mRNA_C-linearis_contig91.16844.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig91.16844.1
Unique NamemRNA_C-linearis_contig91.16844.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig91.16844.1 vs. uniprot
Match: D7FP16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP16_ECTSI)

HSP 1 Score: 304 bits (779), Expect = 8.160e-91
Identity = 185/243 (76.13%), Postives = 195/243 (80.25%), Query Frame = 1 
Query:   10 GRGLFLSSRDSRRSDHGTYSPGGSTKRGSPKHSRXXXXXXXXXXXQSPLLERSGEKAGEXXXXXXXXXXGA-------------FAEGGMVAGPISLLGYLRVEVFGAEDHGVVDTQANRTVRNFLTVPRQLERLLLFGMLVCLDTFLYVTTFLPIRIVIGLVTTIFSIITRRTRPTVNRPLVYDWMRGATIAAALCCLQFLEMSRVYHYIRGQAMVKLYVLIAMVEIFDKLMCSFGQDALDS 699
            GR LF S R +RRSDH TYSP GSTKRGSP+H        XXXXX              XXXXXXXXXX               FAEGG+ AGPISLLGYLRVEVFGAEDHGVVDTQANRTVRNFLTVPRQLERLLLFGMLVCLDTFLYVTTFLPIRIVIG+V+++FS++TRR RP+VNRPLVYDWMRGAT AAAL  LQFLEMSRVYHYIRGQAMVKLYVLIAMVEIFDKLMCSFGQDALDS
Sbjct:  555 GRSLFSSDRHTRRSDHETYSPDGSTKRGSPRHRSSPRSPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAEGGVAAGPISLLGYLRVEVFGAEDHGVVDTQANRTVRNFLTVPRQLERLLLFGMLVCLDTFLYVTTFLPIRIVIGVVSSLFSLLTRRRRPSVNRPLVYDWMRGATFAAALGSLQFLEMSRVYHYIRGQAMVKLYVLIAMVEIFDKLMCSFGQDALDS 797
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BLAST of mRNA_C-linearis_contig91.16844.1 vs. uniprot
Match: A0A835YQB0_9STRA (Eukaryotic membrane protein family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQB0_9STRA)

HSP 1 Score: 218 bits (556), Expect = 1.890e-64
Identity = 115/154 (74.68%), Postives = 126/154 (81.82%), Query Frame = 3 
Query:  699 LYLSTVHKKKRRVLLHFAIVCVTACLHSLLLFVHVTTLTVAVNSSDQALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFLTMIMLLNVCQGAGR---PGFSTIFFMVFGGEVLADWIKHGFIIKFNQLTPSIYDEYSTILAR 1151
            LY ST+  KKR  LL+F IVC+ + LHSLLLFVH+TTLTVAVNSSDQALLTLLISNNFAEIKS+VFKKFDK NLFQLSCHD+VERFKL LFL MIMLLN+  G        F  IFF+VFGGEVLADWIKH FI KFN L PS+Y+EYS ILAR
Sbjct:   67 LYWSTMRSKKRLTLLNFVIVCIQSTLHSLLLFVHITTLTVAVNSSDQALLTLLISNNFAEIKSAVFKKFDKQNLFQLSCHDIVERFKLILFLGMIMLLNIAHGGDDHLLAQFLNIFFLVFGGEVLADWIKHAFITKFNMLQPSLYEEYSMILAR 220
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BLAST of mRNA_C-linearis_contig91.16844.1 vs. uniprot
Match: A0A6H5KZ60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ60_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 1.310e-56
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 3 
Query:  699 LYLSTVHKKKRRVLLHFAIVCVTACLHSLLLFVHVTTLTVAVNSSDQALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFLTMIMLLNVCQG 1007
            LYLSTVHKKKRRVL+HF IVCVTACLHSLLLFVHVTTLTVAVNSSDQALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFL MIMLLNVCQG
Sbjct:   91 LYLSTVHKKKRRVLVHFTIVCVTACLHSLLLFVHVTTLTVAVNSSDQALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFLAMIMLLNVCQG 193
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BLAST of mRNA_C-linearis_contig91.16844.1 vs. uniprot
