mRNA_C-linearis_contig93.16925.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig93.16925.1 vs. uniprot
Match: A0A6H5KPP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP3_9PHAE) HSP 1 Score: 546 bits (1408), Expect = 1.790e-173 Identity = 325/538 (60.41%), Postives = 374/538 (69.52%), Query Frame = 3 Query: 729 FTFEDGERKLLVDALHAIGDGGIDQVDTMSMKDLMELHKKISKGQTGSSLARKEKFAEKFRALFEDGDCSKLFLGGRGGVATAGMVCVFTPAGVMVAWKLLPTPESVNDVVDFVRWFKVKPAFLCFDAACKLVPGLEKYCEGLLDVDGGRLHRDDKGHAVHAALGHVGNNRDSATRDIEACTQFKDRERTTDTEDVYAVLETANPQPGLQCDVDTYEAVLRAAEYFPSVGVPSRQAATKALDALHRRGVRVLSLFEVLVFTYYWHLQHRAGAAGGXXXXXXXXXXXXXXXXGVGRLAVGVNGWVVHGTPGGGEEGGGVTHALAADFLRPVLVGLSGSRQASNLSRLPSWLDPKWIADENVETGLQGYAKAKEDFVVDGLKPLTSQARGRGRAIAVRGGIGFGRGVFALKGLELRLAPNAAPHATTTDD-KVAGYGAIFHDTRHQGHEGPPFPRKTRMGPDGHHESNHGEACREKYSGMTTCRDIAGVNLTRHESDHGRKAVYFRSINNMTLANFTYSLNVINELQNRGYNEMHLSVLL 2339
+TF R L+ AL G GGI+ VD M +DL +LHK + + S L+RKE + KFR LF DGDCSK FLGGRGGVATAGMVCVFTPAGVMVAWK+LPT ES NDVVDF+RW KVKP L +DAACKLV LEKYC LL G L RD +G+ V L HVGNNR+SATR+ A T F+D RTTD ED+YAV+ETA P+PGLQ +VD+ EA+ AA++ VG S+ AT+ALDALHR GVRVLSLFEVLVFTYYWH + A XXXXXXXXXXXXXXXX LSGSR+AS +S LPSWL I++ +ETGL+ YAKAK DFVVD LKPLT++ R R AIAVRGGIGFGR V+ALK LEL LA NAAPHATTT++ KV GY AIFHDTR++ EG P R+ R+GPDGHHE+NHG CR+ YSG+TTC+DI GVNLTRHESDHG K +Y RSINNMT NFTYSL+VINELQNR YN L LL
Sbjct: 582 YTFVPPNRADLLGALEKEG-GGINLVDEMPAEDLKKLHKVVFGTLSASGLSRKEDYITKFRPLFHDGDCSKQFLGGRGGVATAGMVCVFTPAGVMVAWKVLPTAESPNDVVDFMRWMKVKPYLLSYDAACKLVKELEKYCPALLKDKTGVLQRDGEGNVVFPELVHVGNNRNSATRETAART-FQDLPRTTDREDMYAVIETAGPRPGLQSEVDSDEALFWAAKFSKVVGGQSKLTATRALDALHRDGVRVLSLFEVLVFTYYWHRKAAGDATXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------XXXXXXXXXXXXXXXLSGSRRASRVSALPSWLHASCISEGELETGLRRYAKAKVDFVVDCLKPLTAEVRERA-AIAVRGGIGFGRDVYALKELELSLARNAAPHATTTEEGKVVGYDAIFHDTRYKNFEGDPIKREMRIGPDGHHENNHGPDCRKLYSGLTTCKDIGGVNLTRHESDHGVKVMYLRSINNMTFPNFTYSLSVINELQNRKYNRQLLDALL 1099
BLAST of mRNA_C-linearis_contig93.16925.1 vs. uniprot
Match: A0A6H5JLJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLJ6_9PHAE) HSP 1 Score: 375 bits (962), Expect = 3.280e-116 Identity = 240/405 (59.26%), Postives = 280/405 (69.14%), Query Frame = 3 Query: 693 GVKTARAVV-KTAFTFEDGERKLLVDALHAIGDGGIDQVDTMSMKDLMELHKKISKGQTGSSLARKEKFAEKFRALFEDGDCSKLFLGGRGGVATAGMVCVFTPAGVMVAWKLLPTPESVNDVVDFVRWF---KVKPAFLCFDAACKLVPGLEKYCEGLLDVDGGRLHRDDKGHAVHAALGHVGNNRDSATRDIEACTQFKDRERTTDTEDVYAVLETANPQPGLQCDVDTYEAVLRAAEYFPSVGVPSRQAATKALDALHRRGVRVLSLFEVLVFTYYWHLQHRAGAAGGXXXXXXXXXXXXXXXXGVGRLAVGVNGWVVHGTPGGGEEGGGVTHALAADFLRPVLVGLSGSRQASNLSRLPSWLDPKWIADENVETGLQGYAKAKEDFVVDGLKPLTSQARGR 1895
