mRNA_C-linearis_contig93.16907.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig93.16907.1 vs. uniprot
Match: A0A6H5K0U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U4_9PHAE) HSP 1 Score: 131 bits (330), Expect = 5.840e-28 Identity = 82/156 (52.56%), Postives = 99/156 (63.46%), Query Frame = 3 Query: 75 MEEDGAARRLAGLGLDEETS--AP--SQFLDAIIITLKQAC-DG--KQWLVSTKELQLASLQLCAACREMPTLHLRVDRQIPDWLLVAPTEAAVDLEATGGSGTRLPRLRARAVTWDLPSADRLSSPIDALTAVEVITFAGGFNSSVRSVAWPDKL 521
ME A +LAGL + E S AP S+FLD +I+ L QAC DG K W STKELQLASLQLC ACR+ LHLRV+ P LL AP ++ D GTR+PRLRAR V+WDL SADRLSS I AL + +V TF+ N+ + +V WP L
Sbjct: 1 MEATEVAEQLAGLKIHEAKSGAAPTNSRFLDVVIVVLNQACGDGGQKHWFASTKELQLASLQLCEACRDAAALHLRVNTSTPLRLL-APADSPSD---GSEEGTRVPRLRAREVSWDLTSADRLSSSIYALASAQVFTFSDSLNAVLDAVVWPTSL 152
BLAST of mRNA_C-linearis_contig93.16907.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI) HSP 1 Score: 117 bits (293), Expect = 3.650e-26 Identity = 59/128 (46.09%), Postives = 81/128 (63.28%), Query Frame = 3 Query: 150 LDAIIITLKQACDGKQWLVSTKELQLASLQLCAACREMPTLHLRVDRQIPDWLLVAPTEAAVDLEATGGSGTRLPRLRARAVTWDLPSADRLSSPIDALTAVEVITFAGGFNSSVRSVAWPDKLKAVE 533
L ++I+ L + CDG W STKELQ ASL+ C ACR P +HL+VD QIP LL A + TR+PRLRAR+VTW++ +A L +PI A+T V+ + F G F+ S+ +V WP +LK +E
Sbjct: 15 LSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRL--CWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLKMIE 140
BLAST of mRNA_C-linearis_contig93.16907.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 119 bits (298), Expect = 6.420e-25 Identity = 59/128 (46.09%), Postives = 81/128 (63.28%), Query Frame = 3 Query: 150 LDAIIITLKQACDGKQWLVSTKELQLASLQLCAACREMPTLHLRVDRQIPDWLLVAPTEAAVDLEATGGSGTRLPRLRARAVTWDLPSADRLSSPIDALTAVEVITFAGGFNSSVRSVAWPDKLKAVE 533
L+A+I+ L + CDGK W STKELQLASL C ACR T+HL VD QIP LL + + TR+PRLR+R VTW++P+A +L +PI A+T +E + F F S+ +V WP+ L+ +E
Sbjct: 52 LEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRL--CWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTME 177
BLAST of mRNA_C-linearis_contig93.16907.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE) HSP 1 Score: 109 bits (273), Expect = 3.360e-22 Identity = 60/133 (45.11%), Postives = 78/133 (58.65%), Query Frame = 3 Query: 135 APSQFLDAIIITLKQACDGKQWLVSTKELQLASLQLCAACREMPTLHLRVDRQIPDWLLVAPTEAAVDLEATGGSGTRLPRLRARAVTWDLPSADRLSSPIDALTAVEVITFAGGFNSSVRSVAWPDKLKAVE 533
A L+AII+ L + DGK W STKE QLASL+ C ACR TL L+VD + P LL A + GTR+PRLRAR VTWD+P+A L + I ++ + + F F S+ +VAWP +LK VE
Sbjct: 8 ARDSCLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRL--CGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDSLEAVAWPRRLKTVE 138
BLAST of mRNA_C-linearis_contig93.16907.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 111 bits (278), Expect = 9.220e-22 Identity = 57/131 (43.51%), Postives = 77/131 (58.78%), Query Frame = 3 Query: 141 SQFLDAIIITLKQACDGKQWLVSTKELQLASLQLCAACREMPTLHLRVDRQIPDWLLVAPTEAAVDLEATGGSGTRLPRLRARAVTWDLPSADRLSSPIDALTAVEVITFAGGFNSSVRSVAWPDKLKAVE 533
S L + + L + CDGK W STKELQLASL+LC ACR TLHL VD P LL A + + GTR+PRLRAR TW++P+A + + I A V+ + F F+ S+ ++ WP +LK +E
Sbjct: 134 SSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRL--CGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIE 262
BLAST of mRNA_C-linearis_contig93.16907.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE) HSP 1 Score: 109 bits (272), Expect = 1.120e-21 Identity = 61/120 (50.83%), Postives = 74/120 (61.67%), Query Frame = 3 Query: 183 CDGKQWLVSTKELQLASLQLCAACREMPTLHLRVDRQIPDWLLVAPTEAAVDLEATGGSG---TRLPRLRARAVTWDLPSADRLSSPIDALTAVEVITFAGGFNSSVRSVAWPDKLKAVE 533
CDGK+W STKELQ ASL+ C ACR+ TL LRVD Q P LL AAVD + TR+PRLRAR V W++P+A L SPI AL V + F F S+ SVAWP +LK ++