Match: A0A6H5KXP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXP0_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 8.140e-49
Identity = 118/172 (68.60%), Postives = 129/172 (75.00%), Query Frame = 1 
Query:   19 LFLSSRDSRRSDHGTYSPGGSTKRGSPKHSRXXXXXXXXXXXQSPLLERSGEKA--------------GEXXXXXXXXXXGA--FAEGGMVAGPISLLGYLRVEVFGAEDHGVVDTQANRTVRNFLTVPRQLERLLLFGMLVCLDTFLYVTTFLPIRIVIGLVTTIFSIITR 486
            LF S+RD+RRSD  TYSP GSTKRGSPKH     XXXXXXXX   LLE  G++               GE          GA  FA G +VAGPISLLGYLRVEVFGAEDHGVVDTQANRTVRNFLTVPRQLERLLLFGMLVCLDTFLYVTTFLPIRIVIG+V+++FS++TR
Sbjct:  512 LFPSNRDTRRSDRETYSPDGSTKRGSPKHRSSPRXXXXXXXXXXXLLESRGDRGEQVAGAAGSEAVAGGEVGGDIAANGGGACAFAGGKVVAGPISLLGYLRVEVFGAEDHGVVDTQANRTVRNFLTVPRQLERLLLFGMLVCLDTFLYVTTFLPIRIVIGVVSSLFSLLTR 683
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BLAST of mRNA_C-linearis_contig91.16844.1 vs. uniprot
Match: A0A7S3XZM9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZM9_HETAK)

HSP 1 Score: 158 bits (400), Expect = 1.850e-41
Identity = 84/153 (54.90%), Postives = 109/153 (71.24%), Query Frame = 3 
Query:  699 LYLSTVHKKKRRVLLHFAIVCVTACLHSLLLFVHVTTLTVAVNSSDQALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFLTMIMLLNVCQGAGRPGF---STIFFMVFGGEVLADWIKHGFIIKFNQLTPSIYDEYSTILA 1148
            LY ST  +K R + L+F  V     +HS+LLFVH+ TL VAVNSS+++L+ LLISNNF E+K SV KKFD+ NLFQL+C D+VERFKL LFL +I+LLN CQG     +   + +   V GGEVLADW+KH FI KFN +  S+Y EY+ +L+
Sbjct:   73 LYRST-RRKDRAIALNFLAVIAYVVIHSVLLFVHIATLNVAVNSSEKSLMALLISNNFNEMKGSVLKKFDRKNLFQLACADIVERFKLMLFLFLIVLLNYCQGMQDAVYRVVTKVALWVLGGEVLADWVKHAFIAKFNSIPSSVYPEYAAMLS 224
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BLAST of mRNA_C-linearis_contig91.16844.1 vs. uniprot
Match: A0A7R9U9R0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9R0_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.660e-39
Identity = 78/126 (61.90%), Postives = 98/126 (77.78%), Query Frame = 3 
Query:  774 LHSLLLFVHVTTLTVAVNSSDQALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFLTMIMLLNVCQGAGRPG-FSTIFFMVFGGEVLADWIKHGFIIKFNQLTPSIYDEYSTILA 1148
            LHS LLF+H+ TL VA+NS D ALLT+LIS+NFAEIKS VFKKFDK N+FQL CHDVVERFKL LF+++I LL+ C G+ + G F  +  +VF  E+LADW+KHGFI KFN +  S + EY+ +LA
Sbjct:   12 LHSCLLFIHMATLNVAINSVDAALLTVLISSNFAEIKSFVFKKFDKKNVFQLGCHDVVERFKLWLFMSLIGLLSWCNGSLQLGSFLQLTCVVFSAEMLADWVKHGFIAKFNCIDASAFGEYAVVLA 137
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BLAST of mRNA_C-linearis_contig91.16844.1 vs. uniprot
Match: A0A7S1U4H5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4H5_9STRA)

HSP 1 Score: 155 bits (391), Expect = 2.140e-38
Identity = 80/140 (57.14%), Postives = 102/140 (72.86%), Query Frame = 3 
Query:  732 RVLLHFAIVCVTACLHSLLLFVHVTTLTVAVNSSDQALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFLTMIMLLNVCQGAGRPG-FSTIFFMVFGGEVLADWIKHGFIIKFNQLTPSIYDEYSTILA 1148