G+KT RAV K+ +TF R L+ AL G GGI+ V M +DL +LHK + + S L+RKE + KFRALF DGDCSK FLGGRGGVATAGMVCVFTPAGV+VAWK+LPT ES N+VVDF+RW KVKP L +DAACKLV GLEKYC LL+ G L RD +G+ V L HVGNNR+SATR+ A T F+D +RTTD ED+ AV+ETA P PGLQ +VD EA+L AA + VG S+ AT+ALDALHR GV LSLFEVLVFTYYWH + A XXXXXXXXXXXXXXXX WV P G+EGGG THA AA FL VLVGLSGSRQAS +S LPSWL I + + TGL+ YAKAK DF+VD LK LT++A+ R
Sbjct: 47 GIKTDRAVAPKSVYTFVPPNRADLLGALEKKG-GGINLVHEMPAEDLKKLHKVVFGTLSASGLSRKEDYIAKFRALFHDGDCSKQFLGGRGGVATAGMVCVFTPAGVVVAWKVLPTAESPNNVVDFMRWMRWMKVKPYLLSYDAACKLVKGLEKYCPALLEDKTGVLQRDGEGNVVFPELAHVGNNRNSATRETAART-FQDLQRTTDREDMNAVIETAGPWPGLQSEVDPDEALLWAANFSKVVGGRSKLTATRALDALHRDGVCELSLFEVLVFTYYWHRKAAGDTAXXXXXXXXXXXXXXXXXX--------XXXWVAR-APLEGDEGGGFTHADAAGFLLRVLVGLSGSRQASKVSALPSWLHATCIPEGELATGLRRYAKAKVDFIVDCLKALTAEAKER 440
BLAST of mRNA_C-linearis_contig93.16925.1 vs. uniprot
Match: A0A6H5JWX4_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWX4_9PHAE) HSP 1 Score: 169 bits (427), Expect = 2.540e-40 Identity = 96/222 (43.24%), Postives = 129/222 (58.11%), Query Frame = 2 Query: 8 YTVSQSTCT-CGGELKPVGD--VWAKLVTDAPQVRHVVVERRTCSACGTSAWASDSWRKTHVFNYDNTLLVDLSLLYNCLEQFFAGMPIQNFLYAYLKPLSKNTRWLPENPAFASVLDKNSRFYVQLTNAFLAFLALTDFSFEFRCFQWGSHPDILTADACVKMSVNQMTIALADASRPETILDFDMSMMLLKLSLVSMVFFQ-ERVNFVLGGSRPWVGRLP 661
YT SQ TC+ CG + V A +T+ P + V V C CG ASD+WR+T +FNY+N+ LV+LS+LY CLE F G I F +L+PL+ + W+ NP + L + L N FLAFLAL D +FEFRC+ WG P ILT DAC+K++ N +T+ ASRPE ++ D+ M LL+LS+VS +F RV FV+G VG P
Sbjct: 243 YTTSQKTCSGCGRDFHTENQHTVVATRLTEGPGMSKVNVHTNECETCGIHGLASDNWRETGLFNYNNSYLVELSVLYRCLEAFTRGTTISAFFETFLEPLASDLVWIKANPDLSKRLANGTNLLNVLNNIFLAFLALIDHTFEFRCWMWGKFPPILTFDACMKIACNFVTLGQVIASRPEQDINTDLVMNLLQLSMVSPAWFGGTRVQFVVGAGET-VGNAP 463
BLAST of mRNA_C-linearis_contig93.16925.1 vs. uniprot
Match: A0A6H5L2N5_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2N5_9PHAE) HSP 1 Score: 157 bits (396), Expect = 1.830e-38 Identity = 94/234 (40.17%), Postives = 129/234 (55.13%), Query Frame = 2 Query: 8 YTVSQSTCT-CGGELKPVG--DVWAKLVTDAPQVRHVVVERRTCSACGTSAWASDSWRKTHVFNYDNTLLVDLSLLYNCLEQFFAGMPIQNFLYAYLKPLSKNTRWLPENPAFASVLDKNSRFYVQLTNAFLAFLALTDFSFEFRCFQWGSHPDILTADACVKMSVNQMTIALADASRPETILDFDM------------SMMLLKLSLVSMVFFQ-ERVNFVLGGSRPWVGRLP 661
YT SQ C+ CG + +V A +T+ + V V C CG ASD+WR+T +FNY+N+ LV+LS+LY CLE F G I F +L+PL+ + W+ NP + L + L N FLAFLAL D +FEFRC+ WG P ILT DAC+K++ N +T+ ASRPE ++ D+ +M LL+LS+VS +F RV FV+G VG P
