mRNA_C-linearis_contig93.16921.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig93.16921.1 vs. uniprot
Match: A0A6H5JSZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ3_9PHAE) HSP 1 Score: 419 bits (1076), Expect = 4.850e-146 Identity = 207/257 (80.54%), Postives = 226/257 (87.94%), Query Frame = 2 Query: 2 WMDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVERFAVSAHEKKEVVSDVDVENPTPRVSGFDMIWAFPLLYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRRVQRLDASNKEIRDAGDNAIAVARAFKTAASHAVPNERQLRKREHDTTQFLRDESMKSKDGIN 772 WMDMHQHLPYSMARLACSSF+EGKWAGSEKAFEHAVGQE+ARA LL LWP+LYE AEW GW+EEH +LEIL DDLSEA TT EKD+LTFGMFSKL+AS EFR EVER+A+SA EKKE+V D D EN PRVSGFDMIW+FPLLYEWACHAI FAPIHQQLVES FST+DTCT+KHDSREID+VRLGQFRS SRRVQRL A+NKEIR AGD AIAVAR K +A+HA+PNERQLRKR HDT QFLRD+S KSK G N Sbjct: 8 WMDMHQHLPYSMARLACSSFFEGKWAGSEKAFEHAVGQEYARASLLALWPELYEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEVERYALSAREKKEIVVDDDAENQAPRVSGFDMIWSFPLLYEWACHAILFAPIHQQLVESDFSTFDTCTQKHDSREIDIVRLGQFRSSHSRRVQRLYATNKEIRQAGDKAIAVARELKKSAAHAIPNERQLRKRTHDTKQFLRDQSEKSKHGSN 264
BLAST of mRNA_C-linearis_contig93.16921.1 vs. uniprot
Match: A0A6H5JU73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE) HSP 1 Score: 413 bits (1061), Expect = 1.060e-136 Identity = 207/273 (75.82%), Postives = 235/273 (86.08%), Query Frame = 2 Query: 2 WMDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVERFAVSAHEKKEVVSDVDVENPTPRVSGFDMIWAFPLLYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRRVQRLDASNKEIRDAGDNAIAVARAFKTAASHAVPNERQLRKREHDTTQFLRDESMKSKDGINWIVKSVMEEDMLSEES 820 WMDMHQHLPYSMARLACSSF+EGKWAGSEKA EHAVGQE+ARA LL LWP+L E AEW GW+EEH +LEIL DDLSEA TT EKD+LTFGMFSKL+AS EFR EVER+++SA EKKE+V D D E+ PRVSGFDMIW+FPLLYEWA HAI FAPIHQQLV+SV STYDTCT+KHDSREI +VRLGQFRS QSRRVQRL A+NKEIR+AGD IAVAR K +A+ A+PN+ QLRKR DT QFLRD+S KSK G NW+V+SV++E+M SEES Sbjct: 504 WMDMHQHLPYSMARLACSSFFEGKWAGSEKAIEHAVGQEYARASLLALWPELNEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEVERYSLSAREKKEIVVDDDAESQAPRVSGFDMIWSFPLLYEWARHAILFAPIHQQLVKSVCSTYDTCTQKHDSREIGIVRLGQFRSSQSRRVQRLHATNKEIREAGDKVIAVARELKKSAAQAIPNDWQLRKRVLDTKQFLRDQSEKSKHGSNWVVRSVLKEEMSSEES 776
BLAST of mRNA_C-linearis_contig93.16921.1 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE) HSP 1 Score: 364 bits (935), Expect = 4.330e-122 Identity = 190/267 (71.16%), Postives = 215/267 (80.52%), Query Frame = 2 Query: 32 SMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVERFAVSAHEKKEVVSDVDVENPTPRVSGFDMIWAFPLLYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRRVQRLDASNKEIRDAGDNAIAVARAFKTAASHAVPNERQLRKREHDTTQFLRDESMKSKDGINWIVKSVMEEDMLS-EESEAE 829 SM RLACSSFYEGKWAGSE+ FEHAVGQE ARALLL WP+ YE+ EW+GWEE++TF E +KLT GMFSKL AS EFR+E+ER+A SAHEKK+VVSDVDVEN TPRVSGFDMIW FP LYEWACHA+FFAPIHQQLVES STYDT T+KHDSRE+D+VRLGQF SR SRRV+RLD+SN+EIRD GD AIAVA K +ASHAVPNERQLR EHD +FL+D+S KSK G W+VKSVMEE + S EESE+E Sbjct: 164 SMTRLACSSFYEGKWAGSEEGFEHAVGQEVARALLLAFWPNRYESTEWKGWEEQNTFRE---------------NKLTLGMFSKLAASAEFREELERYAASAHEKKKVVSDVDVENQTPRVSGFDMIWTFPQLYEWACHAVFFAPIHQQLVESSSSTYDTGTQKHDSRELDIVRLGQFSSRGSRRVERLDSSNQEIRDEGDKAIAVATVLKKSASHAVPNERQLRNGEHDWRKFLKDKSEKSKHGSKWVVKSVMEEVLSSSEESESE 415
BLAST of mRNA_C-linearis_contig93.16921.1 vs. uniprot
