mRNA_C-linearis_contig92.16863.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig92.16863.1
Unique NamemRNA_C-linearis_contig92.16863.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig92.16863.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 3.200e-66
Identity = 118/159 (74.21%), Postives = 126/159 (79.25%), Query Frame = 1
Query:    1 MPSTLSKASGSVERAVATTDINRGCGDTNQTPLMVASVIGSSRVVRDLLRQGARVSVADSDGYTALHHSVYHKHLAVSKDLIEGGADLEAKPGGFMADGVYGTPLHVAVTKGFYQGIVMLIDAGANVDSRLDDEAAPLSFAARDGWLEAVTVLLPANAN 477
            MPSTLSKASGS++  +ATT I+RGCGDTNQTPLMVASVIGSSRVVRDLLRQGA VSVADSDG TALHHSVYH HLAVSKDLIE GADLEA+ GG        TPLHVA TKGF QG+ +L+D      SRLDD A PL  AA DG LEAV VLL ANAN
Sbjct:    1 MPSTLSKASGSIDPTIATTGIDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGG------KDTPLHVAATKGFCQGMKLLMD------SRLDDGATPLFLAASDGRLEAVRVLLRANAN 147          
BLAST of mRNA_C-linearis_contig92.16863.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.100e-44
Identity = 83/93 (89.25%), Postives = 87/93 (93.55%), Query Frame = 1
Query:    1 MPSTLSKASGSVERAVATTDINRGCGDTNQTPLMVASVIGSSRVVRDLLRQGARVSVADSDGYTALHHSVYHKHLAVSKDLIEGGADLEAKPG 279
            MPSTLSKASGSVERAVATTDI+R CGDTN TPLMVASVIGSSRVV+DLLRQGA VSVADSDGYTALHHSVYH+HLAVS  LIE GADLEA+PG
Sbjct:    1 MPSTLSKASGSVERAVATTDIDRRCGDTNHTPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEARPG 93          
BLAST of mRNA_C-linearis_contig92.16863.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 1.680e-44
Identity = 86/107 (80.37%), Postives = 92/107 (85.98%), Query Frame = 1
Query:   25 SGSVERAVATTDINRGCGDTNQTPLMVASVIGSSRVVRDLLRQGARVSVADSDGYTALHHSVYHKHLAVSKDLIEGGADLEAKPGGFMADGVYGTPLHVAVTKGFYQ 345
            SGSVER +ATTDI+R CGDTNQTPLMVASVIGSSRVVRDLLRQGA VS+ADSDGY ALHH+VYHKHLAVSKDLIE GADL+A+PGG        TPLHVA TKGF Q
Sbjct:  399 SGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGID------TPLHVAATKGFCQ 499          
BLAST of mRNA_C-linearis_contig92.16863.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 5.340e-42
Identity = 97/169 (57.40%), Postives = 115/169 (68.05%), Query Frame = 1
Query:    1 MPSTLSK-----ASGSVERAVA-----TTDINRGCGDTNQTPLMVASVIGSSRVVRDLLRQGARVSVADSDGYTALHHSVYHKHLAVSKDLIEGGADLEAKPGGFMADGVYGTPLHVAVTKGFYQGIVMLIDAGANVDSRLDDEAAPLSFAARDGWLEAVTVLLPANAN 477
            MPSTLSK     ASGSVER VA     + DI+ G GD  +TPLM A  +G  RVVR LLR GARVSVAD+DG TALH S+ +KHLAVSK L++ GA +EA+       GV GTPLHVA  KGF++G+VMLI AGANVDS  +  A PL  +AR G LE V +L+ A  N
Sbjct:    1 MPSTLSKLYHAPASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAAFTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEAR-------GVDGTPLHVAAAKGFHKGMVMLIHAGANVDSEQEGRATPLYISARQGRLEDVRILVGAKVN 162          
BLAST of mRNA_C-linearis_contig92.16863.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 1.620e-35
Identity = 80/134 (59.70%), Postives = 95/134 (70.90%), Query Frame = 1
Query:    1 MPSTLSK-----ASGSVERAVA-----TTDINRGCGDTNQTPLMVASVIGSSRVVRDLLRQGARVSVADSDGYTALHHSVYHKHLAVSKDLIEGGADLEAKPGGFMADGVYGTPLHVAVTKGFYQGIVMLIDAG 372
            MPSTLSK     ASGSVER VA     + +I+ G GD  +TPLM AS +G  RVVR LLR GARVSVAD+DG TALH S+ +KHLAVSK L++ GA +EA+       GV GTPLHVA  KGF++G+VMLI AG
Sbjct:    1 MPSTLSKLYDAAASGSVERTVAVLSQGSVNIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEAR-------GVDGTPLHVAAAKGFHKGMVMLIHAG 127          
BLAST of mRNA_C-linearis_contig92.16863.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 4.520e-35
Identity = 69/79 (87.34%), Postives = 73/79 (92.41%), Query Frame = 1
Query:    1 MPSTLSKASGSVERAVATTDINRGCGDTNQTPLMVASVIGSSRVVRDLLRQGARVSVADSDGYTALHHSVYHKHLAVSK 237
