mRNA_C-linearis_contig92.16853.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig92.16853.1
Unique NamemRNA_C-linearis_contig92.16853.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig92.16853.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI)

HSP 1 Score: 297 bits (761), Expect = 8.990e-101
Identity = 165/188 (87.77%), Postives = 172/188 (91.49%), Query Frame = 1
Query:    1 MPSTLSKLYAAAARGSVERTVALLSGGSVDIDGGYGDVSRTPLMAASTMGYMRVVRVLLRVGARVSVADNDGATALHLSIVNKRLAVSKALIKAGADVEARGVDGTPLHVAAAKGFHKGLVMLIHAAGGCSSLDLLMLAERAREINADRSHAAGSEAQGVEAS--CALGGPVQVQQQARRTVPGVLSG 558
            MPSTLSKLY AAA GSVERTVA+LS GSV+IDGGYGDV RTPLMAASTMGY+RVVRVLLR+GARVSVADNDGATALHLSIVNK LAVSKAL+KAGA VEARGVDGTPLHVAAAKGFHKG+VMLIHA GGCSS DLL+LAER  EINADRSHAAGSEAQG EAS  C LGGPVQVQQQ  RTVPGVLSG
Sbjct:    1 MPSTLSKLYDAAASGSVERTVAVLSQGSVNIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHA-GGCSSRDLLVLAERLGEINADRSHAAGSEAQGDEASGGCGLGGPVQVQQQGGRTVPGVLSG 187          
BLAST of mRNA_C-linearis_contig92.16853.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 9.200e-66
Identity = 112/125 (89.60%), Postives = 117/125 (93.60%), Query Frame = 1
Query:    1 MPSTLSKLYAAAARGSVERTVALLSGGSVDIDGGYGDVSRTPLMAASTMGYMRVVRVLLRVGARVSVADNDGATALHLSIVNKRLAVSKALIKAGADVEARGVDGTPLHVAAAKGFHKGLVMLIH 375
            MPSTLSKLY AAA GSVERTVA+LS GSVDIDGGYGDV RTPLMAASTMGY+RVVRVLLR GARVSVADNDGATALHLSIV K LAVS+AL+KAGA VEARGVDGTPLHVAAAKGFHKG+VMLIH
Sbjct:    1 MPSTLSKLYDAAASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIVIKHLAVSRALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIH 125          
BLAST of mRNA_C-linearis_contig92.16853.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 4.440e-61
Identity = 114/132 (86.36%), Postives = 119/132 (90.15%), Query Frame = 1
Query:    1 MPSTLSKLYAAAARGSVERTVALLSGGSVDIDGGYGDVSRTPLMAASTMGYMRVVRVLLRVGARVSVADNDGATALHLSIVNKRLAVSKALIKAGADVEARGVDGTPLHVAAAKGFHKGLVMLIHAAGGCSS 396
            MPSTLSKLY A A GSVERTVA+LS GSVDIDGGYGDV RTPLMAA TMGY+RVVRVLLR+GARVSVADNDGATALHLSIVNK LAVSKAL+KAGA VEARGVDGTPLHVAAAKGFHKG+VMLIHA     S
Sbjct:    1 MPSTLSKLYHAPASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAAFTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHAGANVDS 132          
BLAST of mRNA_C-linearis_contig92.16853.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 1.860e-37
Identity = 85/123 (69.11%), Postives = 92/123 (74.80%), Query Frame = 1
Query:   28 AAAARGSVERTVALLSGGSVDIDGGYGDVSRTPLMAASTMGYMRVVRVLLRVGARVSVADNDGATALHLSIVNKRLAVSKALIKAGADVEARGVDGTPLHVAAAKGFHKGLVMLIHAAGGCSS 396
            A  ARGSVERTVALLS GSVDIDG YGD  RTPLM ASTMGY+RV RVLLR+GA VSVADNDGATALHLS+ N+ LAVSKALIKAGA+VEAR VDG              +V+LIHA     S
Sbjct:    2 ATTARGSVERTVALLSRGSVDIDGSYGDAGRTPLMVASTMGYLRVERVLLRLGAGVSVADNDGATALHLSVFNQHLAVSKALIKAGAEVEARCVDG--------------MVVLIHAGANVDS 110          
BLAST of mRNA_C-linearis_contig92.16853.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.580e-33
Identity = 72/88 (81.82%), Postives = 77/88 (87.50%), Query Frame = 1
Query:  136 ASTMGYMRVVRVLLRVGARVSVADNDGATALHLSIVNKRLAVSKALIKAGADVEAR-------GVDGTPLHVAAAKGFHKGLVMLIHA 378
