mRNA_C-linearis_contig92.16888.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig92.16888.1
Unique NamemRNA_C-linearis_contig92.16888.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig92.16888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig92contigC-linearis_contig92:618674..619854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size354
Cds size180
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig92.16888.1prot_C-linearis_contig92.16888.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig92 618674..619339 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.4204643-CDS-C-linearis_contig92:618673..6187721622930790.4204643-CDS-C-linearis_contig92:618673..618772Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 618674..618772 -
1690881251.7817712-CDS-C-linearis_contig92:618673..6187721690881251.7817712-CDS-C-linearis_contig92:618673..618772Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 618674..618772 -
1622930790.4394112-CDS-C-linearis_contig92:619258..6193391622930790.4394112-CDS-C-linearis_contig92:619258..619339Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 619259..619339 -
1690881251.794725-CDS-C-linearis_contig92:619258..6193391690881251.794725-CDS-C-linearis_contig92:619258..619339Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 619259..619339 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.4692845-UTR-C-linearis_contig92:619339..6193861622930790.4692845-UTR-C-linearis_contig92:619339..619386Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 619340..619386 -
1690881251.806797-UTR-C-linearis_contig92:619339..6193861690881251.806797-UTR-C-linearis_contig92:619339..619386Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 619340..619386 -
1622930790.4845834-UTR-C-linearis_contig92:619727..6198541622930790.4845834-UTR-C-linearis_contig92:619727..619854Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 619728..619854 -
1690881251.8184726-UTR-C-linearis_contig92:619727..6198541690881251.8184726-UTR-C-linearis_contig92:619727..619854Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 619728..619854 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig92.16888.1

>prot_C-linearis_contig92.16888.1 ID=prot_C-linearis_contig92.16888.1|Name=mRNA_C-linearis_contig92.16888.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=60bp
MLLGTSRRWKLQLMARRSSCRTRSRMDDGADRRSKERGGAHPPFLKRPGE
SSTGLEGSGW
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mRNA from alignment at C-linearis_contig92:618674..619854-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig92.16888.1 ID=mRNA_C-linearis_contig92.16888.1|Name=mRNA_C-linearis_contig92.16888.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1181bp|location=Sequence derived from alignment at C-linearis_contig92:618674..619854- (Chordaria linearis ClinC8C monoicous)
GAAGTCGCCGGGGGCAGGAGCCCAGCCGCCGCCGAAGAAATACCCGACTG
TAGACGACCAATGAATTTCCGATTCGTGAATGGCGTGTTTTGGTTGCTCC
AAAAGGCAGAGAGCACTCCGGACTCCCGTGAGTTTGTCGAGCTTCTGCTG
CTGAAACATTTCACGCCTACAGTAGCGCAGAACGATGCATGGCAAGTGTG
TCCCCAACCGTGTGCGTACGTACCATACATCCGTTTTCTTATGTTTCTTG
GTGAAAGTCAGCTCTTGTCGACACTCACAGAGCGATGCGGGGGTCCAAAA
CGTACCGATGACACAAGCAATAAGCAGTAGGCCACATATGCTGACATTTC
TTTCGTCCGAGATGGGGCATGCGGGCGCCTAATAGGAACCAAATATCTCT
GACAGCGCAGCAACAATTTCAGCCACCGTGCCTTTTCGTCTACTCTATTT
ACCAACATTTGCATACAGGCTTTACAAGAGGCTAGGCAACATGCTGAGCA
CGACGGTGCTGAAAGATGCTCCTTGGGACGTCGAGGCGGTGGAAACTGCA
GCTGATGGCGAGGCGATCCTCATGCCGTACACGGTCCAGGATGGATGTGA
GTCGTGGGCGGCGGCATGCTTTGCGAACAAGGGTGTCGTGCGTTACGTGT
TTGTTGGGACCTCGTGAGTTGAGTCGCACAGCTGTGGCACATACGCAGCA
GCGGCCACGTTTCAGGAGGGATGTCTCGAACGAGAGCTCGGAATTGAAGA
GAGTGGAAGTGCAAGCGTCTTTGTCACCACCCAATCAATAATGTACATTC
GACGACACACGTCGTCGCCTTGCATAGACCCCGCTCTCCCGAATCGCCGC
TCGTGTTGCTCTACTGACCAAGTACTAACAAAGCATCGCTGATGATCAAT
GCCCTGCAGTACGGAATCTCGTGGGTGCTGCTGTGCCGTGGTTGTCTTGC
GGCTATATACTGATAGTCAATTCATGTACAGCCTCGAAAGCGAGAAGCAT
AATGGAAGGTACAAGCGACCTCGATCTGGTTGGTTCGGTTTGTTTTGTTT
TTTTCTGATGCGCCCGTTTGCTGACATCACAGGATGGAGCCGACCGACGC
TCGAAGGAACGTGGCGGAGCACACCCGCCGTTCCTGAAGCGACCTGGGGA
GAGCAGCACGGGTTTGGAAGGAAGCGGGTGG
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Coding sequence (CDS) from alignment at C-linearis_contig92:618674..619854-

>mRNA_C-linearis_contig92.16888.1 ID=mRNA_C-linearis_contig92.16888.1|Name=mRNA_C-linearis_contig92.16888.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at C-linearis_contig92:618674..619854- (Chordaria linearis ClinC8C monoicous)
ATGCTCCTTGGGACGTCGAGGCGGTGGAAACTGCAGCTGATGGCGAGGCG
ATCCTCATGCCGTACACGGTCCAGGATGGATATGCTCCTTGGGACGTCGA
GGCGGTGGAAACTGCAGCTGATGGCGAGGCGATCCTCATGCCGTACACGG
TCCAGGATGGATGATGGAGCCGACCGACGCTCGAAGGAACGTGGCGGAGC
ACACCCGCCGTTCCTGAAGCGACCTGGGGAGAGCAGCACGGGTTTGGAAG
GAAGCGGGTGGGATGGAGCCGACCGACGCTCGAAGGAACGTGGCGGAGCA
CACCCGCCGTTCCTGAAGCGACCTGGGGAGAGCAGCACGGGTTTGGAAGG
AAGCGGGTGG
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