            MPSTLSKASGS +  +ATTDI+R CGDTNQTPLMVASVIG SRVVRDLLRQGA VSVADSDGYTALHH+VYHKHLAVSK
Sbjct:    7 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSK 85          
BLAST of mRNA_C-linearis_contig92.16863.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 2.680e-34
Identity = 79/135 (58.52%), Postives = 93/135 (68.89%), Query Frame = 1
Query:    1 MPSTLSK-----ASGSVERAVA-----TTDINRGCGDTNQTPLMVASVIGSSRVVRDLLRQGARVSVADSDGYTALHHSVYHKHLAVSKDLIEGGADLEAKPGGFMADGVYGTPLHVAVTKGFYQGIVMLIDAGA 375
            MPSTLSK     ASGSVER VA     + DI+ G GD  +TPLM AS +G  RVVR LLR GARVSVAD+DG TALH S+  KHLAVS+ L++ GA +EA+       GV GTPLHVA  KGF++G+VMLI   A
Sbjct:    1 MPSTLSKLYDAAASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIVIKHLAVSRALVKAGAGVEAR-------GVDGTPLHVAAAKGFHKGMVMLIHVDA 128          
BLAST of mRNA_C-linearis_contig92.16863.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 4.440e-27
Identity = 75/160 (46.88%), Postives = 103/160 (64.38%), Query Frame = 1
Query:   22 ASGSVERAV-----ATTDINRGCGDTNQTPLMVASVIGSSRVVRDLLRQGARVSVADSDGYTALHHSVYHKHLAVSKDLIEGGADLEAKPG--GFMADGVYG-TPLHVAVTKGFYQGIVMLIDAGANVDSRLDDEAAPLSFAARDGWLEAVTVLLPANAN 477
            +SGSVER +       T+I+R C +   T LM A+  G  R+VR LLR GA VSV+  DG+TALH ++  ++LAV+K LI+ GA++EAK       ++ V G TPLH+A  +GF +G+V LI+AGANVDSR+ D +  +  AA  G LEAV +L    AN
Sbjct:   26 SSGSVERTLDLLSGGFTEIDRRCDEHGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGANVDSRMSDGSTAMYIAACLGNLEAVEILFQKKAN 185          
BLAST of mRNA_C-linearis_contig92.16863.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.530e-26
Identity = 68/128 (53.12%), Postives = 82/128 (64.06%), Query Frame = 1
Query:  103 VASVIGSSRVVRDLLRQGARVSVADSDGYTALHHSVYHKHLAVSKDLIEGGADLEAKPGGFMADGVYGTPLHVAVTKGFYQGIVMLIDAGAN---------VDSRLDDEAAPLSFAARDGWLEAVTVL 459
            VAS +G  RVVR LLR GARVS AD+DG TALH S+ +KHLAVSK L++ GADLEA+     A GV  TPLHVA  KGF++G+VMLI AG           + +  D E+ PL  AA +G L  V  L
Sbjct:   37 VASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHAGVKGFVGAKANPILAAYDGESLPLDVAAENGQLGVVREL 164          
BLAST of mRNA_C-linearis_contig92.16863.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 2.300e-14
Identity = 66/172 (38.37%), Postives = 84/172 (48.84%), Query Frame = 1
Query:    1 MPSTLSKA-----SGSVERAV-----ATTDINRGCGDTNQTPLMVASVIGSSRVVRDLLRQGARVSVADSDGYTALHHSVYHKHLAVSKDLIEGGADLEAKPGGFMADG--VYG-TPLHVAVTKGFYQGIVMLIDAGANVDSRLDDEAAPLSFAARDGWLEAVTVLLPANAN 477
            MPST S       +GSVER +       T+I+R C +   T LM A+  G  R+VR LLR GA VSV+  DG+                           K      D   V G TPLH+A  +GF  G+V LIDAGANVDSR+ + +  +  AA  G L+AV +LL   AN
Sbjct:    1 MPSTTSTLYNAAWTGSVERTLDLLSDGFTEIDRRCEENGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXKADFLHPDQEVVQGQTPLHLATGEGFCDGMVALIDAGANVDSRMSNGSTAMYIAACTGNLDAVKILLQERAN 172          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig92.16863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH66_ECTSI3.200e-6674.21EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JHQ8_9PHAE1.100e-4489.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1W5_9PHAE1.680e-4480.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL58_9PHAE5.340e-4257.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G449_ECTSI1.620e-3559.70EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5L5L0_9PHAE4.520e-3587.34Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G2C8_ECTSI2.680e-3458.52EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KSL5_9PHAE4.440e-2746.88Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6H5JNS0_9PHAE3.530e-2653.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP44_ECTSI2.300e-1438.37EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig92contigC-linearis_contig92:176539..177015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.7