            ASTMGY+RVVRVLLR+GARVS ADNDGATALHLSIVNK LAVSKAL+KAGAD+EAR       GV  TPLHVAAAKGFHKG+VMLIHA
Sbjct:   38 ASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHA 125          
BLAST of mRNA_C-linearis_contig92.16853.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 7.290e-29
Identity = 72/125 (57.60%), Postives = 88/125 (70.40%), Query Frame = 1
Query:    1 MPSTLSKLYAAAARGSVERTVALLSGGSVDIDGGYGDVSRTPLMAASTMGYMRVVRVLLRVGARVSVADNDGATALHLSIVNKRLAVSKALIKAGADVEAR-GVDGTPLHVAAAKGFHKGLVMLI 372
            MPSTLSK     A GS++ T+A     +  ID G GD ++TPLM AS +G  RVVR LLR GA VSVAD+DG TALH S+ +  LAVSK LI+AGAD+EAR G   TPLHVAA KGF +G+ +L+
Sbjct:    1 MPSTLSK-----ASGSIDPTIA-----TTGIDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGGKDTPLHVAATKGFCQGMKLLM 115          
BLAST of mRNA_C-linearis_contig92.16853.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 3.330e-28
Identity = 76/143 (53.15%), Postives = 96/143 (67.13%), Query Frame = 1
Query:    1 MPSTLSK-LYAAAARGSVERTVALLSGGSVDIDGGYGDVSRTPLMAASTMGYMRVVRVLLRVGARVSVADNDGATALHLSIVNKRLAVSKALIKAGADVEARG---------VDG-TPLHVAAAKGFHKGLVMLIHAAGGCSS 396
            +PST S  LY AA+ GSVERT+ LLSGG  +ID    +   T LM A+  GY+R+VRVLLR GA VSV+ +DG TALH +I  + LAV+KALIKAGA+VEA+          V G TPLH+AA +GF +G+V LI+A     S
Sbjct:   13 VPSTTSDTLYCAASSGSVERTLDLLSGGFTEIDRRCDEHGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGANVDS 155          
BLAST of mRNA_C-linearis_contig92.16853.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.550e-14
Identity = 42/71 (59.15%), Postives = 49/71 (69.01%), Query Frame = 2
Query:  377 RQVDAVHSIS*CWP---------SVLEKSMPIVRMLPGLKRRASKPRVLLAALSRYNNKQDGPFLGYSPDK 562
            RQ +AVHS+S  WP         +  +K   I RM+P LKRRA+KPRVLLAALSRYN KQDG FLGY P+K
Sbjct:  411 RQEEAVHSVSWTWPIDNGRSVERASRKKPTSIARMVPLLKRRAAKPRVLLAALSRYNEKQDGAFLGYLPEK 481          
BLAST of mRNA_C-linearis_contig92.16853.1 vs. uniprot
Match: D8LJ25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ25_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 8.700e-13
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 2
Query:  452 MLPGLKRRASKPRVLLAALSRYNNKQDGPFLGYSPDKN 565
            MLP LK RA+KPRVLLAA+SRYNNKQDGPFLGY P+KN
Sbjct:    1 MLPLLKLRAAKPRVLLAAMSRYNNKQDGPFLGYLPEKN 38          
BLAST of mRNA_C-linearis_contig92.16853.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.510e-12
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 2
Query:  377 RQVDAVHSIS*CWP---------SVLEKSMPIVRMLPGLKRRASKPRVLLAALSRYNNKQDGPFLG 547
            RQ +AVH++S  WP         +  +KS  I RMLP LKRRA+KPRVLLAA+SRYNNK DG FLG
Sbjct:  357 RQEEAVHAVSWTWPIDTGRSVERASRKKSTSIARMLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLG 422          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig92.16853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7G449_ECTSI8.990e-10187.77EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G2C8_ECTSI9.200e-6689.60EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JL58_9PHAE4.440e-6186.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1W5_9PHAE1.860e-3769.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNS0_9PHAE1.580e-3381.