Homology
BLAST of mRNA_C-linearis_contig93.16916.1 vs. uniprot
Match:
A0A6H5KBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF2_9PHAE)
HSP 1 Score: 166 bits (419), Expect = 2.810e-39
Identity = 209/576 (36.28%), Postives = 248/576 (43.06%), Query Frame = 2
Query: 2 GEGGTKGERLARALGAAREMMCCYGRLEGELRVVQGLETAREKMLLRLQRLHEKITTCQPNDGVPATALATAGEGA-----------------PASRSDQRRLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSRQPSKRKGSAAPKAPSPFCLCLLASRSKQEVYLSLQAVSHARAALEGVEEGRGHTGRWCRWVSSALAAADAEGXXXXXXXXXXXRAAATTSPFPADTPTESLATSCLPPSASKTTHGGGDPEGGPVGSFDGVTPSPSSDSDAALHQKQQQRLARARALQEELERRVLATHEATAPVAPGETSAGG-VPALLAAM-----------EAGLRLQEKKFGGSVDSPGPAE--------------------------LAAVLRRVS-----EEVDARLGERPLTEALEEHRHXXXXXXXXXXXQHHLQQQPXXXXXXXXXXXXXPGEQPPPHESDMGFPSAFLSPEGSSSRKEQEREEAAPDLGGGTAGGGTVLNTFETKLPPNRHQHSALTAGESAAETGRGMTWAGVADLERSRRAHREKLEEILSACVGEMPFEPRGGGW 1549
GE KGE +ARALGAAREMM CYG LE ELRVV+GLETAR++ML R++ L + P G A +L T G P++ S R XXXXXXXXX A Q RK P SPFCLCL+A RS E+ SL VS AR L+ ++EGR H GRWCRW SSAL AA++ + P DT + A + + A + GD DA L Q LQE LERRV A P A G +AG VP+ L+A A +R S PG A L R V+ E +D RLGE LT LEE R XXXXXXXXX XXXXXXXXXXXXX +PP + FP E S SR DL G G E +L + + A+ G G+ WAG + LERSR A+RE+LE +LSACV MP EPRGGGW
Sbjct: 522 GEAEAKGEGMARALGAAREMMSCYGGLEAELRVVEGLETARQRMLRRMRSLFRDVAESHPGSGKVAASLRTIETGPGYQQXXXXXXXXXXXXXPSAMSTSRAGTADATAMPGRAGAXXXXXXXXXSATQPTTKTASRCQRPSRKKHTPPAEASPFCLCLVAGRSPGELSRSLAKVSRAREVLDALDEGREHAGRWCRWASSALVAAESAPPPRSGAVSGAAAGSRGAPRLPEDTASLIAAAATISEPA-EDNQATGDVR------------------DATLRQTW--------CLQEGLERRV----RAALPPAAGTPAAGSPVPSWLSAAIAMLEPTRRDGSAPMRTGRTYGHASAGPPGTARPRPNVGRTRTVPIPLLSAPPCVGCLCLTTTARIVAFVPDQEGIDLRLGEAALTTTLEEQRIQRXXXXXXXXXXXXX----XXXXXXXXXXXXXXXHRPPALHTRQAFPPTSAVEEVSCSR----------DLRGHDGGS-------EAQLLAGSSSPAESALWDRNADKGTGVEWAGSSALERSRVANRERLESLLSACVEAMPLEPRGGGW 1045
BLAST of mRNA_C-linearis_contig93.16916.1 vs. uniprot
Match:
D7G2T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T0_ECTSI)
HSP 1 Score: 125 bits (313), Expect = 1.710e-26
Identity = 112/207 (54.11%), Postives = 133/207 (64.25%), Query Frame = 2
Query: 2 GEGGTKGERLARALGAAREMMCCYGRLEGELRVVQGLETAREKMLLRLQRLHEKITTCQPNDG-VPATALATAGEGAPASRSDQRRLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------APSRQPSKRKGSAAPKAP-SPFCLCLLASRSKQEVYLSLQAVSHARAALEGVEEGRGHTGRWCRWVSSALAAAD 571
GE KGE +ARALGAAREMM CYG LEGELRVV+GLETAR++MLLR++ L + QP G V A+ T P XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + ++PS++K P+A SPFCLCL+A R E+ SL V+ AR L+ ++EGR H GRWCRW SSAL AA+