Match: D7FXZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ1_ECTSI) HSP 1 Score: 343 bits (881), Expect = 4.850e-116 Identity = 182/280 (65.00%), Postives = 218/280 (77.86%), Query Frame = 2 Query: 5 MDMHQHLP-YSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVERFAVSAHEKKEVVSD-VDVENPTPRVSGFDMIWAFPLLYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRRVQRLDASNKEIRDAGDNAIAVARAFKTAASHAVPNERQLRKREHDTTQFLRDESMKSKDGINWIVKSVMEEDMLSEESEAEINA 838 MD H P +++ YEGKWAG++KA EHAVG+EFARALL+ LWP+ E+AEWR W+EEH L IL DLSEA T GEKDKLTFGM+++L+ S EFRKEVE +A SAHEKKEVVSD +DV+NP PRVS F MIW FPLLYEWA HAIF A IH+QLV SVFS YDTCT++HDSREID+VRLGQFRS QSRR+++L ASN EIR+AG+ AIA ARA + AAS AVPNERQ RKR HD TQF+R + K+K G W V+SV+ DM ESE++++A Sbjct: 1 MDRHASAPPLQHGQVSLQLLYEGKWAGADKANEHAVGKEFARALLVALWPEKNESAEWREWQEEHDILGILEGDLSEATTPGEKDKLTFGMYTELNESAEFRKEVEVYAASAHEKKEVVSDDLDVDNPPPRVSAFGMIWNFPLLYEWARHAIFLAVIHEQLVGSVFSKYDTCTQQHDSREIDIVRLGQFRSAQSRRIRKLHASNHEIREAGNKAIAEARALRKAASEAVPNERQQRKRGHDVTQFVRTATNKAKYGPGWQVRSVL--DMSESESESDVSA 278
BLAST of mRNA_C-linearis_contig93.16921.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI) HSP 1 Score: 164 bits (415), Expect = 1.120e-43 Identity = 96/238 (40.34%), Postives = 132/238 (55.46%), Query Frame = 2 Query: 2 WMDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVERFAVSAHEKKEVVSDVDVENPTPR-VSGFDMIWAFPLLYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRRVQRLDASNKEIRDAGDNAIAVARAFKTAASHAVPNERQLRKR 712 WM+ HQ LP SMAR+ C SF+ E A E AVG EFARA L V W LYE E E + L DL KD+LTFG+FS++D+ R E+E++A S D +V+ P+ S ++ FPLLY+ CH +F PIHQQL+E+ FS +D+C +K D E+D+VR+G ++S +SR + DA+ ++IR AG + AR K + P E RKR Sbjct: 233 WMERHQQLPLSMARIGCPSFFARTGIMGEGAVEQAVGPEFARAFLHVAWSALYEGEP--RTEREREYRTQLVKDLGGTTDARRKDELTFGLFSRIDSDRSVRNELEQYANSGW------GDKEVDQGAPKGTSALARLFDFPLLYKLVCHRFYFVPIHQQLIEAFFSKFDSCAQKTDMAEMDIVRVGGWKSAESRDIVCADATGEKIRAAGKKVLEKAREAKAVSHARKPAENLSRKR 462
BLAST of mRNA_C-linearis_contig93.16921.1 vs. uniprot
Match: A0A6H5JI13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI13_9PHAE) HSP 1 Score: 149 bits (377), Expect = 1.980e-38 Identity = 90/230 (39.13%), Postives = 120/230 (52.17%), Query Frame = 2 Query: 5 MDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVERFAVSAHEKKEVVSDVDVENPTPR-VSGFDMIWAFPLLYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRRVQRLDASNKEIRDAGDNAIAVARAFKTAASHAVPN 691 M HQ LP SMAR+ C SFY A E AVG EFARA V WP LYE E E + L DL KD+LT G+FS +D R E+E++A S D +++ P+ S ++ PLLY CH +F PIHQQL+E+ FS YD+C KK D E+D+VR+G ++S +SR + +DA + +IR AG + A K + PN Sbjct: 235 MQRHQELPLSMARIGCPSFYARTGIMGGGAVEQAVGPEFARAFPHVAWPGLYEGEP--RTERERQYRTQLAKDLGGTTEARRKDELTLGLFSCIDGDLSVRSELEQYANSGW------GDKEIDESAPKGTSALARLFDLPLLYRLVCHRFYFVPIHQQLIEAFFSKYDSCAKKTDMAEMDVVRVGGWKSAESRDIVCVDAIDDQIRGAGKKVLKEATEAKAISHARKPN 456
BLAST of mRNA_C-linearis_contig93.16921.1 vs. uniprot
Match: A0A6H5KR45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR45_9PHAE) HSP 1 Score: 135 bits (339), Expect = 1.220e-33 Identity = 82/190 (43.16%), Postives = 107/190 (56.32%), Query Frame = 2 Query: 2 WMDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVERFAVSAHEKKEVVSDVDVENPTPRVSGFDMIWAFPLLYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRS 571 WM HQ LP SMAR+ C SFY + A E AVG E+ARA L V WP+ YE E R E E + L +D KD+LTFG+FS ++ E R EVE +A S KEV + + + T V F+ FP LY++ C +F PIHQQL+E+ FS YDTC KK D +D VR+G +++ Sbjct: 184 WMQRHQELPLSMARIGCPSFYARMGIMGKGAVEQAVGPEYARAFLHVGWPERYEG-EPRS-EREREYRVQLGEDFGGVIDARRKDELTFGLFSIVEEDAEMRCEVEGYAESGFGDKEVDEEAE-KGTTALVRLFEK---FPRLYKFVCVRFYFVPIHQQLIEAFFSKYDTCAKKTDVAVMDSVRVGSWQT 367