Seed ortholog evalue5e-52
Seed eggNOG ortholog2880.D8LH66
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size477
Cds size477
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930792.4466512-CDS-C-linearis_contig92:176538..1770151622930792.4466512-CDS-C-linearis_contig92:176538..177015Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 176539..177015 +
1690881252.8044877-CDS-C-linearis_contig92:176538..1770151690881252.8044877-CDS-C-linearis_contig92:176538..177015Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 176539..177015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig92.16863.1prot_C-linearis_contig92.16863.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig92 176539..177015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig92.16863.1

>prot_C-linearis_contig92.16863.1 ID=prot_C-linearis_contig92.16863.1|Name=mRNA_C-linearis_contig92.16863.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=159bp
MPSTLSKASGSVERAVATTDINRGCGDTNQTPLMVASVIGSSRVVRDLLR
QGARVSVADSDGYTALHHSVYHKHLAVSKDLIEGGADLEAKPGGFMADGV
YGTPLHVAVTKGFYQGIVMLIDAGANVDSRLDDEAAPLSFAARDGWLEAV
TVLLPANAN
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mRNA from alignment at C-linearis_contig92:176539..177015+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig92.16863.1 ID=mRNA_C-linearis_contig92.16863.1|Name=mRNA_C-linearis_contig92.16863.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=477bp|location=Sequence derived from alignment at C-linearis_contig92:176539..177015+ (Chordaria linearis ClinC8C monoicous)
ATGCCATCAACTCTGAGCAAAGCCAGCGGCTCCGTTGAGCGTGCGGTTGC TACGACCGACATCAACCGAGGCTGTGGTGATACGAACCAGACACCGCTGA TGGTGGCCTCCGTCATTGGTTCCTCGCGCGTTGTTAGAGACCTTCTGAGG CAGGGTGCCAGAGTCTCGGTAGCGGACAGCGACGGTTATACTGCTCTGCA CCACTCGGTTTATCATAAGCATCTGGCCGTCAGCAAAGACCTGATCGAGG GGGGAGCGGACCTTGAAGCGAAGCCCGGTGGCTTCATGGCGGATGGTGTT TATGGTACACCACTTCACGTGGCCGTGACGAAAGGTTTTTACCAAGGAAT AGTGATGCTGATCGACGCAGGCGCGAATGTGGACAGCAGGCTCGACGACG AGGCGGCACCTCTGTCCTTCGCGGCAAGGGATGGGTGGCTGGAAGCGGTC ACGGTTCTCCTTCCGGCGAACGCGAAT
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Coding sequence (CDS) from alignment at C-linearis_contig92:176539..177015+

>mRNA_C-linearis_contig92.16863.1 ID=mRNA_C-linearis_contig92.16863.1|Name=mRNA_C-linearis_contig92.16863.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at C-linearis_contig92:176539..177015+ (Chordaria linearis ClinC8C monoicous)
ATGCCATCAACTCTGAGCAAAGCCAGCGGCTCCGTTGAGCGTGCGGTTGC
TACGACCGACATCAACCGAGGCTGTGGTGATACGAACCAGACACCGCTGA
TGGTGGCCTCCGTCATTGGTTCCTCGCGCGTTGTTAGAGACCTTCTGAGG
CAGGGTGCCAGAGTCTCGGTAGCGGACAGCGACGGTTATACTGCTCTGCA
CCACTCGGTTTATCATAAGCATCTGGCCGTCAGCAAAGACCTGATCGAGG
GGGGAGCGGACCTTGAAGCGAAGCCCGGTGGCTTCATGGCGGATGGTGTT
TATGGTACACCACTTCACGTGGCCGTGACGAAAGGTTTTTACCAAGGAAT
AGTGATGCTGATCGACGCAGGCGCGAATGTGGACAGCAGGCTCGACGACG
AGGCGGCACCTCTGTCCTTCGCGGCAAGGGATGGGTGGCTGGAAGCGGTC
ACGGTTCTCCTTCCGGCGAACGCGAATATGCCATCAACTCTGAGCAAAGC
CAGCGGCTCCGTTGAGCGTGCGGTTGCTACGACCGACATCAACCGAGGCT
GTGGTGATACGAACCAGACACCGCTGATGGTGGCCTCCGTCATTGGTTCC
TCGCGCGTTGTTAGAGACCTTCTGAGGCAGGGTGCCAGAGTCTCGGTAGC
GGACAGCGACGGTTATACTGCTCTGCACCACTCGGTTTATCATAAGCATC
TGGCCGTCAGCAAAGACCTGATCGAGGGGGGAGCGGACCTTGAAGCGAAG
CCCGGTGGCTTCATGGCGGATGGTGTTTATGGTACACCACTTCACGTGGC
CGTGACGAAAGGTTTTTACCAAGGAATAGTGATGCTGATCGACGCAGGCG
CGAATGTGGACAGCAGGCTCGACGACGAGGCGGCACCTCTGTCCTTCGCG
GCAAGGGATGGGTGGCTGGAAGCGGTCACGGTTCTCCTTCCGGCGAACGC
GAAT
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