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH66_ECTSI7.290e-2957.60EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KSL5_9PHAE3.330e-2853.15Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6H5L5L0_9PHAE2.550e-1459.15Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LJ25_ECTSI8.700e-1384.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHQ8_9PHAE2.510e-1259.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig92contigC-linearis_contig92:49487..50842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score298.5
Seed ortholog evalue2.2e-78
Seed eggNOG ortholog2880.D7G449
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1082@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size571
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig92.16853.1prot_C-linearis_contig92.16853.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig92 49497..50842 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930791.3111374-UTR-C-linearis_contig92:49486..494961622930791.3111374-UTR-C-linearis_contig92:49486..49496Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 49487..49496 -
1690881252.227087-UTR-C-linearis_contig92:49486..494961690881252.227087-UTR-C-linearis_contig92:49486..49496Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 49487..49496 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930791.3412387-CDS-C-linearis_contig92:49496..495441622930791.3412387-CDS-C-linearis_contig92:49496..49544Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 49497..49544 -
1690881252.2408173-CDS-C-linearis_contig92:49496..495441690881252.2408173-CDS-C-linearis_contig92:49496..49544Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 49497..49544 -
1622930791.3623235-CDS-C-linearis_contig92:49640..497741622930791.3623235-CDS-C-linearis_contig92:49640..49774Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 49641..49774 -
1690881252.254508-CDS-C-linearis_contig92:49640..497741690881252.254508-CDS-C-linearis_contig92:49640..49774Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 49641..49774 -
1622930791.3773146-CDS-C-linearis_contig92:50463..508421622930791.3773146-CDS-C-linearis_contig92:50463..50842Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 50464..50842 -
1690881252.2725093-CDS-C-linearis_contig92:50463..508421690881252.2725093-CDS-C-linearis_contig92:50463..50842Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 50464..50842 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig92.16853.1

>prot_C-linearis_contig92.16853.1 ID=prot_C-linearis_contig92.16853.1|Name=mRNA_C-linearis_contig92.16853.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=187bp
MPSTLSKLYAAAARGSVERTVALLSGGSVDIDGGYGDVSRTPLMAASTMG
YMRVVRVLLRVGARVSVADNDGATALHLSIVNKRLAVSKALIKAGADVEA
RGVDGTPLHVAAAKGFHKGLVMLIHAAGGCSSLDLLMLAERAREINADRS
HAAGSEAQGVEASCALGGPVQVQQQARRTVPGVLSG*
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mRNA from alignment at C-linearis_contig92:49487..50842-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig92.16853.1 ID=mRNA_C-linearis_contig92.16853.1|Name=mRNA_C-linearis_contig92.16853.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1356bp|location=Sequence derived from alignment at C-linearis_contig92:49487..50842- (Chordaria linearis ClinC8C monoicous)
