mRNA_C-linearis_contig91.16845.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig91.16845.1 vs. uniprot
Match: D7FP08_ECTSI (C-CAP/cofactor C-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP08_ECTSI) HSP 1 Score: 533 bits (1374), Expect = 6.610e-172 Identity = 276/305 (90.49%), Postives = 283/305 (92.79%), Query Frame = 2
Query: 1604 GHAGGGVIVPALPSAPLLVNCASRTTVVHNADAAGPLRDLQVNCCQESYVYVLSAVRYATVMGCKDCTVVIGAAAGMVRVEECERMQLVTCCRRLTVTNSLECIFPIFVATPPVLSGDNRACQFAPYNSCYPRHKAHLHRAGLLGEGDDKVPANLWENPVEASMMGMPSMSVAGTPTS-ASRAKSRSPGGKGGTVGGMGHDLSPAIMPPEQFYTLAVPVPPDSPDDPPAENPFGLPPEYAAVLQEREAAVESLHQAIQDAGLTPRQNRELEECIRGRFTEWLVATGNLRQVLDLVGVAEKAVSRG 2515
GHA GGV VPALP APLLVNCASRTTVVHNADA+GPLRDLQVNCCQESYVYVLSAVR+ATVMGCKDCTVVIGAAAGMVRVEECERMQLVTCCRRLTVTNSLECIFP+FVATPPVL GDNRACQFAPYNSCYPRHKAHL RAGLLGE +D+VPANLW NPVEASMMGMPSM AGTPTS ASRAKSRSPGG G +GG+GHDLSPAIMPPEQFYTLAVPVPPDS DPPAENPFGLP EYAAVLQEREAAVE LHQAI DA LTPRQNRELEECIRGRFTEWLVATGNLRQVLDLV VAEKA S G
Sbjct: 82 GHACGGVTVPALPCAPLLVNCASRTTVVHNADASGPLRDLQVNCCQESYVYVLSAVRFATVMGCKDCTVVIGAAAGMVRVEECERMQLVTCCRRLTVTNSLECIFPVFVATPPVLCGDNRACQFAPYNSCYPRHKAHLQRAGLLGEEEDEVPANLWGNPVEASMMGMPSM-AAGTPTSSASRAKSRSPGGAKGGLGGLGHDLSPAIMPPEQFYTLAVPVPPDSAGDPPAENPFGLPSEYAAVLQEREAAVEGLHQAIVDADLTPRQNRELEECIRGRFTEWLVATGNLRQVLDLVSVAEKARSTG 385
BLAST of mRNA_C-linearis_contig91.16845.1 vs. uniprot
Match: D7FP07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP07_ECTSI) HSP 1 Score: 468 bits (1203), Expect = 1.340e-147 Identity = 270/366 (73.77%), Postives = 286/366 (78.14%), Query Frame = 1
Query: 331 RLWLRNEVFDGVLPLRATGVPLSPARGAVAGAGGGAAAAVPSPLFVLLKAVREVNPETVRYTTWITEGWRVLQWSEPSAKLFWEMLCMYQCHSPRLGTTDKVSGGLGKEGKVQAIELSVSQLGLFLFLHLHPDSTNHRLASQRAHQADSVWPSEEAAAALGGSPRRTG-------RVGHGR-AISPNSLAGAPSSPRGFGTGXXXXXXXXAGIHMFPSSSPLSPTRARSMRLHTRTSDDAHRLGFVKRHLHEMLRLASSHPAALLTTPSALASLASGSRTLQQQGNAVAEAGTAALMGETKPASGGAAEETGEE--------DEPDLSRDDFESLGFLLTGGLSLEGEIAPGVSLADLCPLWNEGG 1380
RLWLRNEVFDGVLPLRATGVPLSPAR G AA PSPLFVLLKAVREVNP+TVRYTTWITEGWRVLQWSEPSAKLFWEMLCMYQCHSPRLG+T+K+S G+GKE KVQ+++LSVSQLGLFLFLHLH DSTNHRLASQRAHQADSVWPSEEAAAALGGSPRR G RV HGR A SPNSLA APSSPRGFGT XXXXXXXXAGIHMFPS+SP+SPTRARSMRLHTRTSD+AHRLGFVKRHLHE+LRLASSHPAALL TP++LASLA DEPDLSRD+FESLGFLLTGG SLE E APGVSLADLCPLW + G
Sbjct: 6 RLWLRNEVFDGVLPLRATGVPLSPARNL-----GPGTAAGPSPLFVLLKAVREVNPDTVRYTTWITEGWRVLQWSEPSAKLFWEMLCMYQCHSPRLGSTEKMSSGVGKEDKVQSVQLSVSQLGLFLFLHLHTDSTNHRLASQRAHQADSVWPSEEAAAALGGSPRRAGGPAISPGRVAHGRGATSPNSLA-APSSPRGFGTXXXXXXXXXAGIHMFPSTSPVSPTRARSMRLHTRTSDEAHRLGFVKRHLHELLRLASSHPAALLATPASLASLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEPDLSRDEFESLGFLLTGGASLEAERAPGVSLADLCPLWGDQG 365
