mRNA_C-linearis_contig91.16826.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig91.16826.1 vs. uniprot
Match: A0A6H5KZD6_9PHAE (Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZD6_9PHAE) HSP 1 Score: 328 bits (842), Expect = 3.050e-102 Identity = 198/339 (58.41%), Postives = 225/339 (66.37%), Query Frame = 2
Query: 41 DLPQHLHRQRKWYRLGYVTVNTTAVVVIGNIPGTFLWGPDAGETADGEAFAVFLATIAISVFAFLLVQGSNPGYLSAGRGMGGFGLGDLAEEEGTELLVPEVESQYRR--REGVEEPGAARQQLLADTAASSTDRVPGPAEDTRRTERSKDGDTGGNINSGDRGGSGGGGPLGRGDFIRCGRCEGMQVPLRSHHCRQCGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSLVEAVRIMASGFSETRELETLAFVCALAPLVNTLSRTQRVCGPSSAGHWPSRNALALVSSLCLWPCLVLAVVLLVTHTWMATSSLTSYECLRGAGRGPDSLSYLE 1051
D P HL R RKWYR GY+ VN AVV+IGNIPGTFLW +AGE DGE F+VFLA +A+S+ AFL VQGSNPGYL R G G G AEEE T L V+ Q +E EE G AR LL T S P E+ + TE ++ + IN+ G G G L R DF+RC RC+ M+VPLRSHHCR CGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSL EA+RI SGFS+ + + L+P V T ++ G W SRNALAL S CLWPC L+VVLLVTH+WMA SSLTSYECLRG GRGPDSL YLE
Sbjct: 5 DFPNHLRRVRKWYRSGYLAVNGAAVVLIGNIPGTFLWDQEAGEAVDGETFSVFLAAVALSILAFLAVQGSNPGYLFVQRDWVGDG-GTEAEEETTCLTAEPVQHQSHTHDQEKGEEAGEAR--LLTSTITSRDHASKKPVEEGQPTEGNEKSSS---INTASVVG-GFEGSLTRPDFVRCRRCQDMEVPLRSHHCRACGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSLAEAIRITMSGFSDDGD----RYSFTLSPAVGEAGATTPTESTTAEGSWASRNALALACSCCLWPCFALSVVLLVTHSWMAISSLTSYECLRGGGRGPDSLEYLE 332
BLAST of mRNA_C-linearis_contig91.16826.1 vs. uniprot
Match: D7FP12_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP12_ECTSI) HSP 1 Score: 203 bits (517), Expect = 1.560e-57 Identity = 133/227 (58.59%), Postives = 150/227 (66.08%), Query Frame = 2
Query: 41 DLPQHLHRQRKWYRLGYVTVNTTAVVVIGNIPGTFLWGPDAGETADGEAFAVFLATIAISVFAFLLVQGSNPGYLSAGRGMGGFGLGDLAEEEGTELLV-PEVE--SQYRRREGVEEPGAARQQLLADTAASSTDRVPGPAEDTRRTERSKDGDTGGNINSGDRGGSGGGGPLGRGDFIRCGRCEGMQVPLRSHHCRQCGRCVATFDXXXXXXXXXXGERNHCRFWW 712
D P HL R RKWYR GY+ VN AVV+IGNIPGTFLW +AGE DGEAF+VFLA + +S+ AFL VQGSNPGYLS R G G AEEE T L PEV+ S E E+ G AR LL T SS P E+ + TE + D IN+ G G G L R DF+RC RC+ M+VPLRSHHCR+CGRCVATFDXXXXXXXXXXGERNHCRFWW
Sbjct: 5 DFPNHLRRVRKWYRSGYLAVNGAAVVLIGNIPGTFLWDQEAGEAVDGEAFSVFLAAVVLSILAFLAVQGSNPGYLSVQRDWVG-DSGTEAEEETTCLTATPEVQHHSHPHDEEKGEQSGEAR--LLTSTITSSDHAPKKPVEEGQPTEGN---DKSSIINTPSVVG-GFEGSLTRPDFVRCRRCQDMKVPLRSHHCRECGRCVATFDXXXXXXXXXXGERNHCRFWW 224
BLAST of mRNA_C-linearis_contig91.16826.1 vs. uniprot