            R+L  F + C++  LHS L FVHV TL VA+NS D ALLTLLIS+NFAEIKS VFKKFDK N+FQL CHD+VERFKL LF+T+I +L+ C G  +   F  +  +VF  E+LADW+KH FI KFN +  S + EY+ ++A
Sbjct:  329 RMLKSFLVACISTVLHSSLYFVHVATLNVAINSVDAALLTLLISSNFAEIKSFVFKKFDKKNVFQLGCHDIVERFKLWLFMTLIAILSWCNGTLQVTLFLRLICVVFSCEMLADWVKHAFIAKFNHIDASAFGEYAVVIA 468
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BLAST of mRNA_C-linearis_contig91.16844.1 vs. uniprot
Match: A0A7S1DB00_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DB00_CYCTE)

HSP 1 Score: 147 bits (370), Expect = 1.770e-37
Identity = 79/154 (51.30%), Postives = 108/154 (70.13%), Query Frame = 3 
Query:  699 LYLSTVHK-KKRRVLLHFAIVCVTACLHSLLLFVHVTTLTVAVNSSDQALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFLTMIMLLNVCQGAGRPGFSTIFFM---VFGGEVLADWIKHGFIIKFNQLTPSIYDEYSTILA 1148
            +Y +T  + K  R+L+ F +V     +H+LLLFVHV TL VA+NS+D ALLTLLIS NFAEIKS+VFKK+++ NLF+++  D+ ERFKLALFL ++++LN+CQG           M   V+  E+LADWIKH FI KFN +   +Y EY+ +LA
Sbjct:   60 MYWNTTRRPKSTRMLVSFIVVLCYCTVHTLLLFVHVATLNVAMNSADHALLTLLISGNFAEIKSTVFKKYNRPNLFKITASDICERFKLALFLMLVLVLNICQGMDWKTTYQYLSMCGYVWVAEILADWIKHSFITKFNFIQSKVYPEYALLLA 213
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BLAST of mRNA_C-linearis_contig91.16844.1 vs. uniprot
Match: H3HCB3_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=H3HCB3_PHYRM)

HSP 1 Score: 147 bits (372), Expect = 2.490e-37
Identity = 83/153 (54.25%), Postives = 109/153 (71.24%), Query Frame = 3 
Query:  699 LYLSTVHKKKR--RVLLHFAIVCVTACLHSLLLFVHVTTLTVAVNSSDQALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFLTMIMLLNVCQGAGRPGFSTIFFMVFGGEVLADWIKHGFIIKFNQLTPSIYDEYSTILAR 1151
            LY +  ++ +R  R+ L FA+  +   LHSLLLF  V TL VAVNSS+ +LLTLLISNNFAE+KSSVFKKF++ NLFQ+SC D+VERFKL   LT+I L+ +   AG   + T   MV+  E+L DW+KH FI KFNQ+ P++Y ++ TIL R
Sbjct:  108 LYYTAKYQPRRVTRMFLDFAVAIIYVVLHSLLLFTQVVTLNVAVNSSNTSLLTLLISNNFAELKSSVFKKFEEQNLFQISCSDIVERFKL---LTIISLILLQSSAGDVAWGTS--MVWVAEMLIDWLKHAFITKFNQIPPTMYSKFITILCR 255
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BLAST of mRNA_C-linearis_contig91.16844.1 vs. uniprot
Match: A0A7S2YHH4_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YHH4_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.550e-37
Identity = 79/154 (51.30%), Postives = 111/154 (72.08%), Query Frame = 3 
Query:  699 LYLSTVHK-KKRRVLLHFAIVCVTACLHSLLLFVHVTTLTVAVNSSDQALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFLTMIMLLNVCQGAGRP---GFSTIFFMVFGGEVLADWIKHGFIIKFNQLTPSIYDEYSTILA 1148
            +Y + V++ K  R+L+  A+V +    H+LLLF+HV TL VA+NS+D ALLTL IS NFAE+KS+VFKK++K  LF+++  DV ERFKLALFL +++LLN+CQG  +    G+  I  +V+  E+LADWIKH FI KFN L   +Y+EY  ++A
Sbjct:  118 MYWNAVNRPKSSRMLISVAVVLMYTTCHTLLLFLHVATLNVAMNSADHALLTLFISGNFAEVKSTVFKKYNKAALFKMTASDVCERFKLALFLGLVLLLNMCQGMNQTQLIGYLRICAIVWCAELLADWIKHSFITKFNILQAKVYNEYELLMA 271