BLAST of mRNA_C-linearis_contig91.16845.1 vs. uniprot
Match: A0A6H5K6Y6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y6_9PHAE) HSP 1 Score: 344 bits (883), Expect = 5.460e-105 Identity = 190/226 (84.07%), Postives = 200/226 (88.50%), Query Frame = 1
Query: 331 RLWLRNEVFDGVLPLRATGVPLSPARGAVAGAGGGAAAAVPSPLFVLLKAVREVNPETVRYTTWITEGWRVLQWSEPSAKLFWEMLCMYQCHSPRLGTTDKVSGGLGKEGKVQAIELSVSQLGLFLFLHLHPDSTNHRLASQRAHQADSVWPSEEAAAALGGSPRRTG-------RVGHGR-AISPNSLAGAPSSPRGFGTGXXXXXXXXAGIHMFPSSSPLSPTR 984
RLWLRNEVFDGVLPLRATGVPLSPAR G AA PSPLFVLLKAVREVNP+TVRYTTWITEGWRVLQWSEPSAKLFWEMLCMYQCHSPRLG+T+KV+ G+GKE KVQ+++LSVSQLGLFLFLHLH DSTNHRLASQRAHQADSVWPSEEAAAALGGSPRR G RV HGR A SPNSLA APSSPRGFGTGXXXXXXXXAGIHMFPS+SP+SPTR
Sbjct: 6 RLWLRNEVFDGVLPLRATGVPLSPARNL-----GPGTAAGPSPLFVLLKAVREVNPDTVRYTTWITEGWRVLQWSEPSAKLFWEMLCMYQCHSPRLGSTEKVAVGVGKEDKVQSVQLSVSQLGLFLFLHLHTDSTNHRLASQRAHQADSVWPSEEAAAALGGSPRRAGGPAISPGRVAHGRGATSPNSLA-APSSPRGFGTGXXXXXXXXAGIHMFPSTSPVSPTR 225
BLAST of mRNA_C-linearis_contig91.16845.1 vs. uniprot
Match: A0A835Z1R1_9STRA (Tubulin binding cofactor C-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1R1_9STRA) HSP 1 Score: 218 bits (555), Expect = 9.140e-56 Identity = 138/328 (42.07%), Postives = 186/328 (56.71%), Query Frame = 2
Query: 1622 VIVPALPSAPLLVNCASRTTVVHNADA-AGPLRDLQVNCCQESYVYVLSAVRYATVMGCKDCTVVIGAAAGMVRVEECERMQLVTCCRRLTVTNSLECIFPIFVATPPVLSGDNRACQFAPYNSCYPRHKAHLHRAGLL-----------GEGDDKVPANLWENPVEASMMGMPSMSV--------AGTPTSASRAKSRSPGGKGGTVGGMGHDLSPAI----MPPEQFYTLAVPVPPDSPDDPP----------------AENPFGLPPEYAAVLQEREAAVESLHQAIQDAGLTPRQNRELEECIRGRFTEWLVATGNLRQVLDLV 2485
V PA PL+VN A+RTTV+H A A A R LQV+ C ESYVY+L+ +YATV+GC +CT+V+GAAAG+VR+E+C R+ L+ CRR N EC ++ + P+ GDNRACQ APYN+ YPR +AHL GLL N+W +P++ + P++ A TP +A++A G H L+ A MPP+ F+ +++P + A NPF LPPEYA L+EREA ++ L Q +Q A L+PRQ RELEE +RGRFTEWLV++G+LRQVLDLV
Sbjct: 334 VAAPARAGVPLVVNGAARTTVMHAAAAGARAERSLQVSHCHESYVYMLAPFQYATVLGCSECTIVVGAAAGVVRLEDCTRVTLIAACRRACAVNCCECALHLYAPSRPLFVGDNRACQVAPYNAAYPRLRAHLAACGLLPPLPXXXXXXXXXXXXXXXRNMWFSPLDLN--AAPTVXXXXXXXXXXALTPRTAAKA---------GADEAHPHALASASAVTQMPPDAFHCVSIPACAGGDEXXXXXXXXXXXXXXREATQALNPFPLPPEYANKLREREALLQQLQQVVQGAQLSPRQQRELEEAVRGRFTEWLVSSGHLRQVLDLV 650
BLAST of mRNA_C-linearis_contig91.16845.1 vs. uniprot
