mRNA_C-linearis_contig93.16901.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig93.16901.1
Unique NamemRNA_C-linearis_contig93.16901.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig93contigC-linearis_contig93:201535..201778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size225
Cds size207
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig93.16901.1prot_C-linearis_contig93.16901.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig93 201553..201778 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.044228-UTR-C-linearis_contig93:201534..2015521622930796.044228-UTR-C-linearis_contig93:201534..201552Chordaria linearis ClinC8C monoicousUTRC-linearis_contig93 201535..201552 +
1690881254.6353323-UTR-C-linearis_contig93:201534..2015521690881254.6353323-UTR-C-linearis_contig93:201534..201552Chordaria linearis ClinC8C monoicousUTRC-linearis_contig93 201535..201552 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.065254-CDS-C-linearis_contig93:201552..2017021622930796.065254-CDS-C-linearis_contig93:201552..201702Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 201553..201702 +
1690881254.6519916-CDS-C-linearis_contig93:201552..2017021690881254.6519916-CDS-C-linearis_contig93:201552..201702Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 201553..201702 +
1622930796.086609-CDS-C-linearis_contig93:201721..2017781622930796.086609-CDS-C-linearis_contig93:201721..201778Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 201722..201778 +
1690881254.6634545-CDS-C-linearis_contig93:201721..2017781690881254.6634545-CDS-C-linearis_contig93:201721..201778Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 201722..201778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig93.16901.1

>prot_C-linearis_contig93.16901.1 ID=prot_C-linearis_contig93.16901.1|Name=mRNA_C-linearis_contig93.16901.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=69bp
MCTSAIVTGSSFPSPRMKTHTLTPLSPVVYRFSTAVSFRPSPFPPTCCCC
LLLLHRRPDSRTHREVLVG
back to top

mRNA from alignment at C-linearis_contig93:201535..201778+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig93.16901.1 ID=mRNA_C-linearis_contig93.16901.1|Name=mRNA_C-linearis_contig93.16901.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=244bp|location=Sequence derived from alignment at C-linearis_contig93:201535..201778+ (Chordaria linearis ClinC8C monoicous)
CGGTACTTGCTAAACACGATGTGCACATCCGCGATAGTCACCGGAAGCAG
CTTCCCATCCCCCCGCATGAAAACTCACACCTTGACCCCCCTGTCCCCCG
TTGTGTACCGCTTTTCTACTGCTGTCTCCTTCCGTCCTTCCCCCTTTCCT
CCCACCTGCTGCTGCTGCGCCTGCTGCTGCTGCTCAGCTGCTGCTGCTGC
ATCGGCGGCCCGATTCCCGGACGCATAGGGAAGTACTGGTTGGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig93:201535..201778+

>mRNA_C-linearis_contig93.16901.1 ID=mRNA_C-linearis_contig93.16901.1|Name=mRNA_C-linearis_contig93.16901.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at C-linearis_contig93:201535..201778+ (Chordaria linearis ClinC8C monoicous)
ATGTGCACATCCGCGATAGTCACCGGAAGCAGCTTCCCATCCCCCCGCAT
GAAAACTCACACCTTGACCCCCCTGTCCCCCGTTGTGTACCGCTTTTCTA
CTGCTGTCTCCTTCCGTCCTTCCCCCTTTCCTCCCACCTGCTGCTGCTGC
ATGTGCACATCCGCGATAGTCACCGGAAGCAGCTTCCCATCCCCCCGCAT
GAAAACTCACACCTTGACCCCCCTGTCCCCCGTTGTGTACCGCTTTTCTA
CTGCTGTCTCCTTCCGTCCTTCCCCCTTTCCTCCCACCTGCTGCTGCTGC
CTGCTGCTGCTGCATCGGCGGCCCGATTCCCGGACGCATAGGGAAGTACT
GGTTGGGCTGCTGCTGCTGCATCGGCGGCCCGATTCCCGGACGCATAGGG
AAGTACTGGTTGGG
back to top