Match: A0A6T7JK16_9STRA (Palmitoyltransferase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7JK16_9STRA) HSP 1 Score: 190 bits (482), Expect = 2.310e-50 Identity = 156/444 (35.14%), Postives = 208/444 (46.85%), Query Frame = 2
Query: 80 RLGYVTVNTTAVVVIGNIPGTFLW--GPDAGETADGEAFAVFLATIAISVFAFLLVQGSNPGYLSA----------GRGMGGF-GLGDLAEEEGTEL-LVPEVESQYRRREGVEEPGAARQQLLADTAASSTDRVPGPAEDTRRTERSKDGDTGGNINSGDRGGSGGGGPLGRGDFIR--------------------CGRCEGMQVPLRSHHCRQCGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSLVEAVRIMASGFSETRELETLAFVCALAPLVNTLSRTQRVCGPSSAGHWPSRNALALVSSLCLWPCLVLAVVLLVTHTWMATSSLTSYECLRGAGRGPDSLSYLEGTRDFDLPFSEGLSGNLRGFCCTRGGDALLRALVRGRRPLRTGPAAATGGAEARWRPRVWKLPGRIVRDSEDWRSNLWENKYWSCC 1309
RL Y+ + AV + N PGT LW ++ + D E + + LLVQGS+PGYL+A G + G+ G + EEG +L L P VE RRR + D A ST+ V P+ + S+DG N + G+ G L D + C RC+ PLRSHHC+ C CVAT XXXXXXXXXXGERNHCRFWWFL Q + +E RI+ S + L ++ S W N + + L L+P ++ ++L + HT+ AT+++T++EC GR + YLEGT + DLPFS G+ NLR FCC R D+ L L E +W+P WK PG+IVRDSEDW N W+NKYWSCC
Sbjct: 59 RLIYLGTSLLAVTLSYNAPGTKLWVQNGESLSSVDRETLVELVVVFVLVWVTLLLVQGSDPGYLTADIVSQLCKEDGISLLGYDGTPSMETEEGDQLSLTPIVEMTTRRRSN---------HVRTDKAEHSTNLVASPS--SPGLNESRDG------NGLENWGTSQEGTLSPLDILPXXXXXXXXXXXXXXXRRRKVCQRCQ-FAPPLRSHHCKICDTCVATXXXXXXXXXXXXGERNHCRFWWFLSMQMLGFLECCRIVHSSSYGSFHLFHVS--------------------KESNVPW-MHNLIVIAGKLYLYPLTLITIMLWIAHTFFATANMTTFEC----GRSSKHVDYLEGTIETDLPFSAGVDNNLRMFCCFR--DSCLSFLT----------------GEPQWKPIAWKPPGKIVRDSEDWWENPWQNKYWSCC 441
BLAST of mRNA_C-linearis_contig91.16826.1 vs. uniprot
Match: A0A6U5KJH5_9STRA (Palmitoyltransferase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5KJH5_9STRA) HSP 1 Score: 182 bits (462), Expect = 1.030e-47 Identity = 140/455 (30.77%), Postives = 198/455 (43.52%), Query Frame = 2
Query: 89 YVTVNTTAVVVIGNIPGTFLWG------PDAGETADGEAFAVFLATIAISVFAFLLVQGSNPGYLSA----------GRGM-GGFGLGD---LAEEEGTE---------------LLVPEVESQYRRREGVEEPGAARQQLLADTAASSTDRVPGPAEDT--RRTERSKDGDTGGNINSGDRGGSGGGGPLGRGDFIR-----------CGRCEGMQVPLRSHHCRQCGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSLVEAVRIMASGFSETRELETLAFVCALAPLVNTLSRTQRVCGPSSAGHWPSRNALALVSSLCLWPCLVLAVVLLVTHTWMATSSLTSYECLRGAGRGPDSLSYLEGTRDFDLPFSEGLSGNLRGFCCTRGGDALLRALVRGRRPLRTGPAAATGGAEARWRPRVWKLPGRIVRDSEDWRSNLWENKYWSCC 1309