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig91.16844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP16_ECTSI8.160e-9176.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YQB0_9STRA1.890e-6474.68Eukaryotic membrane protein family-domain-containi... [more]
A0A6H5KZ60_9PHAE1.310e-5697.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXP0_9PHAE8.140e-4968.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XZM9_HETAK1.850e-4154.90Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9U9R0_9STRA2.660e-3961.90Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1U4H5_9STRA2.140e-3857.14Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1DB00_CYCTE1.770e-3751.30Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
H3HCB3_PHYRM2.490e-3754.25Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A7S2YHH4_9STRA2.550e-3751.30Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig91contigC-linearis_contig91:643358..648448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score276.9
Seed ortholog evalue5.7e-72
Seed eggNOG ortholog2880.D7FP16
Preferred nameTAPT1
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001501,GO:0001503,GO:0001701,GO:0003006,GO:0003674,GO:0004888,GO:0004930,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005788,GO:0005789,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006457,GO:0006935,GO:0007154,GO:0007165,GO:0007186,GO:0007275,GO:0008104,GO:0008150,GO:0009605,GO:0009790,GO:0009791,GO:0009792,GO:0009793,GO:0009856,GO:0009888,GO:0009987,GO:0010154,GO:0010183,GO:0010638,GO:0012505,GO:0014031,GO:0014032,GO:0014033,GO:0015630,GO:0016020,GO:0016021,GO:0016520,GO:0022414,GO:0023052,GO:0030154,GO:0030176,GO:0031224,GO:0031227,GO:0031344,GO:0031346,GO:0031974,GO:0031984,GO:0032501,GO:0032502,GO:0032507,GO:0033036,GO:0033043,GO:0033365,GO:0034613,GO:0034975,GO:0035437,GO:0036064,GO:0038023,GO:0040011,GO:0042175,GO:0042221,GO:0042330,GO:0042995,GO:0043009,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044432,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044706,GO:0045185,GO:0045724,GO:0048316,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048608,GO:0048706,GO:0048731,GO:0048762,GO:0048856,GO:0048863,GO:0048864,GO:0048868,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050918,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051235,GO:0051239,GO:0051240,GO:0051641,GO:0051651,GO:0051704,GO:0051716,GO:0060089,GO:0060485,GO:0060491,GO:0061035,GO:0061036,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070972,GO:0071944,GO:0072595,GO:0098827,GO:0120025,GO:0120032,GO:0120034,GO:0120035,GO:0120038,GO:1902017,GO:1902115,GO:1902117,GO:1903010,GO:1903012,GO:1904888,GO:2000026
EggNOG free text desc.positive regulation of bone development
EggNOG OGsKOG2490@1,KOG2490@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size1151