BLAST of mRNA_C-linearis_contig93.16921.1 vs. uniprot
Match: A0A6H5JMW8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW8_9PHAE) HSP 1 Score: 122 bits (305), Expect = 1.800e-28 Identity = 72/171 (42.11%), Postives = 87/171 (50.88%), Query Frame = 2 Query: 2 WMDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVERFAVSAHEKKEVVSDVDVENPTPRVSGFDMIWAFPLLYEWACHAIFFAPIHQQLVESVFSTYDTC 514 WM HQ LP SMAR+ C SFY A E AVG EFARA L V WP LYE E E + L DL KD+LTFG+FS +D R E+E++A S KE+ E+ S + FPLLY+ CH +F PIHQQL+E+ FS C Sbjct: 159 WMQRHQELPLSMARIGCPSFYARTGIMGGGAVEQAVGPEFARAFLHVAWPGLYEGEP--RTEREREYRTQLVKDLGGTTEARRKDELTFGLFSCIDGDLSVRSELEQYANSGWGNKEID-----ESAPKSTSELARLLDFPLLYQLVCHRFYFVPIHQQLIEAFFSKNIVC 322
BLAST of mRNA_C-linearis_contig93.16921.1 vs. uniprot
Match: A0A6H5JQF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF6_9PHAE) HSP 1 Score: 112 bits (281), Expect = 2.210e-25 Identity = 66/160 (41.25%), Postives = 86/160 (53.75%), Query Frame = 2 Query: 2 WMDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVERFAVSAHEKKEVVSDVDVENPTPR-VSGFDMIWAFPLLYEWACHAIFFAPIHQQ 478 WM+ HQ LP SMAR+ C SFY +E A E AVG +FARA L V WP LY+ E E F L E KD+LTFG+FS +D+ R E+E++A S SD +V+ P+ S ++ +PLLY+ CH +F PIHQQ Sbjct: 147 WMERHQQLPLSMARIGCPSFYARTGIMAEGAVEQAVGPKFARAFLHVAWPGLYDGEP--RTEREREFRTQLVKYSGEITEARRKDELTFGLFSCIDSDLSVRNELEQYANSGW------SDKEVDQGAPKGTSALACLFDYPLLYKLVCHRFYFVPIHQQ 298
BLAST of mRNA_C-linearis_contig93.16921.1 vs. uniprot
Match: A0A6H5L8G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G1_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 6.720e-7 Identity = 30/55 (54.55%), Postives = 34/55 (61.82%), Query Frame = 2 Query: 2 WMDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYEN 166 WM+ HQ LP SMAR+AC SFY ++ A E G EFARA L V WP LYE Sbjct: 193 WMERHQQLPLSMARIACPSFYARTGIMADGAVE---GPEFARAFLHVAWPGLYEG 244 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig93.16921.1 >prot_C-linearis_contig93.16921.1 ID=prot_C-linearis_contig93.16921.1|Name=mRNA_C-linearis_contig93.16921.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=278bp MDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDback to top mRNA from alignment at C-linearis_contig93:470296..471133- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig93.16921.1 ID=mRNA_C-linearis_contig93.16921.1|Name=mRNA_C-linearis_contig93.16921.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=838bp|location=Sequence derived from alignment at C-linearis_contig93:470296..471133- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig93:470296..471133- >mRNA_C-linearis_contig93.16921.1 ID=mRNA_C-linearis_contig93.16921.1|Name=mRNA_C-linearis_contig93.16921.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1668bp|location=Sequence derived from alignment at C-linearis_contig93:470296..471133- (Chordaria linearis ClinC8C monoicous)back to top |