Y+++ V++ ++P T LW P + ET + E A + T + + +FLL+ GS+PGYL G G+ GG GD L E G E LLVP V S E + A R P D+ R++R + + R + + C RC PLR+HHC+ C RCVATFD GERNHCRFWWFL Q + + + I+ S R + TQ + + L +V S+ LW ++ A+++ VTH++ A S+ TS+EC G+GP + YL GT++ D+PFS+G+ N+RGFCC R D LVR RW P +WK PG++VRDSEDW ++ WENKY+SCC
Sbjct: 28 YLSLVAVTVILTSSVPRTRLWNGGDIGEPQSFETLNNETLADLVFTTLLLIVSFLLLNGSDPGYLDIATMEELGKIDGIGLLGGRISGDDDGLHPESGIEMSEIGSSSTNPDRHCLLVPSVSSVPTASLEFESVVPISSDQSQPSTAPGASRRPAAVRDSIRARSDRRR---------------------VMRAEALALPPHASTRRGVCDRCH-FAPPLRAHHCKHCDRCVATFDHHCFLIGTCIGERNHCRFWWFLTFQLLGFMTCISILNSRVDGYRGGDD----------------TQEYVKEDRFFFF-NDQLLVIVVSIYLWALMITAMIMWVTHSFFAISNYTSFEC----GKGPAYIDYLAGTKNCDMPFSKGIDANVRGFCCFR--DRAWDFLVRN---------------NERWIPILWKPPGKVVRDSEDWWNHPWENKYYSCC 422
BLAST of mRNA_C-linearis_contig91.16826.1 vs. uniprot
Match: A0A485K8G1_9STRA (Palmitoyltransferase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K8G1_9STRA) HSP 1 Score: 155 bits (393), Expect = 1.450e-38 Identity = 134/431 (31.09%), Postives = 191/431 (44.32%), Query Frame = 2
Query: 62 RQRKW-YRLGYVTVNTTAVVVIGNIPGTFLWGPDAGETADGE--AFAVFLATIAISVFAFLLVQGSNPGYLSAG--RGM-GGFGL---GDLAEEEGTELLVPEVESQYRRRE-GVEEPGAARQQLLADTAASSTDRVPGPAEDTRRTERSKDGDTGGNINSGDRGGSGGGGPLGRGDFIRCGRCEGMQVPLRSHHCRQCGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSLVEAVRIMASGFSETRELETLAFVCALAPLVNTLSRTQRVCGPSSAGHW----PSRNALALVSSLCLWP-CLVLAVVLLVTHTWMATSSLTSYECLRGAGRGPDSLSYLEGTRDFDLPFSEGLSGNLRGFCCTRGGDALLRALVRGRRPLRTGPAAATGGAEARWRPRVWKLPGRIVRDSEDWRSNLWENKYWSCC 1309
++ KW YR+G + + ++ IPG+ L +T + + LA +A + ++ VQGS+PGY++ R + GG L + +E+ EL E +YR+++ E A++Q L D +A +T V A T +F C C ++ PLR++HC C RCVATFD GERNHCRFWWFLL ++ + + I+ SGF AP + + + W + + S+ C W CLV A +T +A LT+ R G+GP+ L+YL GTR+ DLPFS GL GNL GFCC R G R P W P+ WK GRI R+S+ NLWENKY+SCC
Sbjct: 14 KKYKWAYRVGCPAIKLMLLCLLLEIPGSRLRITRRDKTWEWNWSELHMLLAIVAAATLSYYAVQGSDPGYVTEDMVRSIEGGDSLLNEYEFDDEDDLELSKAR-EIEYRKKKIQAMEATLAKEQELQDESAETTASVNVEAAKTM-------------------------------EF--CTTCN-LEPPLRAYHCAFCQRCVATFDHHCFCIGTCVGERNHCRFWWFLLLTSIEIYTCLGIVHSGFHT-------------APTIQVWLKANCMALVGVVFFWCFAFSAYSLFGFHSTFCSWSECLVYA------NTIVAFLMLTN-STTRELGKGPEKLAYLRGTRECDLPFSNGLCGNLGGFCCVRAGL---------RHPKD-------------WTPQQWKPVGRIDRNSDRICDNLWENKYYSCC 367
BLAST of mRNA_C-linearis_contig91.16826.1 vs. uniprot
Match: A0A6G0W546_9STRA (Palmitoyltransferase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W546_9STRA) HSP 1 Score: 152 bits (384), Expect = 1.540e-37 Identity = 90/240 (37.50%), Postives = 120/240 (50.00%), Query Frame = 2
Query: 590 MQVPLRSHHCRQCGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSLVEAVRIMASGFSETRELETLAFVCALAPLVNTLSRTQRVCGPSSAGHWPSRNALALVSSLCLWPCLVLAVVLLVTHTWMATSSLTSYECLRGAGRGPDSLSYLEGTRDFDLPFSEGLSGNLRGFCCTRGGDALLRALVRGRRPLRTGPAAATGGAEARWRPRVWKLPGRIVRDSEDWRSNLWENKYWSCC 1309
++ PLR++HC C RCVATFD GE+NHCRFWWFL ++ + + I+ SG+ AP TLS W + N+LALV++L W A L HT++ ++ T+ E G+GP+ L+YL GTR+ DLPFS G+ NL GFCC R G RRP W P WK G+I R++E+ NLWENKY+SCC
Sbjct: 161 LEPPLRAYHCGYCNRCVATFDHHCFCIGTCIGEKNHCRFWWFLFLTSIEVYTCIGIVHSGYQS-------------AP---TLSA------------WLNANSLALVATLFFWCFAFTAYSLFGFHTFLMLTNSTTREL----GKGPEKLAYLRGTRECDLPFSNGVLRNLSGFCCIRAGC---------RRP---------------WAPEAWKPVGKIERNAENICDNLWENKYYSCC 344
BLAST of mRNA_C-linearis_contig91.16826.1 vs. uniprot
Match: A0A024TQD3_9STRA (Palmitoyltransferase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TQD3_9STRA) HSP 1 Score: 148 bits (374), Expect = 3.630e-37 Identity = 98/246 (39.84%), Postives = 129/246 (52.44%), Query Frame = 2
Query: 572 CGRCEGMQVPLRSHHCRQCGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSLVEAVRIMASGFSETRELETLAFVCALAPLVNTLSRTQRVCGPSSAGHWPSRNALALVSSLCLWPCLVLAVVLLVTHTWMATSSLTSYECLRGAGRGPDSLSYLEGTRDFDLPFSEGLSGNLRGFCCTRGGDALLRALVRGRRPLRTGPAAATGGAEARWRPRVWKLPGRIVRDSEDWRSNLWENKYWSCC 1309
C C+ +Q PLR++HC C RCVATFDXXXXXXXXXX E+NHCRFWWFLL ++ + + ++ SGF L+ W N++ALV+ L + A L HT++ ++ T+ E G+GPD+L+YL GTR+ DLPFS GL NL GFCC R G + LR P W P WK G+I R+S + NLWEN+Y+SCC
Sbjct: 57 CTVCQ-LQPPLRAYHCAFCNRCVATFDXXXXXXXXXXXEKNHCRFWWFLLLTSLEVYSCLGVVHSGFHSATSLQ----------------------------GWLQLNSIALVAVLFFYTFAATAYSLCGFHTFLMLTNSTTREL----GKGPDNLAYLRGTRECDLPFSNGLVRNLGGFCCLRAGCPTI---------LRRQP----------WSPAAWKPVGKIERNSANICDNLWENQYYSCC 250
BLAST of mRNA_C-linearis_contig91.16826.1 vs. uniprot
Match: W4GRC4_9STRA (Palmitoyltransferase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GRC4_9STRA) HSP 1 Score: 150 bits (379), Expect = 8.740e-37 Identity = 130/416 (31.25%), Postives = 184/416 (44.23%), Query Frame = 2
Query: 71 KW-YRLGYVTVNTTAVVVIGNIPGTFLWGPDAGETADGE--AFAVFLATIAISVFAFLLVQGSNPGYLSAGRGMGGFGLGDLAEEEGTELLVPEVESQYRRREGVEEPGAARQQLLADTAASSTDRVPGPAEDTRRTERSKDGDTGGNINSGDRGGSGGGGPLGRGDFIRCGRCEGMQVPLRSHHCRQCGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSLVEAVRIMASGFSETRELETLAFVCALAPLVNTLSRTQRVCGPSSAGHWPSRNALALVSSLCLWPCLVLAVVLLVTHTWMATSSLTSYECLRGAGRGPDSLSYLEGTRDFDLPFSEGLSGNLRGFCCTRGGDALLRALVRGRRPLRTGPAAATGGAEARWRPRVWKLPGRIVRDSEDWRSNLWENKYWSCC 1309