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig91.16844.1prot_C-linearis_contig91.16844.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig91 645178..647347 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930788.4605842-UTR-C-linearis_contig91:643357..6434861622930788.4605842-UTR-C-linearis_contig91:643357..643486Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 643358..643486 -
1690881250.7001715-UTR-C-linearis_contig91:643357..6434861690881250.7001715-UTR-C-linearis_contig91:643357..643486Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 643358..643486 -
1622930788.477618-UTR-C-linearis_contig91:644037..6442201622930788.477618-UTR-C-linearis_contig91:644037..644220Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 644038..644220 -
1690881250.7136393-UTR-C-linearis_contig91:644037..6442201690881250.7136393-UTR-C-linearis_contig91:644037..644220Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 644038..644220 -
1622930788.4916153-UTR-C-linearis_contig91:645046..6451771622930788.4916153-UTR-C-linearis_contig91:645046..645177Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 645047..645177 -
1690881250.7262902-UTR-C-linearis_contig91:645046..6451771690881250.7262902-UTR-C-linearis_contig91:645046..645177Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 645047..645177 -
1622930788.6480534-UTR-C-linearis_contig91:647347..6474071622930788.6480534-UTR-C-linearis_contig91:647347..647407Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 647348..647407 -
1690881250.7810585-UTR-C-linearis_contig91:647347..6474071690881250.7810585-UTR-C-linearis_contig91:647347..647407Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 647348..647407 -
1622930788.6629965-UTR-C-linearis_contig91:647760..6478901622930788.6629965-UTR-C-linearis_contig91:647760..647890Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 647761..647890 -
1690881250.7900815-UTR-C-linearis_contig91:647760..6478901690881250.7900815-UTR-C-linearis_contig91:647760..647890Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 647761..647890 -
1622930788.6894553-UTR-C-linearis_contig91:648401..6484481622930788.6894553-UTR-C-linearis_contig91:648401..648448Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 648402..648448 -
1690881250.8034775-UTR-C-linearis_contig91:648401..6484481690881250.8034775-UTR-C-linearis_contig91:648401..648448Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 648402..648448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930788.522279-CDS-C-linearis_contig91:645177..6452221622930788.522279-CDS-C-linearis_contig91:645177..645222Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 645178..645222 -
1690881250.7395802-CDS-C-linearis_contig91:645177..6452221690881250.7395802-CDS-C-linearis_contig91:645177..645222Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 645178..645222 -
