mRNA_C-linearis_contig92.16872.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig92.16872.1
Unique NamemRNA_C-linearis_contig92.16872.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig92.16872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig92contigC-linearis_contig92:308562..309505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size169
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930789.9100955-CDS-C-linearis_contig92:308561..3086051622930789.9100955-CDS-C-linearis_contig92:308561..308605Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 308562..308605 -
1690881251.5437918-CDS-C-linearis_contig92:308561..3086051690881251.5437918-CDS-C-linearis_contig92:308561..308605Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 308562..308605 -
1622930789.9312904-CDS-C-linearis_contig92:309381..3095051622930789.9312904-CDS-C-linearis_contig92:309381..309505Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 309382..309505 -
1690881251.5625925-CDS-C-linearis_contig92:309381..3095051690881251.5625925-CDS-C-linearis_contig92:309381..309505Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 309382..309505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig92.16872.1prot_C-linearis_contig92.16872.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig92 308562..309505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig92.16872.1

>prot_C-linearis_contig92.16872.1 ID=prot_C-linearis_contig92.16872.1|Name=mRNA_C-linearis_contig92.16872.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=56bp
LVLTLGLLVPGLAARMDSRCQASLAPLLLRIPAFLARLESPGPPGTRTRH
LRTGSF
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mRNA from alignment at C-linearis_contig92:308562..309505-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig92.16872.1 ID=mRNA_C-linearis_contig92.16872.1|Name=mRNA_C-linearis_contig92.16872.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=944bp|location=Sequence derived from alignment at C-linearis_contig92:308562..309505- (Chordaria linearis ClinC8C monoicous)
CTGGTGCTCACACTAGGCCTTCTCGTTCCAGGGCTCGCCGCGAGGATGGA
CAGTCGGTGTCAGGCGTCTCTCGCGCCGCTTCTGCTTCGGATACCAGCCT
TCCTCGCGAGGTTGGAAAGTCCAGGCAAGTTCCGTCCCTCGTTGACGTTT
CGATTGGAGATCAATTAGTCGCCCTTTTGCACCAGGCAGGTGTGCGTTCT
AGCACTGTTTTGCCAGACAACACTGCTTCGGTTGTTGCCAGCTCTCAAAA
TTGAGCGTGTTGATATATGGTACTCCGTATATACTTCGTATATATATATA
CTTTTCCAAGTATATACTCCGTATATACTACGAAGTATATATACTGCTGT
TTCTAGCCCTGACGTTCCTGTCAAAATTGAGCCGGTGGACCCCGTCCCCG
CTCCTTCTGCTTCTGTTGTCGATGTAGACAACGCCGCTGCTGCTGCTGTT
GACCCCTGGCCAGCCGTTTCTGTTGCTGTGTTTCCAGCTGTTCCTGCTTC
AGCCCCTGTCGATGACAGTTCTTTGCCTGTCTCGTCCACTCTTGCTCACG
CCCTCCAAGCTAATGTCGATGTTGCCGATGCGGCAGCCGACGTGGAGCGT
GTAGCTAAAGTTAAACGTGCGTATGTCACCATCAACATGAAAAACGTTGG
TCATGTGGCAACGATCCCGTTTGCTTCATCTTTATCACAAGCTGATTCTT
ATTCACAGCTTATTCGAACCGTCAAAGCTGCCATGACCGACATTCTGGTG
TACTGCGATGACTCCTGCCCTGGGCTCGCCGCCACATACTACGTCTCTGG
TTGGGAGCTCCCACTTGAGAAACGACTTTTGTCTGCTATCACTCCTGATA
AGCCCTTCTCTTCCGACCTCACCCTTTCGATCGTGGACTATTTCGAGCAG
GTCCGCCGGGCACTAGAACAAGGCACCTCCGGACCGGAAGCTTT
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Coding sequence (CDS) from alignment at C-linearis_contig92:308562..309505-

>mRNA_C-linearis_contig92.16872.1 ID=mRNA_C-linearis_contig92.16872.1|Name=mRNA_C-linearis_contig92.16872.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at C-linearis_contig92:308562..309505- (Chordaria linearis ClinC8C monoicous)
CTGGTGCTCACACTAGGCCTTCTCGTTCCAGGGCTCGCCGCGAGGATGGA
CAGTCGGTGTCAGGCGTCTCTCGCGCCGCTTCTGCTTCGGATACCAGCCT
TCCTCGCGAGGTTGGAAAGTCCAGCTGGTGCTCACACTAGGCCTTCTCGT
TCCAGGGCTCGCCGCGAGGATGGACAGTCGGTGTCAGGCGTCTCTCGCGC
CGCTTCTGCTTCGGATACCAGCCTTCCTCGCGAGGTTGGAAAGTCCAGGT
CCGCCGGGCACTAGAACAAGGCACCTCCGGACCGGAAGCTTTGTCCGCCG
GGCACTAGAACAAGGCACCTCCGGACCGGAAGCTTT
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