KW YR+G V ++ IPG+ L +T + + L + + A+ VQGS+PGY++ + + E T L V + E R E + ++ A AA + S++ D ++ P DF C C+ +Q PLR++HC C RCVATFDXXXXXXXXXX ERNHCRFWWFL TV + + ++ SGF ++ W N++ALV++L + +A L HT++ ++ T+ E G+GPD L YL GTR+ DLPFS GL N+ GFCC R G G W P WK G+I R++ + NLWEN+Y+SCC
Sbjct: 18 KWAYRVGCPAVKALLFCLLLEIPGSSLRVTHRDKTWEWNWPEIQILLVIVGAATLAYYAVQGSDPGYVTEA-------MVQTSMESDTLLGVDDDELDLRGTSKAREIDYRKSKIAAMEAAL----------ELNNNATSENADASVELS-----------PAPTMDF--CTVCQ-LQPPLRAYHCGFCNRCVATFDXXXXXXXXXXXERNHCRFWWFLALTTVEVYACLGVVHSGFHAATSVQA----------------------------WIQLNSIALVAALFFYTFAAMAYSLCGFHTFIMLTNSTTREL----GKGPDKLPYLRGTRECDLPFSNGLVRNVGGFCCFRAG--------------------CRGMNRHEWTPTDWKPVGKIDRNAANICDNLWENQYYSCC 350
BLAST of mRNA_C-linearis_contig91.16826.1 vs. uniprot
Match: A0A7S0GL60_9STRA (Palmitoyltransferase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GL60_9STRA) HSP 1 Score: 145 bits (365), Expect = 2.470e-34 Identity = 134/448 (29.91%), Postives = 193/448 (43.08%), Query Frame = 2
Query: 56 LHRQRKWYRLG-YVTVNTTAVVVIGNIPGTFLWGPDAGETADGEAFAVF--------LATIAISVFAFLLVQGSNPGYL------SAGRGMGGF----GLGDLAEEEGTELLVPEVESQYRRREGVEEPGAARQQLLADTAASSTDRVPGPAEDTRRTERSKDGDTGGNINSGDRGGSGGGGPLGRGDFIR-CGRCEGMQVPLRSHHCRQCGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSLVEAVRIMASGFSETRELETLAFVCALAPLVNTLSRTQRVCGPSSAGHWPSRNALALVSSLCLWPCLVLAVVLLVTHTWMATSSLTSYECLRGAGRGPDSLSYLEGTRDFDLPFSEGLSGNLRGFCCTR-------GGDALLRALVRGRRPLRTGPAAAT---GGAEARWRPRVWKLPGRIVRDSEDWRSNLWENKYWSCC 1309
L R +W + YV+ + A + PGT +W G++ +G+ A + I++ AF V S+PGYL S G G G+L +E S R EG A T+ S D P F C C + PLR+HHCR C +CVATFDXXXXXXXXX GERNHCRFWWFL Q L ++ SG S + F+ + + S + + G +A+ ++S L ++P + A+++ V H+ +A ++T+YE ++G P L+YL+GT++ D PFS G N+R FCC R G +L V T ++++W P WK+P I RDS+D N W+NKY+SCC
Sbjct: 31 LKRVPRWKTIFIYVSSSLVAFFLTLLCPGTLMWNGGTGDSLEGQTTATLNQECLFELIVVWVITIVAFFSVHNSDPGYLNEYTLRSNNNKQNGAVMLDGRGELVDEN----------SSCNRVEGRNHKEAKELHRRLQTSQSIDDL-----------------------------------PYYNRLFQEVCQTCN-IMPPLRAHHCRICDKCVATFDXXXXXXXXXIGERNHCRFWWFLTFQLFGLWRYSSVIESGPS-------VLFIARV--VARNYSENKELLG----------HAVIILSKLYVYPLMACALIMWVFHSLLALCNVTTYEFVKG----PRELAYLKGTKECDFPFSRGPDSNIRMFCCFRDEVWSSLSGTEVLNNRVNTYYDNDTYVGQKNCKRRRSDSQWNPIFWKMPQNIYRDSDDCWENPWQNKYYSCC 409
BLAST of mRNA_C-linearis_contig91.16826.1 vs. uniprot