1622930788.5539136-CDS-C-linearis_contig91:645898..6460761622930788.5539136-CDS-C-linearis_contig91:645898..646076Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 645899..646076 -
1690881250.7522032-CDS-C-linearis_contig91:645898..6460761690881250.7522032-CDS-C-linearis_contig91:645898..646076Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 645899..646076 -
1622930788.6074326-CDS-C-linearis_contig91:646807..6469711622930788.6074326-CDS-C-linearis_contig91:646807..646971Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 646808..646971 -
1690881250.7618089-CDS-C-linearis_contig91:646807..6469711690881250.7618089-CDS-C-linearis_contig91:646807..646971Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 646808..646971 -
1622930788.6269076-CDS-C-linearis_contig91:647263..6473471622930788.6269076-CDS-C-linearis_contig91:647263..647347Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 647264..647347 -
1690881250.771145-CDS-C-linearis_contig91:647263..6473471690881250.771145-CDS-C-linearis_contig91:647263..647347Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 647264..647347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig91.16844.1

>prot_C-linearis_contig91.16844.1 ID=prot_C-linearis_contig91.16844.1|Name=mRNA_C-linearis_contig91.16844.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=157bp
MVAGPISLLGYLRVEVFGAEDHGVVDTQANRTVRNFLTVPRQLERLLLFG
MLVCLDTFLYVTTFLPIRIVIGLVTTIFSIITRRTRPTVNRPLVYDWMRG
ATIAAALCCLQFLEMSRVYHYIRGQAMVKLYVLIAMVEIFDKLMCSFGQD
ALDSCT*
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mRNA from alignment at C-linearis_contig91:643358..648448-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig91.16844.1 ID=mRNA_C-linearis_contig91.16844.1|Name=mRNA_C-linearis_contig91.16844.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5091bp|location=Sequence derived from alignment at C-linearis_contig91:643358..648448- (Chordaria linearis ClinC8C monoicous)
GGCGGCGGCGGCAGGGGGCTGTTTTTGAGCAGCCGGGATTCTAGAAGGTG
TATTTTTTGTGCCAGGTTCTCGAAGGCGGACGTTTCAAGTTTTTCGTTGT
TTGGTTCTACATGGGATTCCGACGCTTGGTAGACGAAGAGCAATGCCTCG
CATTTGCCGCCCCTAGGTTGTCGCAGGGGGGGTCTGTGTTTCACTAGCTG
GGTTTTTGCCCAGCGTGTGCATGCCAGGGAGGTTGTTTTCGTCGTTCTGT
TTTTGGACCGGTCGCAGGAGGTCCACTTTCGCGTGGACGGCTCGGGTCTG
CCGTGTCTGTTGCTCTTTATCTTGACACGACATACTGTCTACAGTATGTC
GATAAAAAGAGCCCGTGTACTGCTGTAGGTGCCACGAATCTTTTGTTTTT
TTCCTGTCACCGGATTGCGTCGAATGTTGCTTCACCCTTGTTTTCGGGGC
CCTGGTTTGTTGTATTTTGCTGTTGATACAATCTAAACACGCGAGAATTA
ATTTCCCGGCACCACATCAACGTAAAAATTGTCGGCCGTTTTGCATGCGT
TTTTCCAGGTCAGACCACGGGACGTACAGCCCAGGGGGCTCGACAAAACG
CGGCAGCCCCAAGCATTCAAGGAGTCCACGGAGCCCCCGAAGTCCCCGAA
GGAGTCAGAGCCCGTTACTAGAACGGAGTGGGGAGAAGGTGAGTCGCAGG
TCGTAGGTCTTAGCGTGCATTGTGTCGTTGTGTGCGCGTGTTGCTTACAT
GGTCGTTTTCTCTTGGTGATGATCTTACGTTTTATGTATGTATGCGGGTA
GACCAAGTATCGAGACAAACAAACTTGCCAACGCATAAAGTCTGCAGGGC
TTTCACAGAGTTTGGGTTACCCGTCTGGGCAGTTTTGATGACCCTGGCCT