Match: A0A7S3XVC9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVC9_HETAK) HSP 1 Score: 157 bits (398), Expect = 5.840e-39 Identity = 86/172 (50.00%), Postives = 108/172 (62.79%), Query Frame = 2
Query: 1646 APLLVNCASRTTVVHNADA-----------AGPLRDLQVNCCQESYVYVLSAVRYATVMGCKDCTVVIGAAAGMVRVEECERMQLVTCCRRLTVTNSLECIFPIFVATPPVLSGDNRACQFAPYNSC-YPRHKAHLHRAGLLGEGDDKVPANLWENPVEASMMGMPSMSVAG 2125
APL+ N RTTV+H+ D + LR + VN C +SY+Y+L A + ATV+GC DCTVVIGA +GMV V ECER+QLVTCCRRL + N L+ +FP ATPPVL GD+RAC+ AP N YP AHL RAGL +G N W PV+ + G+ S + AG
Sbjct: 106 APLVYNFVIRTTVMHDEDKKQDELGGEDSNSRQLRAVHVNHCHDSYIYLLGAFKSATVLGCTDCTVVIGAISGMVNVVECERIQLVTCCRRLVINNCLDSVFPTLAATPPVLHGDHRACRLAPPNHAGYPALAAHLRRAGLP-DGTAPATVNFWNAPVDLNQAGLASAATAG 276
BLAST of mRNA_C-linearis_contig91.16845.1 vs. uniprot
Match: A0A4D9CT44_9STRA (C-CAP/cofactor C-like domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CT44_9STRA) HSP 1 Score: 165 bits (418), Expect = 1.220e-37 Identity = 106/283 (37.46%), Postives = 141/283 (49.82%), Query Frame = 2
Query: 1709 PLRDLQVNCCQESYVYVLSAVRYATVMGCKDCTVVIGAAAGMVRVEECERMQLVTCCRRLTVTNSLECIFPIFVATPPVLSGDNRACQFAPYNSCYPRHKAHLHRAGLLGEGDDKVPANLWENPVEASMMGMPSMSVAGTPTSASRAKSRSPGGKGGTVGGMGHDLS----------PAIMPPEQFYTLAVPVPPDSPDDPPAE--------------NPFGLPPEYAAVLQEREAAVESLHQAIQDAGLTPRQNRELEECIRGRFTEWLVATGNLRQVLDLV 2485
PLR + V C ++ VY+L + A AG+VRV CER+ LV RRL V N L+ FP+++ P VL GDNR C+ APYN+CYP L AG GE P N W++P++ + G + S GGKG G L+ I+PPEQFYTL++PVPP S P + NPF LPPEYA+VL+ER ++ L Q + L+ Q +E + +F EWL A+GNLRQVLDL+
Sbjct: 559 PLRRVHVQACHDANVYLLGPIESXXXXXXXXXXXXXXAVAGLVRVSNCERLTLVCAARRLVVCNCLDSTFPVYLLRPAVLVGDNRGCRLAPYNTCYPSLPLDLRTAGF-GELGSTQPRNQWDSPIDLTAGAH--NGAGGGEGGLGLTREGSHGGKGDRDNGRNAGLAGQEGARAGGESRILPPEQFYTLSIPVPPSSSPGLPGQGPMPPEGSPPTLLYNPFPLPPEYASVLRERSVGLDRLQQTV-IGSLSDEQRPGVEAALVSKFYEWLAASGNLRQVLDLI 837
BLAST of mRNA_C-linearis_contig91.16845.1 vs. uniprot
Match: A0A7S0NAY6_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0NAY6_9CHLO) HSP 1 Score: 149 bits (375), Expect = 4.770e-36 Identity = 97/279 (34.77%), Postives = 150/279 (53.76%), Query Frame = 2
Query: 1673 RTTVVHNADAAGPLRDLQVNCCQESYVYVLSAVRYATVMGCKDCTVVIGAAAGMVRVEECERMQLVTCCRRLTVTNSLECIFPIFVATPPVLSGDNRACQFAPYNSCYPRHKAHLHRAGLLGEGDDKVPANLWENPVEASMMGMPSMSVAGTPTSASRAKSR---SPGGKGGTVGGMGHDLSPAIMPPEQFYTLAVP---VPPDSPDD---PPAENPFGLPPEYAAVLQEREAAVESLHQAIQDAGLTPRQNRELEECIRGRFTEWLVATGNLRQVLDL 2482