Sbjct: 252 GEAEAKGEGMARALGAAREMMSCYGGLEGELRVVEGLETARQRMLLRMRSLFRDVAESQPGSGKVAASPRTTEARPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPTTKTTSRCQRPSRKK--CTPRAEVSPFCLCLVACRPPGELSRSLAKVTRAREVLDALDEGREHAGRWCRWASSALVAAE 456
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16916.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.81e-39 / Id = 36.28 Expect = 1.71e-26 / Id = 54.11 Sequence A0A6H5KBF2_9PHAE D7G2T0_ECTSI
Match Name E-value Identity Description
A0A6H5KBF2_9PHAE 2.810e-39 36.28 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D7G2T0_ECTSI 1.710e-26 54.11 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 4 Model size 1906 Cds size 1494 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930799.3866858-UTR-C-linearis_contig93:328657..328715 1622930799.3866858-UTR-C-linearis_contig93:328657..328715 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig93 328658..328715 + 1690881256.2631216-UTR-C-linearis_contig93:328657..328715 1690881256.2631216-UTR-C-linearis_contig93:328657..328715 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig93 328658..328715 + 1622930799.5376332-UTR-C-linearis_contig93:331428..331782 1622930799.5376332-UTR-C-linearis_contig93:331428..331782 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig93 331429..331782 + 1690881256.3201754-UTR-C-linearis_contig93:331428..331782 1690881256.3201754-UTR-C-linearis_contig93:331428..331782 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig93 331429..331782 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930799.4142776-CDS-C-linearis_contig93:328715..328763 1622930799.4142776-CDS-C-linearis_contig93:328715..328763 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig93 328716..328763 + 1690881256.2730184-CDS-C-linearis_contig93:328715..328763 1690881256.2730184-CDS-C-linearis_contig93:328715..328763 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig93 328716..328763 + 1622930799.435237-CDS-C-linearis_contig93:329332..329846 1622930799.435237-CDS-C-linearis_contig93:329332..329846 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig93 329333..329846 + 1690881256.281887-CDS-C-linearis_contig93:329332..329846 1690881256.281887-CDS-C-linearis_contig93:329332..329846 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig93 329333..329846 + 1622930799.4665892-CDS-C-linearis_contig93:330114..330484 1622930799.4665892-CDS-C-linearis_contig93:330114..330484 