CTTTTGTTTTTGTGCCACCTCCTCCTCCTCCTCCTCCTTCTATCGCTTTC
TGCCCCCCCCTTTCTTTGCTTGTCATGCCCTTGCAAGCGATGACCAAACC
GCCCTCCTTCCCCTTCCTCACTTTGGTGCTCTTCGGAACAGGCGGGCGAA
GAGGATGGGGGGGATGACGGCGGTGGGGGTGGCGCTTTTGCCGAGGGAGG
CATGGTGGCGGGACCTATCTCGCTGTTGGGGTACCTCAGGGTGGAGGTGT
TTGGGGCGGAGGATCATGGGGTGGTGGACACGCAGGTAGGTTCTATAATA
GTGTTTGTTGTCGTCGCCCTGGCACTTACGTTGTTGTTTGGGATACGATG
GCGTAGGTGGTGGTGGTAGTGGTGTTATCGTCGTCGTCGTCGTAGGTAGT
TTCTGGTGCTTGATTGTTGTGGTCAAGGTGTTTTTGGTTGCTGTTGCTCC
TGTGATGGCGTAGATGGTGGTGGTGGCGGTGGTGATGGTCATGGTACGTC
TAGTTGGCCAGCTCATTCACACTGTTGTGTGTGTGTTTTGAGTTTTCTAC
TGCTGCTGTTTCGTGCTACACAACCAGGCCAACCGCACGGTCAGAAACTT
TTTGACGGTGCCGAGGCAGCTAGAGAGGCTGCTGCTGTTCGGAATGCTGG
TGTGCCTCGACACCTTCCTGTACGTCACCACCTTCCTGCCGATCAGGATT
GTCATCGGGCTCGTGACGACTATCTTCTCTATCATCACCAGGTCGGTGCT
TTCTCCTAGGATTGGTGGTAGTAGTAGTGGTGGTGGTGAAGTTGTTTCTC
AATATTTTTCGAGACGTTTGAGACGTTTGTTTTTGCGTCTTGATTTCGGG
TCGTAGCACAGTCCCTCCTCCGTCGCTTACGGCGAGGGTCGCGAGATTCT
CAAGGTTTTGTGTTTGTTTTTCGACTACTGCTGTGGTGTGCCTAAACCCA
TCTCTTATGATACTCTCTCGCTCACGCTTGACCGGACGCTCCCGTACATG
GCCGATGCGCAGCGAAAATCAAAAATAGGATGTGGAAGACAGGCGTGCCT
TATGAGAACCAGAGCTGCACATACCAGAATACAGGAAGATTGGATCTTAA
TTGGGGTGTCTTGTCGACAAGAAACTCGCCGAAGATTCAACTCTTCCAAC
GCAACTTGCGGAGCCGAAATGCGGAGAGTCTTTGGGCTCTCCTCCCTCGG
CCCGCACTTTACTCTTGTGTGAACCTCTCTCCTTGCTTAAATTAAAAACT
TCGTACTTTATCACGAAAGGAAACTAGCCGCCCCCGGTAGTGGGTGAATA
CTACCGCGACAGGGCCATCATGTTCTGAGGGTAGCCTGTGTCTTCATTGG
CGTCGACGAAGAGGTATACGATGGTGTAAGAATGCGTCGGTCTCACAAAC
ACTGGAGGACATTTTCTCGATCACCCCAGTGCCCTTCCCTCTTTTGCGTC
ATGCTTTGACGGACGGAAGCAGGCGAACCAGGCCGACGGTGAACCGCCCG
CTGGTGTACGACTGGATGCGCGGGGCAACCATCGCGGCCGCTCTGTGCTG
CCTGCAGTTCCTCGAGATGTCGCGGGTGTACCACTACATCAGGGGGCAGG
CGATGGTAAAGCTGTACGTGCTAATCGCCATGGTGGAGATCTTCGATAAG
GTAAGTCTCGGTGGTGCTGTTTTATGTGGAAATCCACCACCCTTTGCCTC
TGGTGGAGATCCCGGACGAGGCGAGGTTTGGTGTTGCTGGGTGAGGGATC
TACCGCCTCAGCCTGGAGCGTGTGTCGTGCCTTGTAGCTAGTGCCTCGAC
TTTCGACTGACGCGTCAAGCCCAAGAAAACTGTATCGGGGGTGTAAACCT
TAACTGTCCAGGTTAGACAGGAGTAGATAGACAACACACATACACATGTT
GCCATCATTCGTCGTCATCGTTCCGACTTCCTGCGGTCCCGCGCGCTGCG
CGTTTTGCGGACAAGAGTTGTGAATTATTTCGAGGCGGTCGGTTCGATGA
CGGCAAGCGTAAATACGCCTTTGGGTGTTTTCCTTTCTTTGTTGCCACAA
GAAGTTCCTGAGCAGCCCAGAGTATAGAAGCGATGGCTCGATGGAGCAAT
CAATCGATCTACATTACCCGAACGTGCAGCTGTAGCTGGCGTCGGGGTTT
GTGGTAGAGACAACCCCCAAAGAGGGCGGATAGATCCATTTCCGGCACCT
GCGGCAACGTGAAGCCTTCCAGCGAACCTTGATGGGTTTTCGTGCTTCAC
AGCTCGTCTAGGTTTCAGCCTTCCACGCTGACCGTCATCGCACGAACGAC
GGGTCGATGCCATCTCCCTGATGCAGCTGATGTGTTCCTTCGGCCAAGAC
GCGCTGGACTCCTGTACCTGAGCACGGTGCACAAGAAGAAGCGGCGGGTG
TTGTTGCACTTCGCGATCGTGTGCGTCACGGCTTGCCTGCACAGCCTCCT
GCTCTTCGTGCACGTCACGACGCTAACCGTGGCGGTCAACTCCTCGGACC
AGGTAGTTGGAGGGGTTGGTAGTTTTTTTTGGAGTTTTTTTTGGCGCATT
CAATCCCAGGTCCCGTAGATTTTACGAATGGTTTGCTGGGGCGGCGAGTT
TTGGTGGGTATTTCTGAGTTTTTCGGTGTATTTTTGTTTCTCAGCGGTTC
TGGGCGTGCTGTATGTGTGTGTGTTTTCGTCCCATTTATTTTGGCGACGG
TCCCTTTCCAATCAAGGCGAGACGTGTACTACACGTTGCGGTGTATTTAG