+ T+V G ++V CQ++ VY+L+ +++ ++ GC DC +V+GA +G ++V+ CER+ LV+ RRL V++ + F I V PPV+ GD R Q APYN+ Y R AHL A + + N W+ PV + S T TS+S + S SP V A++PPE+F +P PP + D NPF +P +Y+A L+++ AVE + + +++AGL R+L+ I+ F EWLV +GN+RQV DL
Sbjct: 11 KATIVQREVEIGQGASVRVADCQDTVVYLLAPMQHVSICGCTDCIIVVGAVSGSLKVDLCERVHLVSASRRLRVSSCRDSTFCIAVNHPPVVMGDCRNLQLAPYNTYYERLDAHLRVANV------RTAPNRWDAPVSLT-------SKLHTDTSSSPSTSNPTSSPDSASRVV---------ALLPPEKFLPFMIPFRGAPPSAEDQLRPSTTANPFTMPQQYSAALEQKVQAVEDMRKNVKEAGLDGANKRDLQTVIQAYFKEWLVVSGNMRQVYDL 267
BLAST of mRNA_C-linearis_contig91.16845.1 vs. uniprot
Match: A0A7S3BWF8_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BWF8_9VIRI) HSP 1 Score: 148 bits (374), Expect = 1.720e-34 Identity = 103/282 (36.52%), Postives = 136/282 (48.23%), Query Frame = 2
Query: 1673 RTTVVHNADAAGPLRDLQVNCCQESYVYVLSAVRYATVMGCKDCTVVIGAAAGMVRVEECERMQLVTCCRRLTVTNSLECIFPIFVATPPVLSGDNRACQFAPYNSCYPRHKAHLHRAGLLGEGDDKVPANLWENPVEASMMGMPSMSVAGTPTSASRAKSRSPGGKGGTVGGMGHDLSPAI---MPPEQFYTLAVPVPPDSPDDPPAE---------NPFGLPPEYAAVLQEREAAVESLHQAIQDAGLTPRQNRELEECIRGRFTEWLVATGNLRQVLDL 2482
R T V + P D V C E VY L+ +R A V C+D VV+GA + R+E CER QL+ CCRRL V+N +C + TPPV GDNR AP+N+ YP +AHL G+ D V N W+ G RA+ VG G + A MPP +F VPV + P A NPF LPPEYAA L+ + +V L A++DA L+ + REL+ I+ F +WL+ +GN+RQV DL
Sbjct: 151 RGTAVRSEGDIAPPGDFGVAECVEGVVYALAPIRRAMVSNCRDSVVVLGAVGSLARLERCERTQLLVCCRRLVVSNCHDCTLYLATNTPPVFVGDNRNVVVAPFNTYYPSLRAHLEAVGV----DPSV--NRWDTVALLEEEG-----------ELVRAE----------VGHAGPGAAQAAVHAMPPNKFVPFIVPVVENGPGGAAANADASTQTHTNPFVLPPEYAAALEAKVRSVAQLRGAVKDAALSDARRRELQGVIQAHFKDWLLHSGNMRQVFDL 405
BLAST of mRNA_C-linearis_contig91.16845.1 vs. uniprot
Match: A0A8K1Y6G7_9CHLO (Probable TBCC domain-containing protein 1 at C-terminar half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8K1Y6G7_9CHLO) HSP 1 Score: 146 bits (368), Expect = 3.880e-32 Identity = 106/302 (35.10%), Postives = 152/302 (50.33%), Query Frame = 2
Query: 1673 RTTVVHNADAAGPLRDLQVNCCQESYVYVLSAVRYATVMGCKDCTVVIGAAAGMVRVEECERMQLVTCCRRLTVTNSLECIFPIFVATPPVLSGDNRACQFAPYNSCYPRHKAHLHRAGLLGEGDDKVPANLWENPVEASMMGMPSMSVAGTPTSASRAKSRSP-----------------GGKG----GTVGGMGHDLSPAIMPPEQFYTLAVPVPPDSPDDPPAENPFGLPPEYAAVLQEREAAVESLHQAIQDAGLTPRQNRELEECIRGRFTEWLVATGNLRQVLDLVGVAEKAVSRG 2515
++TVV D P L+V C ++ VY L+ + YA + GC DCTV+IGA +++VE CER+QLV RL++ + +C+F + V PP+L GDNR Q APYN+ Y R H+ +AG+ E NLW+ PV P+ + T TSA+ K+R P GG G G G G +S + F LA S P A +PF LP Y + + +AV L A++ A L + REL+ I+ F +WL+ +GN+RQV DL + + S G