Sbjct: 76 YTTSQKACSGCGRDFPAENQHNVVATRLTEGSGMSKVNVHTNECETCGIHGLASDNWRETGLFNYNNSYLVELSILYRCLEAFTRGTTISAFFETFLEPLASDLVWIKANPDLSKRLANGTNLLNVLNNIFLAFLALIDHTFEFRCWMWGKFPPILTFDACMKIACNFVTLGQVIASRPEQDINTDLXXXXXXXXXXVLAMNLLQLSMVSPAWFGGTRVQFVVGAGET-VGNAP 308
BLAST of mRNA_C-linearis_contig93.16925.1 vs. uniprot
Match: A0A6H5KXC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC8_9PHAE) HSP 1 Score: 159 bits (403), Expect = 5.040e-38 Identity = 132/394 (33.50%), Postives = 187/394 (47.46%), Query Frame = 3 Query: 1215 ALGHVGNNRDSATRDIEAC-TQFKDRERTTDTEDVYAVLETANPQPGLQCDVDTYEAVLRAAEYFPSVGVPSRQAATKALDALHRR--GVRVLSLFEVLVFTYYWHLQHRAGAAGGXXXXXXXXXXXXXXXXGVGRLAVGVNGWVV----HGTPGGG---EEGGGVTHALAADFLRPVLVGLSGSRQASNLSRLPSWLDPKWIADENVET-------GLQGYAKAKEDFVVDGLKPLTSQARGRGRAIAVRGGIGF-GRGVFALKGLELRLAPNAAPHATTTDDKVAGYGAIFHDTRHQGHEGPPFPRKTR-----MGPDGHHESNHGEACREKYSGMTTCRDIAGVNLTRHESDHGRKAVYFRSINNMTLANFTYSLNVINELQNRGYNEMHL 2327
AL H+G+N SA+ +EA + DVYA+ A G Q V+ Y+ + + E V AAT+A+ AL R G+RVLSLF+ LVFTY W L++ A G L +G GW + HG G E V+ A LR VL+ G+R L WL+ D + T GL YA AK F+ DG++P+ + R + A+ G G G GV+++ L++ LA + PH + + KVAGY ++ D K +GPDG H N + C+ +YSG TTC ++AG+NL E DH +KA+Y RS+N MT + FT++L V+NE QN+G N L
Sbjct: 55 ALAHLGSN--SASTSVEAPQVSIHVPPKRYSKVDVYALNAAAQGDRG-QSQVNVYDLLHASDETQGPVPKAVYLAATRAVAALRDREAGIRVLSLFKALVFTYVW-LRNIAEDEPGM-------------------LEIGATGWTLRMPSHGVVPVGTIAESVDAVSTGDAEKHLREVLLVARGTRNGKGACLL-DWLNAGGFVDGDTSTLNATQVDGLHAYAAAKTKFMADGVQPIGEKERKIAES-AICCGTGLCGDGVYSIMALQIALAVDVPPHESAENFKVAGYDCVWQDNTFDDMSSEHVKYKMWQSGIFVGPDGPHAKNRSKECQRQYSGFTTCDELAGINLNPPEQDHSKKALYLRSLNTMTFSGFTFALRVLNERQNQGCNRKTL 423
BLAST of mRNA_C-linearis_contig93.16925.1 vs. uniprot
Match: A0A6H5KCW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW5_9PHAE) HSP 1 Score: 157 bits (397), Expect = 3.730e-37 Identity = 132/394 (33.50%), Postives = 189/394 (47.97%), Query Frame = 3 Query: 1215 ALGHVGNNRDSATRDIEACTQFKDRERTTDTEDVYAVLETANPQPGLQCDVDTYEAVLRAAEYFPSVGVPSRQAATKALDALHRRGVRVLSLFEVLVFTYYWHLQHRAGAAGGXXXXXXXXXXXXXXXXGVGRLAVGVNGWVV----HGTPGGG---EEGGGVTHALAADFLRPVLVGLSGSRQASNLSRLPSWLDPKWIADENVET-------GLQGYAKAKEDFVVDGLKPLTSQARGRGRAIAVRGGIGFGRGVFALKGLELRLAPNAAPHATTTDDKVAGYGAIFHDTRHQGHEGPPFPRKTRMGPDG-----HHESNHGEACREKYSGMTTCRDIAGVNLTRHESDHGRKAVYFRSINNMTLANFTYSLNVINELQNRGYNEMHLSVLL 2339
