mRNA_C-linearis_contig91.16831.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig91.16831.1
Unique NamemRNA_C-linearis_contig91.16831.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig91.16831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig91contigC-linearis_contig91:458425..458838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size415
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930779.441838-CDS-C-linearis_contig91:458424..4588381622930779.441838-CDS-C-linearis_contig91:458424..458838Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 458425..458838 +
1690881245.9141402-CDS-C-linearis_contig91:458424..4588381690881245.9141402-CDS-C-linearis_contig91:458424..458838Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 458425..458838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig91.16831.1prot_C-linearis_contig91.16831.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig91 458425..458838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig91.16831.1

>prot_C-linearis_contig91.16831.1 ID=prot_C-linearis_contig91.16831.1|Name=mRNA_C-linearis_contig91.16831.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=138bp
PLFPWSRRRRRHLPRRCWCCSCCRRCRQQGTRKGVEGGRGQEGACWMPEL
QQEIPAPNAGHRTAHSQQLSFGANAIVYLPSATRDYFIISAIRNKIWVLN
FERFLRVHADTHYIQHDHRACRLPSLWIFPRNPETLD*
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mRNA from alignment at C-linearis_contig91:458425..458838+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig91.16831.1 ID=mRNA_C-linearis_contig91.16831.1|Name=mRNA_C-linearis_contig91.16831.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=414bp|location=Sequence derived from alignment at C-linearis_contig91:458425..458838+ (Chordaria linearis ClinC8C monoicous)
CCGCTGTTTCCATGGTCTCGGCGGCGCCGCCGCCACCTACCCCGCCGTTG
CTGGTGCTGCTCGTGCTGCCGCCGCTGCCGCCAGCAAGGAACTCGTAAGG
GGGTAGAGGGAGGGAGGGGTCAGGAAGGGGCTTGTTGGATGCCGGAACTT
CAGCAAGAGATTCCAGCGCCAAACGCTGGACATCGCACCGCTCACTCCCA
ACAACTTTCGTTCGGCGCAAATGCAATAGTCTATCTTCCTTCGGCAACTC
GTGATTATTTCATTATTTCCGCGATCCGAAATAAAATCTGGGTGCTGAAT
TTTGAAAGATTTCTGAGAGTGCATGCAGACACACATTACATCCAACACGA
TCACCGAGCGTGTAGACTCCCCTCTCTCTGGATTTTCCCAAGGAACCCCG
AAACGCTTGATTGA
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Coding sequence (CDS) from alignment at C-linearis_contig91:458425..458838+

>mRNA_C-linearis_contig91.16831.1 ID=mRNA_C-linearis_contig91.16831.1|Name=mRNA_C-linearis_contig91.16831.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at C-linearis_contig91:458425..458838+ (Chordaria linearis ClinC8C monoicous)
CCGCTGTTTCCATGGTCTCGGCGGCGCCGCCGCCACCTACCCCGCCGTTG
CTGGTGCTGCTCGTGCTGCCGCCGCTGCCGCCAGCAAGGAACTCGTAAGG
GGGTAGAGGGAGGGAGGGGTCAGGAAGGGGCTTGTTGGATGCCGGAACTT
CAGCAAGAGATTCCAGCGCCAAACGCTGGACATCGCACCGCTCACTCCCA
ACAACTTTCGTTCGGCGCAAATGCAATAGTCTATCTTCCTTCGGCAACTC
GTGATTATTTCATTATTTCCGCGATCCGAAATAAAATCTGGGTGCTGAAT
TTTGAAAGATTTCTGAGAGTGCATGCAGACACACATTACATCCAACACGA
TCACCGAGCGTGTAGACTCCCCTCTCTCTGGATTTTCCCAAGGAACCCCG
AAACGCTTGATTGACCGCTGTTTCCATGGTCTCGGCGGCGCCGCCGCCAC
CTACCCCGCCGTTGCTGGTGCTGCTCGTGCTGCCGCCGCTGCCGCCAGCA
AGGAACTCGTAAGGGGGTAGAGGGAGGGAGGGGTCAGGAAGGGGCTTGTT
GGATGCCGGAACTTCAGCAAGAGATTCCAGCGCCAAACGCTGGACATCGC
ACCGCTCACTCCCAACAACTTTCGTTCGGCGCAAATGCAATAGTCTATCT
TCCTTCGGCAACTCGTGATTATTTCATTATTTCCGCGATCCGAAATAAAA
TCTGGGTGCTGAATTTTGAAAGATTTCTGAGAGTGCATGCAGACACACAT
TACATCCAACACGATCACCGAGCGTGTAGACTCCCCTCTCTCTGGATTTT
CCCAAGGAACCCCGAAACGCTTGATTGA
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