + A LL+P RA+M++GTLH KV+EARGL++RD RSDP+ L L+GRYLS+GQEWSE R++E+TRV+K+SL+PVWNE FSLPVRRAGA LR+ LWDW+ I DDPLG EVK+G +LL+QK GV P EP I+ RR+ +GEVRL+LRFEF+E ETCS+IWPEEPP RP+ F Sbjct: 46 DEADNYGWMDYRSISGWKFPAWPLLQPSTRAKMTIGTLHAKVVEARGLISRD-FAGRSDPFAELELTGRYLSHGQEWSEPLRVREKTRVIKFSLNPVWNEEFSLPVRRAGAVLRIRLWDWNASIPDDPLGHIEVKMGGDLLAQKD---------------------GV-------------------------------------------------------------------------PLHEPS-----IEERRESYGEVRLQLRFEFNELAETCSYIWPEEPPKRPLKARF 240
BLAST of mRNA_C-linearis_contig94.16954.1 vs. uniprot
Match: A0A6H5JRL3_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL3_9PHAE) HSP 1 Score: 216 bits (549), Expect = 9.950e-54 Identity = 137/333 (41.14%), Postives = 189/333 (56.76%), Query Frame = 2 Query: 440 RSDPYVNLNLSGRYLSNGQEWSEQFRIKEQTRVVKYSLSPVWNESFSLPVRRAGAFLRVELWDWDRGISDDPLGSFEVKIGQELLSQKAMDMWFVLDTPRDLNKSSSSPFGVKTTWKTAQEQPSEIEE--EKLXXXXXXXXXXXXXXXSSVLSPGWNPPLGKQYKRKSKGRNQDG--------------------GGKSTFEHNHACPEEEPDVCEACIQYRRDHFGEVRLELRFEFDEFGETCSHIWPEEPPRPVDTTFSPNRVYYNALLLQQLARSYVSCMEEVSATVHWVHPWKSLSWFIALAVMLLHPCLLIVVTNVSLAWNVVAAYLE 1372 +SDPYV L L+GRYLS+GQEWSE+ R+K++TR++K +L+PVW+E F LPVRRAGA L+VE+WDWDR DDPLG FEV IG+ELLSQ+ + E+ + ++ + XXXXXXXX + SP +P +G S G N G G +H+H E+E C+ CI+ RR FGEVRL L +++DEF E CSH WPEEP +P FSPN++Y ++ ++ + YV+ ++EV A W P +SL W +A+ ML+ P +LIVV NV+L V+AYL+ Sbjct: 8 KSDPYVKLCLTGRYLSHGQEWSERLRLKDRTRIIKTTLNPVWDEEFCLPVRRAGAVLKVEVWDWDRSSPDDPLGHFEVAIGEELLSQQEKXXXXXXXXXXXXXXXXXXXRADASKGNGGGEEATAVDGGGDMDTVDDADXXXXXXXXGGEINSPPESP-IGLGLDDGSGGGNGGGYSLSGXXXXXXXXXXXXXXXGSMGPSDHSHQS-EQEARACDVCIERRRKRFGEVRLILWYQYDEFAEMCSHTWPEEPLKPPKIVFSPNQLYRKGMVFWEMFKPYVTFLKEVDAINSWGRPRRSLMWMLAVVGMLVVPPVLIVVVNVALMHIAVSAYLK 338
BLAST of mRNA_C-linearis_contig94.16954.1 vs. uniprot
Match: D7FL70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL70_ECTSI) HSP 1 Score: 104 bits (260), Expect = 2.190e-19 Identity = 104/416 (25.00%), Postives = 161/416 (38.70%), Query Frame = 2 Query: 896 GWNPPLGKQYKRKSKGRNQDGGGKSTFEHNHACPEEEPDVCEACIQYRRDHFGEVRLELRFEFDEFGETCSHIWPEEPPRPVDTTFSPNRVYYNALLLQQLARSYVSCMEEVSATVHWVHPWK--------------------------------------------------SLSWFIALAVMLLH-----------------------------------------------------PCLLIVVTNVS--------------------LAWNVVAAYLEYNFARLEEVGGGVEPS--SNAGVSRGRRRTSEGSFKVPKKSLLPPIDDYGDENLKEMYRTVRRTKKLPLVVEEIGRRTFAGDALPAQRQVETIGRVLMKVRRRLRPVKLRSLVQTLIALSAHMILQLWLYRTSR 1768 G++ G+Q G + GG +H+H E+E C+ CI+ RR FGEVRL L +++DEF E CSH WPEEP +P FSPN++Y ++ ++ R YV+ ++EV A W P K S + F +L+ L+ P + T ++ L+ + AA N VG GV AGV++G ++ G+ K LLP + D L+E+Y + TK++P VV ++G+ F Q ++ +G +L+ +R+R P++ R L T+ AL AHM+LQLWLY + R Sbjct: 181 GYSASGGRQGSSTKLGFGRKGGSMGPSDHSHQS-EQEARACDVCIERRRKRFGEVRLILWYQYDEFAEMCSHTWPEEPLKPPKIVFSPNQLYRKGMVFWEMFRPYVTFLKEVDAISSWGRPRKRQGGVFGARRIRFDVGQEGGXXXXXXXXXXXQLSMXXXXXXXXXXRSQRKSSTTFFSLSRSLIRGNRGAPIRRRVSDPDPVTANAVGSASAGVALRNSSSAPSRTAPWRAKAPRSAPPSTITTPTTMARTSIFAASSGASQPPSTPRALSISNAAAIDSNNSYTGPGVGSGVSRDVVHAAGVAKGGVISAAGAGSKKIKKLLP-VRGTRDPELRELYERLGGTKRVPAVVNQLGKVFFTKSGPSIQLGLDKMGMMLIMIRQRFHPLRARDLGLTMTALFAHMVLQLWLYVSGR 594
BLAST of mRNA_C-linearis_contig94.16954.1 vs. uniprot
Match: D7FQN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN4_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 2.030e-17 Identity = 56/133 (42.11%), Postives = 79/133 (59.40%), Query Frame = 2 Query: 1502 IDDYGDENLKEMYRTVRRTKKLPLVVEEIGRRTFAGDALPAQRQVETIGRVLMKVRRRLRPVKLRSLVQTLIALSAHMILQLWLYRTSRFHLYLLGCCCGVFAYNFYAWRGRAFIDGVKEAVRCRQLRMSLAN 1900 D Y DE + + +V +TKKLP VE+IG++ A D Q +E G +LM VRR P++++ L+ T+ + AH +LQL LY S LY L G+FA NFYAWRGRAF V+ A + R+ R S+ + Sbjct: 7 FDPYADEQMDAILASVSKTKKLPSAVEQIGKKALAKDGRRLQNDLEFWGVILMLVRRLFHPLEVKVLLGTIGIIVAHTLLQLGLYFASWIRLYFLLVLVGLFASNFYAWRGRAFFLAVQAARQSRRTRWSITH 139
BLAST of mRNA_C-linearis_contig94.16954.1 vs. uniprot
Match: UPI000645238A (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000645238A) HSP 1 Score: 71.2 bits (173), Expect = 9.100e-9 Identity = 42/130 (32.31%), Postives = 70/130 (53.85%), Query Frame = 2 Query: 368 MSVGTLHVKVIEARGLMARDGVLRRSDPYVNLNLSGRYLSNGQEWSEQFRIKEQTRVVKYSLSPVW-NESFSLPVRRAGAFLRVELWDWDRGISDDPLGSFEVKIGQELLSQKAMDM-WFVLDTPRDLNK 751 M +GTL++ V+E RGL +D SDPY + + K++T+ +K++L+P W +E+F +P+ F+ VE++DWDR SDDP+G + I S + M WF L+ +++ K Sbjct: 1 MRIGTLYISVLEGRGLSPKDSN-GASDPYCVVIAGDK--------------KKKTKAIKHTLNPKWESENFEMPIEHLCQFVYVEVYDWDRFSSDDPMGMATIPIAMIYDSTTSETMQWFPLEPMKNVTK 115
BLAST of mRNA_C-linearis_contig94.16954.1 vs. uniprot
Match: A0A3P6QG12_DIBLA (C2 domain-containing protein n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P6QG12_DIBLA) HSP 1 Score: 66.6 bits (161), Expect = 1.870e-8 Identity = 48/139 (34.53%), Postives = 76/139 (54.68%), Query Frame = 2 Query: 380 TLHVKVIEARGLMARD--GVLRRSDPYVNLNLSGRYLSNGQEWSEQFRIKEQTRVVKYSLSPVWNESFSLPVRRAGAFLR--VELWDWDRGISDDPLGSFEVKIGQELLSQKAMDMWFVLDTPRDLNKSSSSPFGVKTT 784 TL V V EA+ L+ D G+ +DPYV L L+G +E+ R K +T+V+K SL+P WNE+F++ V R +E+WDWDR DD +G+ + + + ++ +D WF L R+ + S P +T+ Sbjct: 36 TLFVHVKEAKNLVPMDPNGL---ADPYVKLKLTGD--------NEKSR-KLKTKVIKASLNPEWNETFTIDVNAEDESKRLMIEMWDWDRASRDDFMGALSFGVSE--IIKRPVDCWFRL-LSREEGEFYSIPCSEETS 159