AL H+G+N S T + + +R + DVYA L+ A +Q V+ Y+ + +AE V AAT+A+ AL + G+RV SL EVL+FTY W L++ A G L VG GW + HG G E V+ + A L VLV G+R LP W D + T GL YA AK F+VDG++P+ + R + A+R GIG G G+ ++ L++ LA + P + + +VAGY ++HDT + K +M G H + A SG TTC ++AG+NL HE DH +KA+ RS+N MT +NFT++L VINE Q++G+N L LL
Sbjct: 72 ALAHLGSNGASTTVEAPQVSLPVPPKRDSKV-DVYA-LKAAAQGDRVQSQVNVYDLLHASAETQGPVPKAVNLAATRAVAALGKAGIRVNSLLEVLIFTYVW-LRNIAEDEPGM-------------------LEVGATGWTLRRPSHGVVPVGTTAESVDAVSTSDAEKHLLEVLVVARGARNGKGAC-LPDWFGAGDFVDGDTSTLCATQVDGLHAYAAAKTKFIVDGVQPIGEKERNIAES-AIRCGIGCGDGMHSIMVLQIALAVDVPPRESAKNFEVAGYDCVWHDTTFD--DKSSEHAKYKMWQSGILWAQTHLTRRTTARSASNSGFTTCDELAGINLNPHEQDHSKKALCLRSLNTMTFSNFTFALRVINERQDQGFNRKTLRTLL 439
BLAST of mRNA_C-linearis_contig93.16925.1 vs. uniprot
Match: A0A6H5JPP3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP3_9PHAE) HSP 1 Score: 150 bits (379), Expect = 1.240e-33 Identity = 89/222 (40.09%), Postives = 123/222 (55.41%), Query Frame = 2 Query: 8 YTVSQSTCT-CGGELKPVGD--VWAKLVTDAPQVRHVVVERRTCSACGTSAWASDSWRKTHVFNYDNTLLVDLSLLYNCLEQFFAGMPIQNFLYAYLKPLSKNTRWLPENPAFASVLDKNSRFYVQLTNAFLAFLALTDFSFEFRCFQWGSHPDILTADACVKMSVNQMTIALADASRPETILDFDMSMMLLKLSLVSMVFFQ-ERVNFVLGGSRPWVGRLP 661
YT SQ TC+ CG + V +T+ P + V V C CG +A+D+WR+T +FNY+N+ LV+LS+LY CLE F G I +L+PL+ + W+ NP + L + L + FLAFLAL D +FEFRC+ WG P +LT DAC N +T+ AS PE ++ D+ M LL+LS+VS +F RV FV+G VG P
Sbjct: 243 YTTSQKTCSGCGRDFPAESQHSVVPTRLTEGPGMSKVNVHTNECETCGIHGFANDNWRETGLFNYNNSYLVELSILYRCLEAFTRGTTICAVFETFLEPLASDLVWIKANPDLSKRLANGTNLLNVLNSIFLAFLALIDHTFEFRCWMWGKFPPMLTFDAC-----NSVTLGQVIASTPEQDINTDLVMNLLQLSIVSPAWFGGTRVQFVVGAGET-VGNAP 458
BLAST of mRNA_C-linearis_contig93.16925.1 vs. uniprot
Match: A0A6H5K6Y4_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y4_9PHAE) HSP 1 Score: 147 bits (370), Expect = 2.570e-33 Identity = 89/222 (40.09%), Postives = 123/222 (55.41%), Query Frame = 2 Query: 8 YTVSQSTCTCGGELKPVGD---VWAKLVTDAPQVRHVVVERRTCSACGTSAWASDSWRKTHVFNYDNTLLVDLSLLYNCLEQFFAGMPIQNFLYAYLKPLSKNTRWLPENPAFASVLDKNSRFYVQLTNAFLAFLALTDFSFEFRCFQWGSHPDILTADACVKMSVNQMTIALADASRPETILDFDMSMMLLKLSLVSMVFFQ-ERVNFVLGGSRPWVGRLP 661
YT SQ TC+ G P G+ V A +T+ P + V V C CG ASD+WR+T +FNY+N+ LV+LS+LY CLE F G I F +L+PL+ + W+ NP ++ L N + AL +FEFRC+ WG P ILT DAC+K++ N +T+ ASRPE ++ + M LL+LS+VS +F RV FV+G VG P
Sbjct: 160 YTTSQKTCSGCGRDFPTGNQYIVVATRLTEGPGMSKVNVHTNECETCGIHGLASDNWRETGLFNYNNSYLVELSILYRCLEAFTRGTTISAFFETFLEPLASDLVWIKANPDLSTRL-ANCTNLLXXXXXXXXXXALIYHTFEFRCWMWGKFPPILTFDACMKIACNFVTLGQVIASRPEQDINTVLIMNLLQLSMVSPAWFGGTRVQFVVGAGET-VGNAP 379
BLAST of mRNA_C-linearis_contig93.16925.1 vs. uniprot