AGTACTACTTTGAAGTACACTTGTTCATTGCATTTTTCTGTACAACTAGA
ACCAACCGGGGCCACACAGGAGGGGGTAAACACTGGAGCTTTTTTCTTCT
TTTTCTGGTTCTTTTTTGCCCCAACTTCCTCCTGCGATGCTTGCCTTGGA
TTTTATCGCGAGAAGGGTGCAGCCATTCCTTTCCCTCGTCAACGTGCTAA
GTCGAAGTTTGGTACTCACGAGCTTTTTCAGCTATGTTATCGCTTTCACC
GGCAAAGTCGCAAAATAATCACCCTTGCTCGGAATTGAACTCCAGACTTT
CTGCTAGTGGGTTCGAAGTTGAACCACTAGGCTACCGGGGCGGCCGGCTT
TATGCTGTGCTGTTTTGATATATATGTAGCTCGTAGGCTTTTGTGCGCAC
GACGTTTCAGACCTTGTCCATCGGGTGCACCCCCCCTGTTTTCGTCCAGG
CGAAGACAACCCTGTGGGTGTCGGAGGTGCTCGCCGGCGTTGTGTGTTAC
CCCCCCCCCCCTTCTGCTGTTGGTTTATCCCTTTTTTTCAAACACCGCCC
CCCCCTTCCGTCGCCGGTCGTTGTTCAGGCGCTCCTGACCCTGTTGATCT
CGAATAACTTTGCGGAGATCAAGAGCTCGGTGTTCAAGAAGTTCGACAAG
CATAACCTGTTCCAACTGTCGTGCCACGACGTGGTGGAGCGGTTTAAGCT
GGCCCTGTTTCTGACGATGATCATGCTTCTGAACGTCTGCCAGGGGGCTG
GACGACCCGGTGTCGCAGGTGGGCACATAGAGATGGCTACTTTCACCCTC
TTATTTTTGCGTGTATGTTGTACCTAGCTTCTGAGTCTGTTGTCCACGCC
CAGCCTGTGAGGAATGCGTTGTTTGGTTGTTTGTGTTGCTTTCTGGGGCC
GTTTTGAGTTGTCGGCGGTTGCCATGGTTGGTTGGGCTTGGAGGTCGCCG
CGTTGCTGTCGGTATTGGCACCCCTGCTCAATGTCTGTCGGCAAGGGATC
GAGGATGAGCATACTCGGTCGCCGTTCGCCATCGTACTTTTGCTGTTGCT
GCGGGATGCCTTTTGTACGTGCGGCAAGCTTCCGCCTGTTGCGGGTTCGC
CGCTGATGGGCGGCGTTCTTCATGCTCTCGGGTCATGGATGTCGGCTGTG
TCGAGCAAGCAACACTCGAGAAGCTCATCAGTGCGGCAGGCACCCCGCGA
TAAGGAATCTGTCCTCTCCTGCGAGGGTGTAACGGATGCACAAAACCGAC
GTGCGCACCCATCCACCCGTCGGTCCTATTTGTTCCTGTTGCTTCTGCCT
CTTCCCTCGCAGTTCTCCACCATCTTCTTCATGGTGTTCGGGGGTGAGGT
GCTGGCTGATTGGATCAAGCACGGGTTCATCATTAAGTTTAACCAGCTCA
CGCCCTCCATCTACGACGAGTACTCAACCATCCTGGCAAGG
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Coding sequence (CDS) from alignment at C-linearis_contig91:643358..648448-

>mRNA_C-linearis_contig91.16844.1 ID=mRNA_C-linearis_contig91.16844.1|Name=mRNA_C-linearis_contig91.16844.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at C-linearis_contig91:643358..648448- (Chordaria linearis ClinC8C monoicous)
ATGGTGGCGGGACCTATCTCGCTGTTGGGGTACCTCAGGGTGGAGGTGTT
TGGGGCGGAGGATCATGGGGTGGTGGACACGCAGATGGTGGCGGGACCTA
TCTCGCTGTTGGGGTACCTCAGGGTGGAGGTGTTTGGGGCGGAGGATCAT
GGGGTGGTGGACACGCAGGCCAACCGCACGGTCAGAAACTTTTTGACGGT
GCCGAGGCAGCTAGAGAGGCTGCTGCTGTTCGGAATGCTGGTGTGCCTCG
ACACCTTCCTGTACGTCACCACCTTCCTGCCGATCAGGATTGTCATCGGG
CTCGTGACGACTATCTTCTCTATCATCACCAGGCCAACCGCACGGTCAGA
AACTTTTTGACGGTGCCGAGGCAGCTAGAGAGGCTGCTGCTGTTCGGAAT
GCTGGTGTGCCTCGACACCTTCCTGTACGTCACCACCTTCCTGCCGATCA
GGATTGTCATCGGGCTCGTGACGACTATCTTCTCTATCATCACCAGGCGA
ACCAGGCCGACGGTGAACCGCCCGCTGGTGTACGACTGGATGCGCGGGGC
AACCATCGCGGCCGCTCTGTGCTGCCTGCAGTTCCTCGAGATGTCGCGGG
TGTACCACTACATCAGGGGGCAGGCGATGGTAAAGCTGTACGTGCTAATC
GCCATGGTGGAGATCTTCGATAAGGCGAACCAGGCCGACGGTGAACCGCC
CGCTGGTGTACGACTGGATGCGCGGGGCAACCATCGCGGCCGCTCTGTGC
TGCCTGCAGTTCCTCGAGATGTCGCGGGTGTACCACTACATCAGGGGGCA
GGCGATGGTAAAGCTGTACGTGCTAATCGCCATGGTGGAGATCTTCGATA
AGCTGATGTGTTCCTTCGGCCAAGACGCGCTGGACTCCTGTACCTGACTG
ATGTGTTCCTTCGGCCAAGACGCGCTGGACTCCTGTACCTGA
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