Match: A0A1V9Z7K6_9STRA (Zinc finger protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z7K6_9STRA) HSP 1 Score: 149 bits (377), Expect = 4.050e-34 Identity = 126/393 (32.06%), Postives = 173/393 (44.02%), Query Frame = 2
Query: 122 IGNIPGTFLWGPDAGETADGEAFAVFLATIAISVFAFLLVQGSNPGYLSAGRGMG--GFGLGDLAEEEGTELLVPEVESQYRRREGVEEPGAARQQLLADTAASSTDRVPGPAEDTRRTERSKDGDTGGNINSGDRGGSGGGGPLGRGDFIRCGRCEGMQVPLRSHHCRQCGRCVATFDXXXXXXXXXXGERNHCRFWWFLLAQTVSLVEAVRIMASGFSETRELETLAFVCALAPLVNTLSRTQRVCGPSSAGHWPSRNALALVSSLCLWPCLVLAVVLLVTHTWMATSSLTSYECLRGAGRGPDSLSYLEGTRDFDLPFSEGLSGNLRGFCCTRGGDALLRALVRGRRPLRTGPAAATGGAEARWRPRVWKLPGRIVRDSEDWRSNLWENK 1294
+ +I G+F W + LA + AF +QGS+PGY++ R M G GL + ++E ++ + E +YR+R+ V + L + ASSTD G A+ T DF PLRS+HC C +CVATFD XXXXXXXXXGERNHCRFWWF+L + + + I+ SGF L+ W N +AL +++ W +L L HT++ ++ T+ E G+GP+ L YL GTR+ DLPFS G+ GNLR FCC R G +A W P WK G+I RDS++ NLWENK
Sbjct: 36 VDSIDGSFHW--------NFSEIQWLLAVAMAATIAFYALQGSDPGYVTEVREMAMEGGGLLEDCDDEASDEEKLKREIEYRKRKIV-----LMELALVSSDASSTD---GEAKIATTTM----------------------------DFC---------TPLRSYHCAYCNKCVATFDHXXXXXXXXXGERNHCRFWWFILLSCIEVSTCLGIIHSGFRSEGSLKL----------------------------WLKSNGMALAAAMFFWFFALLTYSLCGFHTFLMLTNSTTREL----GKGPEKLKYLHGTRECDLPFSHGVCGNLRAFCCLR-----------------------PGWCKADWAPHTWKPVGKIDRDSDNIWDNLWENK 320 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig91.16826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig91.16826.1 >prot_C-linearis_contig91.16826.1 ID=prot_C-linearis_contig91.16826.1|Name=mRNA_C-linearis_contig91.16826.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=425bp MDLPQHLHRQRKWYRLGYVTVNTTAVVVIGNIPGTFLWGPDAGETADGEAback to top mRNA from alignment at C-linearis_contig91:423524..429649- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig91.16826.1 ID=mRNA_C-linearis_contig91.16826.1|Name=mRNA_C-linearis_contig91.16826.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6126bp|location=Sequence derived from alignment at C-linearis_contig91:423524..429649- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig91:423524..429649- >mRNA_C-linearis_contig91.16826.1 ID=mRNA_C-linearis_contig91.16826.1|Name=mRNA_C-linearis_contig91.16826.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2550bp|location=Sequence derived from alignment at C-linearis_contig91:423524..429649- (Chordaria linearis ClinC8C monoicous)back to top |