Sbjct: 2 CDGKRWYTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLL-----AAVDAPSPHSKRPCRTRVPRLRARRVIWNMPTATELKSPIFALKDVVRLDFGPAFEGSLESVAWPQRLKEID 116
BLAST of mRNA_C-linearis_contig93.16907.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 108 bits (270), Expect = 1.340e-20 Identity = 61/130 (46.92%), Postives = 80/130 (61.54%), Query Frame = 3 Query: 150 LDAIIITLKQACDGKQWLVSTKELQLASLQLCAACREMPTLHLRVDRQIPDWLLVA---PTEAAVDLEATGGSGTRLPRLRARAVTWDLPSADRLSSPIDALTAVEVITFAGGFNSSVRSVAWPDKLKAV 530
L+AI + L + DGK W STKELQLASL+ C ACR TLHL VD +IP LL A P + L S R+PRLRAR VTW++P+A L SPI AL ++ + F F S+ +V WP +L+++
Sbjct: 37 LNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRL-----SRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWPRRLESI 161
BLAST of mRNA_C-linearis_contig93.16907.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE) HSP 1 Score: 106 bits (264), Expect = 3.650e-20 Identity = 59/127 (46.46%), Postives = 76/127 (59.84%), Query Frame = 3 Query: 159 IIITLKQACDGKQWLVSTKELQLASLQLCAACREMPTLHLRVDRQIPDWLLVAPTEAAVDL---EATGGSGTRLPRLRARAVTWDLPSADRLSSPIDALTAVEVITFAGGFNSSVRSVAWPDKLKAV 530
+I+ L + CDGK+W STKELQLASL+ C ACR+ L L+VD Q P LL AAVD TR+PRLRAR V W++P+A L + + AL V + F G FN S+ +V WP LK +
Sbjct: 21 LILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLL-----AAVDAPPPHTKRPCRTRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFNGSLEAVVWPPPLKQI 142
BLAST of mRNA_C-linearis_contig93.16907.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 2.060e-18 Identity = 54/110 (49.09%), Postives = 67/110 (60.91%), Query Frame = 3 Query: 141 SQFLDAIIITLKQACDGKQWLVSTKELQLASLQLCAACREMPTLHLRVDRQIPDWLLVAPTEAAVDLEATGGSGTRLPRLRARAVTWDLPSADRLSSPIDALTAVEVITF 470
S L+A++I L + C+G+ W STKELQLASL+ C ACR TLHL+VD QIP LL E TR+PRLRAR VTW + A LS PI A+T V+ + F
Sbjct: 111 SSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELL--CRTRVPRLRARRVTWGMRKAAELSIPIFAMTDVDCLKF 218
BLAST of mRNA_C-linearis_contig93.16907.1 vs. uniprot
Match: D7FUL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL9_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 2.450e-17 Identity = 68/157 (43.31%), Postives = 82/157 (52.23%), Query Frame = 3 Query: 75 MEEDGAARRLAGLGLDEETS--AP--SQFLDAIIITLKQAC-DG--KQWLVSTKELQLASLQLCAACREMPTLHLRVDRQIPDWLLVAPTEAAVDLEATGGSGTRLPRLRARAVTWDLPSADRLSSPIDALTAVEVITFAGGFNSSVRSVAWPDKLK 524
ME G A +LAGL + E S AP S+FLD I+ L QAC DG K W STKELQLASLQLC ACR+ LHLRVD P L AP ++ D TR+PRLRAR E +TF FN + +V++P L+
Sbjct: 1 MEAAGVAEQLAGLEIHEAESGAAPTGSRFLDVAIVVLNQACGDGGQKHWFASTKELQLASLQLCEACRDAAALHLRVDTSTP-LRLFAPADSPSD---DSEEDTRVPRLRAR----------------------EQLTFGRRFNRPLEAVSFPASLR 131 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig93.16907.1 >prot_C-linearis_contig93.16907.1 ID=prot_C-linearis_contig93.16907.1|Name=mRNA_C-linearis_contig93.16907.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=666bp MEEDGAARRLAGLGLDEETSAPSQFLDAIIITLKQACDGKQWLVSTKELQback to top mRNA from alignment at C-linearis_contig93:279249..283691+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig93.16907.1 ID=mRNA_C-linearis_contig93.16907.1|Name=mRNA_C-linearis_contig93.16907.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4443bp|location=Sequence derived from alignment at C-linearis_contig93:279249..283691+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig93:279249..283691+ >mRNA_C-linearis_contig93.16907.1 ID=mRNA_C-linearis_contig93.16907.1|Name=mRNA_C-linearis_contig93.16907.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3996bp|location=Sequence derived from alignment at C-linearis_contig93:279249..283691+ (Chordaria linearis ClinC8C monoicous)back to top |