ATGCCGTCAACTCTAAGCAAACTGTATGCTGCCGCAGCCCGTGGTTCCGT CGAGCGCACGGTTGCCCTGCTTTCCGGAGGGTCGGTGGACATCGACGGAG GCTACGGTGATGTGAGCCGGACCCCTCTCATGGCGGCCTCCACCATGGGA TACATGCGGGTCGTAAGGGTCCTCTTGAGAGTGGGAGCCAGAGTGTCGGT GGCGGACAATGACGGTGCGACTGCTCTACACCTGTCGATTGTCAACAAAC GCCTGGCCGTCAGCAAGGCTCTGATTAAGGCCGGTGCGGACGTTGAAGCC CGTGGTGTAGACGGTACGCCGCTTCACGTGGCCGCGGCGAAAGGATTCCA CAAAGGATTGGTGATGCTGATCCACGCGGGTGCGAATGTCGACAGTGAGC AAGAAAGCGGAGCGACACCCCTGTACATTTCTGTACATTTCGGCACGACA AGGGAGACTTGAAGATGTCAGGGTTCTCGTTGGGGCGAAGGCGAATCCGC TCTTGGCTGCATACGACGGCAAAATCCTCCCGCTCGATGCGGCGGCTGAA AACGTACACCTGGAAGTTGTCCGCGAACTCGTACAGCGGTTCGGAATCGA CGGTTGTTCTCGTGACGGTGGAGCACAAGCTCTCGCGGAGGCCGCTTCTC AGAATCAAGTAGATATCGTCAATTTTCTGTGTGACAACGGTGTGGTGGAC GCGGAGGGCATTGCACTGTGTGCTGCCGTGGAAGGTCGGCGTGAGGAGTG TGTGAAGTACGCGTGCATACGCCAACATGACCCACAACAGTACCTTGCCC ATGTACTCAAACCAAATTTTCCAAGACACCCCTCGTGTGAGCGCACTTGA GCTTGGGGGGCTTCTATTCTCCTAGAATCACGCGCTTGCTCGTTGACGCC GGCGCGGACGTGGCATCGCGCGTTCGGTATGAAGGAATCGAAGTAGATTG TCTAATGCACGATACGCCCTTGGCGATCGCCGAATCGATTCTACCTTTGT GGGAGACCGAATGGGAGACTTCGGAAGAAGTGGAGTTCGGGCTGAAGGGT GTCATACGCTTGCTGAAGCAGGTGGATGCAGTTCACTCGATCTCCTGATG TTGGCCGAGCGTGCTCGAGAAATCAATGCCGATCGTTCGCATGCTGCCGG GTCTGAAGCGCAGGGCGTCGAAGCCTCGTGTGCTCTTGGCGGCCCTGTCC AGGTGCGTGGTGTTGTTTTCGTTTGTCGGGTGCGATTGTAGGCAAGATTG TTAAAATACTGAGCTCAACCATATTCTCCACCCGCCTCTTATCAACAGGT ACAACAACAAGCAAGACGGACCGTTCCTGGGGTACTCTCCGGATAAGAAT GGGAAG
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Coding sequence (CDS) from alignment at C-linearis_contig92:49487..50842-

>mRNA_C-linearis_contig92.16853.1 ID=mRNA_C-linearis_contig92.16853.1|Name=mRNA_C-linearis_contig92.16853.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at C-linearis_contig92:49487..50842- (Chordaria linearis ClinC8C monoicous)
ATGCCGTCAACTCTAAGCAAACTGTATGCTGCCGCAGCCCGTGGTTCCGT
CGAGCGCACGGTTGCCCTGCTTTCCGGAGGGTCGGTGGACATCGACGGAG
GCTACGGTGATGTGAGCCGGACCCCTCTCATGGCGGCCTCCACCATGGGA
TACATGCGGGTCGTAAGGGTCCTCTTGAGAGTGGGAGCCAGAGTGTCGGT
GGCGGACAATGACGGTGCGACTGCTCTACACCTGTCGATTGTCAACAAAC
GCCTGGCCGTCAGCAAGGCTCTGATTAAGGCCGGTGCGGACGTTGAAGCC
CGTGGTGTAGACGGTACGCCGCTTCACGTGGCCGCGGCGAAAGGATTCCA
CAAAGGATTGGTGATGCTGATCCACGCGGATGCCGTCAACTCTAAGCAAA
CTGTATGCTGCCGCAGCCCGTGGTTCCGTCGAGCGCACGGTTGCCCTGCT
TTCCGGAGGGTCGGTGGACATCGACGGAGGCTACGGTGATGTGAGCCGGA
CCCCTCTCATGGCGGCCTCCACCATGGGATACATGCGGGTCGTAAGGGTC
CTCTTGAGAGTGGGAGCCAGAGTGTCGGTGGCGGACAATGACGGTGCGAC
TGCTCTACACCTGTCGATTGTCAACAAACGCCTGGCCGTCAGCAAGGCTC
TGATTAAGGCCGGTGCGGACGTTGAAGCCCGTGGTGTAGACGGTACGCCG
CTTCACGTGGCCGCGGCGAAAGGATTCCACAAAGGATTGGTGATGCTGAT
CCACGCGGCAGGTGGATGCAGTTCACTCGATCTCCTGATGTTGGCCGAGC
GTGCTCGAGAAATCAATGCCGATCGTTCGCATGCTGCCGGGTCTGAAGCG
CAGGGCGTCGAAGCCTCGTGTGCTCTTGGCGGCCCTGTCCAGCAGGTGGA
TGCAGTTCACTCGATCTCCTGATGTTGGCCGAGCGTGCTCGAGAAATCAA
TGCCGATCGTTCGCATGCTGCCGGGTCTGAAGCGCAGGGCGTCGAAGCCT
CGTGTGCTCTTGGCGGCCCTGTCCAGGTACAACAACAAGCAAGACGGACC
GTTCCTGGGGTACTCTCCGGATAAGTACAACAACAAGCAAGACGGACCGT
TCCTGGGGTACTCTCCGGATAA
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