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig93 330115..330484 + 1690881256.2908955-CDS-C-linearis_contig93:330114..330484 1690881256.2908955-CDS-C-linearis_contig93:330114..330484 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig93 330115..330484 + 1622930799.5109835-CDS-C-linearis_contig93:330866..331428 1622930799.5109835-CDS-C-linearis_contig93:330866..331428 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig93 330867..331428 + 1690881256.3056722-CDS-C-linearis_contig93:330866..331428 1690881256.3056722-CDS-C-linearis_contig93:330866..331428 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig93 330867..331428 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig93.16916.1
>prot_C-linearis_contig93.16916.1 ID=prot_C-linearis_contig93.16916.1|Name=mRNA_C-linearis_contig93.16916.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=498bp
MMCCYGRLEGELRVVQGLETAREKMLLRLQRLHEKITTCQPNDGVPATAL back to top mRNA from alignment at C-linearis_contig93:328658..331782+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig93.16916.1 ID=mRNA_C-linearis_contig93.16916.1|Name=mRNA_C-linearis_contig93.16916.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3125bp|location=Sequence derived from alignment at C-linearis_contig93:328658..331782+ (Chordaria linearis ClinC8C monoicous)GGGGGAAGGCGGGACGAAGGGCGAGCGGCTGGCCAGGGCGCTGGGGGCGG
CACGCGAG ATGATGTGCTGCTACGGGAGGCTCGAGGGGGAGCTGAGGGTG
GTTCAG GTGGGTGTGGGCCTTTGATATACGAAGTGTACCAGTACCATGTA
CCAGTACCGCGTGTATGTATGCTCATGGAGCTATTTCGTGTCCAGATCTC
TTTCTATGGAGTAAGGATTAAGGAGCTGAAGGTTGTCCATATCGGTGGAC
CTTTTTTTTTATGGGGTTTTCGTTTCCAGTTTTTTGTTTCTTGTTGTCAT
GAGGCAATACGGTACCGCGAGGGCTTTTTCTTCGCTCTTTGTAGTTGCGA
GAGAAGCCGGTAATATGAATAGAATCACCCGCGAGAAAACTGCTCGGGGG
ATGTACTGGTACATGGTATACATCATAGTTCTGCAATAACATATAGAATG
CGTTTCGCGGTATCGGTGCACCAACGTTTGCAACCCTTCGCGACGACAAC
CCTTTGTTTGTACGAAAGCAGGGCTCCCCTTCGGTGACCGGTGGATTTAG
TTAAAGTTCGGCCAATCTTTCAAGTAGTGTTTGAGAAATTCTGCCTGAAA
ATCTTTGCCGTTCTCCCACCCCGCCCCCCCTCTTCCTGCGGGGCACCCTA
CCTTCCGTGTGTACACGATACGCAGGGCCTGGAGACAGCGAGAGAGAAGA
TGCTCCTGCGGCTGCAGCGCCTTCACGAGAAAATCACCACTTGCCAACCC
AACGACGGGGTTCCTGCTACCGCGCTTGCAACTGCCGGGGAGGGAGCGCC
TGCATCACGAAGCGACCAGCGTCGACTACAACAGCAACACCACCACCACC
ACCACCACCAACAACAACAACAACACCAAGCATCCCCCGTGGCGGCGGCG
GCAGCGGCGGCGACGCCTCCCGCACCCAGCCGGCAACCCAGTAAAAGAAA
AGGCAGCGCTGCCCCGAAGGCTCCTTCCCCTTTCTGCCTGTGCCTGCTGG
CCAGCAGGTCGAAGCAGGAGGTTTATCTCTCTCTGCAGGCCGTCTCTCAC
GCACGCGCGGCCCTGGAAGGTGTTGAGGAGGGAAGGGGGCACACCGGGCG