Sbjct: 366 KSTVVRGEDNF-PAGILRVTDCHDTVVYALAPLNYAKIAGCSDCTVMIGAVGRVLKVERCERVQLVASAVRLSIASCHDCVFYLGVNRPPLLLGDNRFLQMAPYNTQYERLPVHMAKAGVTAE------PNLWDRPVSLGREHRPATPDSDTATSAA-GKARMPFTLLPPDKLLPLMVPFKGGPGPLCGGAASGGGSRMSADVG---SFVGLAESGGGGS--GPLAPSPFRLPAVYEEAKERKVSAVSDLRNAVKAAALDDAKKRELQAVIQSYFKDWLMTSGNMRQVYDLARMEREEASTG 654
BLAST of mRNA_C-linearis_contig91.16845.1 vs. uniprot
Match: A0A7S0SNU2_9CHLO (TBCC domain-containing protein 1 n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SNU2_9CHLO) HSP 1 Score: 137 bits (346), Expect = 1.610e-31 Identity = 92/277 (33.21%), Postives = 141/277 (50.90%), Query Frame = 2
Query: 1652 LLVNCASRTTVVHNADAAGPLRDLQVNCCQESYVYVLSAVRYATVMGCKDCTVVIGAAAGMVRVEECERMQLVTCCRRLTVTNSLECIFPIFVATPPVLSGDNRACQFAPYNSCYPRHKAHLHRAGLLGEGDDKVPANLWENPVEASMMGMPSMSVAGTPTSASRAKSRSPGGKGGTVGGMGHDLSPAIMPPEQFYTLAVPVPPDSPDDPPAENPFGLPPEYAAVLQEREAAVESLHQAIQDAGLTPRQNRELEECIRGRFTEWLVATGNLRQVLDL 2482
+L+ + T V P ++V+ C ++ +Y+L+ V+YA+++GC DC VV+GA +RVE+CER+ + +RL V + E F + + PP+ GDNR + APYN+ Y + + HL AGL + W+ PV ++G P AG A P K SP I+P + A P+P SP NPF +PP Y L + +V SL A++DAGL R+L+ I+ F EWL+ +G++RQ+ DL
Sbjct: 84 VLIENVHKGTAVRRDGDVPPGASVRVSGCHDAVIYLLAPVQYASIIGCSDCVVVVGAVTRALRVEQCERLTCIAATKRLQVRSCHEGTFYLGITRPPIFIGDNRRNRVAPYNTFYEQLERHLQVAGLSPQ------CAAWDQPV---VIGAP----AGAXXXXXSAVEVLPAEK----------FSPFIVP----FRGATPLPGTSPVT--QANPFAVPPAYVHALDHKVRSVASLRAALRDAGLDEGSKRDLQATIQAYFKEWLLTSGSMRQIYDL 331 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig91.16845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig91.16845.1 >prot_C-linearis_contig91.16845.1 ID=prot_C-linearis_contig91.16845.1|Name=mRNA_C-linearis_contig91.16845.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=636bp MSASSSSSSPPPRLWLRNEVFDGVLPLRATGVPLSPARGAVAGAGGGAAAback to top mRNA from alignment at C-linearis_contig91:652831..672289- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig91.16845.1 ID=mRNA_C-linearis_contig91.16845.1|Name=mRNA_C-linearis_contig91.16845.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=19459bp|location=Sequence derived from alignment at C-linearis_contig91:652831..672289- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig91:652831..672289- >mRNA_C-linearis_contig91.16845.1 ID=mRNA_C-linearis_contig91.16845.1|Name=mRNA_C-linearis_contig91.16845.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3816bp|location=Sequence derived from alignment at C-linearis_contig91:652831..672289- (Chordaria linearis ClinC8C monoicous)back to top |