Match: A0A6H5KIT6_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIT6_9PHAE) HSP 1 Score: 129 bits (324), Expect = 1.060e-29 Identity = 63/145 (43.45%), Postives = 86/145 (59.31%), Query Frame = 2 Query: 77 LVTDAPQVRHVVVERRTCSACGTSAWASDSWRKTHVFNYDNTLLVDLSLLYNCLEQFFAGMPIQNFLYAYLKPLSKNTRWLPENPAFASVLDKNSRFYVQLTNAFLAFLALTDFSFEFRCFQWGSHPDILTADACVKMSVNQMTI 511
++ P + V V C CG ASD+WR+T +FNY+N+ LV+LS+LY CLE F G I F +L+PL+ + W+ NP + L L N FLAFLAL D +FEFRC+ WG P ILT DAC+K++ N +T+
Sbjct: 3 VLLQGPGMSKVNVHTNECETCGIHGLASDNWRETGLFNYNNSYLVELSVLYRCLEAFTRGTTISAFFETFLEPLASDLVWIKANPDLSKRLANGINLLNVLNNIFLAFLALIDHTFEFRCWMWGKFPPILTFDACMKIACNFVTL 147
BLAST of mRNA_C-linearis_contig93.16925.1 vs. uniprot
Match: A0A6H5JGH9_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH9_9PHAE) HSP 1 Score: 136 bits (342), Expect = 1.360e-29 Identity = 71/170 (41.76%), Postives = 100/170 (58.82%), Query Frame = 2 Query: 11 TVSQSTCT-CGGELKPVGD--VWAKLVTDAPQVRHVVVERRTCSACGTSAWASDSWRKTHVFNYDNTLLVDLSLLYNCLEQFFAGMPIQNFLYAYLKPLSKNTRWLPENPAFASVLDKNSRFYVQLTNAFLAFLALTDFSFEFRCFQWGSHPDILTADACVKMSVNQMTI 511
T SQ+TC+ CG + V A +T+ P + V V C CG AS++WR+T +FNY+N+ LV+LS+LY CLE F G I F +L+PL+ + W+ NP ++ L + L N FLAFLAL D +FEFRC+ W P ILT DAC+K++ N +T+
Sbjct: 173 TTSQNTCSGCGRDFPAENQHTVVATRLTEGPGMSKVNVHTNECETCGIHGLASENWRETGLFNYNNSYLVELSILYRCLEAFTRGTTISAFFETFLEPLASDLVWIKANPDLSNRLANGTNLLNVLNNIFLAFLALIDHTFEFRCWMWVKFPPILTFDACMKIACNFVTL 342 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig93.16925.1 >prot_C-linearis_contig93.16925.1 ID=prot_C-linearis_contig93.16925.1|Name=mRNA_C-linearis_contig93.16925.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=554bp MSMKDLMELHKKISKGQTGSSLARKEKFAEKFRALFEDGDCSKLFLGGRGback to top mRNA from alignment at C-linearis_contig93:587767..594734+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig93.16925.1 ID=mRNA_C-linearis_contig93.16925.1|Name=mRNA_C-linearis_contig93.16925.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6968bp|location=Sequence derived from alignment at C-linearis_contig93:587767..594734+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig93:587767..594734+ >mRNA_C-linearis_contig93.16925.1 ID=mRNA_C-linearis_contig93.16925.1|Name=mRNA_C-linearis_contig93.16925.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3324bp|location=Sequence derived from alignment at C-linearis_contig93:587767..594734+ (Chordaria linearis ClinC8C monoicous)back to top |