mRNA_C-linearis_contig92.16887.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig92.16887.1
Unique NamemRNA_C-linearis_contig92.16887.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig92.16887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig92contigC-linearis_contig92:602554..603015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size440
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig92.16887.1prot_C-linearis_contig92.16887.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig92 602645..603005 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.3301883-UTR-C-linearis_contig92:602553..6026441622930790.3301883-UTR-C-linearis_contig92:602553..602644Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 602554..602644 +
1690881251.734724-UTR-C-linearis_contig92:602553..6026441690881251.734724-UTR-C-linearis_contig92:602553..602644Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 602554..602644 +
1622930790.3783069-UTR-C-linearis_contig92:603005..6030151622930790.3783069-UTR-C-linearis_contig92:603005..603015Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 603006..603015 +
1690881251.7687147-UTR-C-linearis_contig92:603005..6030151690881251.7687147-UTR-C-linearis_contig92:603005..603015Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 603006..603015 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.3482625-CDS-C-linearis_contig92:602644..6028781622930790.3482625-CDS-C-linearis_contig92:602644..602878Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 602645..602878 +
1690881251.74721-CDS-C-linearis_contig92:602644..6028781690881251.74721-CDS-C-linearis_contig92:602644..602878Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 602645..602878 +
1622930790.3631485-CDS-C-linearis_contig92:602900..6030051622930790.3631485-CDS-C-linearis_contig92:602900..603005Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 602901..603005 +
1690881251.758268-CDS-C-linearis_contig92:602900..6030051690881251.758268-CDS-C-linearis_contig92:602900..603005Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 602901..603005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig92.16887.1

>prot_C-linearis_contig92.16887.1 ID=prot_C-linearis_contig92.16887.1|Name=mRNA_C-linearis_contig92.16887.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=113bp
MSAMENVSTFDSEDYPDWDDTPESMKKFIKDEYDARQVAEAELLLLRYER
QEDSDRGREAEAARAANPEQEADATGAARQPPAPLPFGERGILLFEGTLL
PLLEGARPLLEG*
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mRNA from alignment at C-linearis_contig92:602554..603015+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig92.16887.1 ID=mRNA_C-linearis_contig92.16887.1|Name=mRNA_C-linearis_contig92.16887.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=462bp|location=Sequence derived from alignment at C-linearis_contig92:602554..603015+ (Chordaria linearis ClinC8C monoicous)
ACTTGCAAGAAGATAATACATGAACGAGTGCGAGCAGCACCATCTACGGT
TTACCCATTACGCTAGAGTCTCGGTACCGTGAGTGGATGCTATGAGCGCT
ATGGAGAACGTGTCTACGTTCGACAGTGAAGACTATCCTGACTGGGATGA
TACACCGGAGTCCATGAAGAAGTTCATCAAGGACGAGTACGACGCACGCC
AAGTAGCAGAGGCGGAGCTGCTTCTTCTCCGTTACGAGAGACAAGAAGAT
TCAGATAGAGGCCGGGAGGCGGAAGCTGCGCGCGCCGCCAATCCTGAGCA
AGAGGCGGACGCCACCGGCGCCGCCGCGGACGTCACCGGCGCCGCAGCGG
CAGCCACCGGCGCCGCTACCCTTCGGAGAGAGAGGAATACTCCTCTTCGA
GGGAACACTACTACCCCTCTTGGAGGGAGCACGACCCCTCTTGGAGGGGT
AGGGAGGGTTTC
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Coding sequence (CDS) from alignment at C-linearis_contig92:602554..603015+

>mRNA_C-linearis_contig92.16887.1 ID=mRNA_C-linearis_contig92.16887.1|Name=mRNA_C-linearis_contig92.16887.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at C-linearis_contig92:602554..603015+ (Chordaria linearis ClinC8C monoicous)
ATGAGCGCTATGGAGAACGTGTCTACGTTCGACAGTGAAGACTATCCTGA
CTGGGATGATACACCGGAGTCCATGAAGAAGTTCATCAAGGACGAGTACG
ACGCACGCCAAGTAGCAGAGGCGGAGCTGCTTCTTCTCCGTTACGAGAGA
CAAGAAGATTCAGATAGAGGCCGGGAGGCGGAAGCTGCGCGCGCCGCCAA
TCCTGAGCAAGAGGCGGACGCCACCGGCGCCGCCATGAGCGCTATGGAGA
ACGTGTCTACGTTCGACAGTGAAGACTATCCTGACTGGGATGATACACCG
GAGTCCATGAAGAAGTTCATCAAGGACGAGTACGACGCACGCCAAGTAGC
AGAGGCGGAGCTGCTTCTTCTCCGTTACGAGAGACAAGAAGATTCAGATA
GAGGCCGGGAGGCGGAAGCTGCGCGCGCCGCCAATCCTGAGCAAGAGGCG
GACGCCACCGGCGCCGCCCGGCAGCCACCGGCGCCGCTACCCTTCGGAGA
GAGAGGAATACTCCTCTTCGAGGGAACACTACTACCCCTCTTGGAGGGAG
CACGACCCCTCTTGGAGGGGTAGCGGCAGCCACCGGCGCCGCTACCCTTC
GGAGAGAGAGGAATACTCCTCTTCGAGGGAACACTACTACCCCTCTTGGA
GGGAGCACGACCCCTCTTGGAGGGGTAG
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