GTGGTGTCGGTGGGTGTCTTCGGCGCTGGCGGCGGCCGATGCGGAAGGCT
CTGGTGTTGGCGGTGGTGGTGGTTCTGCTGAGCGTGCAG GTGAGCGTGTC
GGTTGTTGTGGTTGTTGTTGTTGTTGTTGTCGGTATTTTTGTCGATTTGA
TGCGGTGTCGGTGGCCAACCAACAGCAGCTCCATCGGGAAAGACATGTGT
CCGTACAGCTACATAAAATATGATTTAACTCGGGCTTCAAAACCATTCGT
GGTGCGGAGTTAACACAGGCGATACCCTAATCCAGCCCACCACCGTTTCC
ACATTCTTGCTGTGCTTCTTGTACATTTACCTCGCAAAATGCACCAAAAT
CCAACAGCGGCGACGACGAGCCCGTTCCCAGCAGACACCCCTACCGAAAG
TCTCGCCACCTCTTGTTTGCCTCCTTCGGCGTCGAAGACAACACACGGGG
GCGGTGACCCCGAAGGGGGTCCCGTGGGATCATTCGACGGCGTCACGCCC
TCACCGTCCTCCGACAGCGACGCTGCCTTGCACCAGAAGCAGCAGCAAAG
GCTGGCAAGAGCACGGGCTCTGCAAGAGGAGCTGGAGAGGCGCGTGCTGG
CGACACACGAGGCGACAGCCCCAGTCGCCCCTGGAGAGACTTCGGCCGGC
GGCGTGCCAGCTCTGCTCGCTGCGATGGAAGCGGGTCTACGGCTGCAGGA
GAAGAAATTCGGCGGCTCTGTCGACAG GTTGGTGGTTGTTTGGGCTAGCC
GTGGGGTGATTTTTTTTTTACTTTTTGGGGGGCTTTCTTCAGGGGGGGAA
AGGGCGTTGATGCGGTTGCTTCAATTTTTCAGGTGTTGTGCGGAGCTGCG
GGCGGCGTAGTCGGAGAAAGAACCGCTGCATTTCTGCCGATAGGTCGTTC
GTTTCTTTTGGATATTGTTGCGTTCAGGTGGCTAATACAGTAGTAGCGAA
ACGGATCCTTCTCCAAAGACCTTGCGTCCCCGAAGATACACCCCTGAGCG
TTGCCTCCAAGCGCTTGTTTCTCCATTTCTCTGACCCCGAATAGCAATAT
TATCGTGGTCAGTCTGACTTGACGCACTTCCCCCCTCCCCCAATCCTTGT
GCATGGCAGCCCCGGACCTGCAGAGCTCGCGGCCGTTCTGCGGCGAGTGT
CGGAAGAGGTGGACGCAAGGCTAGGGGAGAGACCACTGACAGAGGCGCTC
GAGGAACACCGACATCAACATCGGCAACGACAGCAGCAACAGCGACAGCA
ACATCATCTACAGCAACAGCCCCATACACGTCACCCCCATCAGCCGCGGC
AGCATGAGCACCCGGGCGAACAGCCGCCGCCGCACGAAAGTGACATGGGT
TTTCCGTCGGCATTTTTATCGCCCGAGGGCAGCAGCAGCCGCAAGGAACA
GGAGCGAGAAGAAGCTGCGCCTGACTTGGGCGGCGGCACCGCAGGGGGGG
GCACCGTGCTTAATACTTTCGAGACGAAACTGCCCCCGAACCGGCACCAA
CACTCCGCGCTAACCGCGGGCGAAAGCGCTGCTGAGACGGGTCGTGGGAT
GACGTGGGCCGGGGTGGCGGACCTGGAGCGATCAAGGAGGGCGCACAGGG
AGAAACTGGAGGAGATCCTGTCTGCCTGCGTCGGAGAAATGCCGTTTGAG
CCCCGCGGGGGGGGCTGGTAG CTGGTAGTCCCGATCAAGGGATCGGTGCA
GTTTTGGCTTCGAATTGTATTGACGCCCCGGGGTGGTGCGTGTGGGGGAA
AAGCGCATGGTGAGGTGTGGTGTTTGCCGTTCTAATTTCTGCGGGTTGTC
GTAGGTGTTCGAGGTCGAGCAGGCAAAATGTTGGGACCCAGTCTTTTTTT
TTTGTTCTTTTCTTGGGGTGTGTGTGAGGAGTTGGAGTCGGTCTGAAAGG
TCTATGCCCAGGATGTTTCGATCAGGGGATGATGACAAAACTGCCGGAAG
GTGTACGTAGACTTTCTATGTAGTATGGGTGGGGTGATCTACGATCGAGC
GAAACACACTCCTGTAGAAATCCAA back to top Coding sequence (CDS) from alignment at C-linearis_contig93:328658..331782+
>mRNA_C-linearis_contig93.16916.1 ID=mRNA_C-linearis_contig93.16916.1|Name=mRNA_C-linearis_contig93.16916.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2988bp|location=Sequence derived from alignment at C-linearis_contig93:328658..331782+ (Chordaria linearis ClinC8C monoicous) back to top