mRNA_C-linearis_contig92.16889.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig92.16889.1
Unique NamemRNA_C-linearis_contig92.16889.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig92.16889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig92contigC-linearis_contig92:639458..640192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size269
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig92.16889.1prot_C-linearis_contig92.16889.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig92 639490..640192 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.569841-UTR-C-linearis_contig92:639457..6394891622930790.569841-UTR-C-linearis_contig92:639457..639489Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 639458..639489 -
1690881251.831533-UTR-C-linearis_contig92:639457..6394891690881251.831533-UTR-C-linearis_contig92:639457..639489Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 639458..639489 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.5838144-CDS-C-linearis_contig92:639489..6396601622930790.5838144-CDS-C-linearis_contig92:639489..639660Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 639490..639660 -
1690881251.8540642-CDS-C-linearis_contig92:639489..6396601690881251.8540642-CDS-C-linearis_contig92:639489..639660Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 639490..639660 -
1622930790.601217-CDS-C-linearis_contig92:640126..6401921622930790.601217-CDS-C-linearis_contig92:640126..640192Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 640127..640192 -
1690881251.866207-CDS-C-linearis_contig92:640126..6401921690881251.866207-CDS-C-linearis_contig92:640126..640192Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 640127..640192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig92.16889.1

>prot_C-linearis_contig92.16889.1 ID=prot_C-linearis_contig92.16889.1|Name=mRNA_C-linearis_contig92.16889.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=79bp
MLTRSSDVLPVATHKRTHVHTCAGLFCCFCELKGARETGRGKNETRPRTH
GLPSNNLSVTRYSSHIGSLASKEKPGPM*
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mRNA from alignment at C-linearis_contig92:639458..640192-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig92.16889.1 ID=mRNA_C-linearis_contig92.16889.1|Name=mRNA_C-linearis_contig92.16889.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=735bp|location=Sequence derived from alignment at C-linearis_contig92:639458..640192- (Chordaria linearis ClinC8C monoicous)
ATGCTTACCCGTTCGAGCGATGTGCTTCCTGTCGCAACTCACAAACGCAC
ACACGTACACACGTGTGTGTGTGTGTTTTCGTCCCATTTATTTTGGCGAC
AGTTTTTTTTTTTCTTTGTTTTTTTTTTTTTGTTTTCCGATCAAGGCGAG
ACATGTACTACACGTTGCGGTGTATTTAGAGTACTACACTTGTTCAGTGT
ATTTTTCTGTACAACTAGAACCAACCGGGGTCACACAGGAGGGGTAAACA
CTGGGGCATTTTTCTTCTTTTTCTGTTTCTTTTTTGCCCCACCTTCCTCC
TGCGGTGCTTGGCTTGGATTTTATCGCGAGAAGGGTGCAGCCATCCCTTT
CCCTCGTCAACGTGCTAAGTCGAAGTTTGGTACTCACGAGCTTTTTCAGC
TATTTATCGCTTTCACCTGCAAAGTCGCAAAAGAAACACTTTTGCTTGGA
ATCGAACTCCAGACTTTGCTGCTAGTGGGTTCGAGGTTAAACCACTAGAT
AGTCCACCGGGGCGACCGGCTCACACACGTAGGCAGGTCTGTTTTGCTGT
TTTTGTGAATTAAAGGGAGCGCGAGAGACAGGGCGCGGAAAAAATGAAAC
ACGACCACGCACACACGGCCTACCTTCAAATAACCTCTCTGTTACTAGGT
ACTCTTCACACATTGGGTCACTTGCCTCGAAAGAGAAGCCAGGACCTATG
TAAGGCTGCCGCTTTGCCCGGAGCCCTCTGTCTCT
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Coding sequence (CDS) from alignment at C-linearis_contig92:639458..640192-

>mRNA_C-linearis_contig92.16889.1 ID=mRNA_C-linearis_contig92.16889.1|Name=mRNA_C-linearis_contig92.16889.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at C-linearis_contig92:639458..640192- (Chordaria linearis ClinC8C monoicous)
ATGCTTACCCGTTCGAGCGATGTGCTTCCTGTCGCAACTCACAAACGCAC
ACACGTACACACGTGTATGCTTACCCGTTCGAGCGATGTGCTTCCTGTCG
CAACTCACAAACGCACACACGTACACACGTGTGCAGGTCTGTTTTGCTGT
TTTTGTGAATTAAAGGGAGCGCGAGAGACAGGGCGCGGAAAAAATGAAAC
ACGACCACGCACACACGGCCTACCTTCAAATAACCTCTCTGTTACTAGGT
ACTCTTCACACATTGGGTCACTTGCCTCGAAAGAGAAGCCAGGACCTATG
TAAGCAGGTCTGTTTTGCTGTTTTTGTGAATTAAAGGGAGCGCGAGAGAC
AGGGCGCGGAAAAAATGAAACACGACCACGCACACACGGCCTACCTTCAA
ATAACCTCTCTGTTACTAGGTACTCTTCACACATTGGGTCACTTGCCTCG
AAAGAGAAGCCAGGACCTATGTAA
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