BLAST of mRNA_C-linearis_contig94.16954.1 vs. uniprot
Match: A0A3P7FNF6_WUCBA (Uncharacterized protein (Fragment) n=1 Tax=Wuchereria bancrofti TaxID=6293 RepID=A0A3P7FNF6_WUCBA) HSP 1 Score: 67.8 bits (164), Expect = 8.600e-8 Identity = 41/125 (32.80%), Postives = 69/125 (55.20%), Query Frame = 2 Query: 377 GTLHVKVIEARGLMARDGVLRR---SDPYVNLNLSGRYLSNGQEWSEQFRIKEQTRVVKYSLSPVWNESFSLPVRRA-GAFLRVELWDWDRGISDDPLGSFEVKIGQELLSQKAMDMWFVLDTPR 739 G L +K++EAR L RD + SDPY +++ ++ +T+ + +L+PVWNE F V +A G LR+EL+D+D+G SD+ LG+ + + + ++++D WF LD R Sbjct: 231 GVLRLKIVEARNLENRDIKFTKNMASDPYCQIHVGSQFY--------------RTKTIDNNLNPVWNEYFEFVVDQANGQKLRMELFDYDKGSSDEELGTLTIDL-INVKEKRSLDDWFPLDACR 340
BLAST of mRNA_C-linearis_contig94.16954.1 vs. uniprot
Match: A0A654GWR5_9CEST (Uncharacterized protein n=2 Tax=Diphyllobothriidae TaxID=28843 RepID=A0A654GWR5_9CEST) HSP 1 Score: 66.6 bits (161), Expect = 1.730e-7 Identity = 45/120 (37.50%), Postives = 68/120 (56.67%), Query Frame = 2 Query: 380 TLHVKVIEARGLMARD--GVLRRSDPYVNLNLSGRYLSNGQEWSEQFRIKEQTRVVKYSLSPVWNESFSLPVRRAGAFLR--VELWDWDRGISDDPLGSFEVKIGQELLSQKAMDMWFVL 727 TL V V EA+ L+ D G+ +DPYV L L+G +E+ R K +T+VVK SL+P WNE+F++ V R +E+WDWDR DD +G+ + + + ++ +D WF L Sbjct: 36 TLFVHVKEAKNLVPMDPNGL---ADPYVKLKLTGD--------NEKTR-KLKTKVVKASLNPEWNETFTIDVNAEDESKRLMIEMWDWDRASRDDFMGALSFGVSE--IIKRPVDCWFRL 141 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig94.16954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig94.16954.1 >prot_C-linearis_contig94.16954.1 ID=prot_C-linearis_contig94.16954.1|Name=mRNA_C-linearis_contig94.16954.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=893bp MYETTKKTQRLQDTTKLTVPWVAPARCRRQLLRFCFTLASATAGATGTGGback to top mRNA from alignment at C-linearis_contig94:460944..472559+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig94.16954.1 ID=mRNA_C-linearis_contig94.16954.1|Name=mRNA_C-linearis_contig94.16954.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=11616bp|location=Sequence derived from alignment at C-linearis_contig94:460944..472559+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig94:460944..472559+ >mRNA_C-linearis_contig94.16954.1 ID=mRNA_C-linearis_contig94.16954.1|Name=mRNA_C-linearis_contig94.16954.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5358bp|location=Sequence derived from alignment at C-linearis_contig94:460944..472559+ (Chordaria linearis ClinC8C monoicous)back to top |