mRNA_C-linearis_contig91.16824.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig91.16824.1
Unique NamemRNA_C-linearis_contig91.16824.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig91.16824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig91contigC-linearis_contig91:377582..378035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size454
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig91.16824.1prot_C-linearis_contig91.16824.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig91 377621..378013 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930779.3541214-UTR-C-linearis_contig91:377581..3776201622930779.3541214-UTR-C-linearis_contig91:377581..377620Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 377582..377620 +
1690881245.8733327-UTR-C-linearis_contig91:377581..3776201690881245.8733327-UTR-C-linearis_contig91:377581..377620Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 377582..377620 +
1622930779.3915043-UTR-C-linearis_contig91:378013..3780351622930779.3915043-UTR-C-linearis_contig91:378013..378035Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 378014..378035 +
1690881245.9039073-UTR-C-linearis_contig91:378013..3780351690881245.9039073-UTR-C-linearis_contig91:378013..378035Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 378014..378035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930779.3748572-CDS-C-linearis_contig91:377620..3780131622930779.3748572-CDS-C-linearis_contig91:377620..378013Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 377621..378013 +
1690881245.8930762-CDS-C-linearis_contig91:377620..3780131690881245.8930762-CDS-C-linearis_contig91:377620..378013Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 377621..378013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig91.16824.1

>prot_C-linearis_contig91.16824.1 ID=prot_C-linearis_contig91.16824.1|Name=mRNA_C-linearis_contig91.16824.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=131bp
MVTPLRFGFSARGSWAPGSCPRVISRFCSGQKTVAVRIRQAKRCQRENAR
SIDGAGGRNRGAASPARAEGVCDGRAGGTSSGGMPVPCDSDHRREAGCAS
RPPAPRPPGPPAPCVLLRPRPVSSRDVAVG*
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mRNA from alignment at C-linearis_contig91:377582..378035+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig91.16824.1 ID=mRNA_C-linearis_contig91.16824.1|Name=mRNA_C-linearis_contig91.16824.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=454bp|location=Sequence derived from alignment at C-linearis_contig91:377582..378035+ (Chordaria linearis ClinC8C monoicous)
CGTCATGGTTGGAGAATTGACGACAAAAATCGTTCTTGGATGGTGACACC
GTTGCGGTTTGGGTTTTCGGCTCGTGGCTCATGGGCCCCTGGGTCCTGTC
CCCGGGTTATTTCACGTTTCTGCTCGGGTCAAAAAACAGTGGCCGTTCGA
ATTCGCCAGGCGAAGAGGTGCCAGAGAGAAAACGCCAGATCGATCGACGG
GGCAGGGGGCAGGAATAGAGGAGCGGCGAGTCCTGCCCGGGCGGAGGGAG
TTTGTGACGGTAGAGCGGGCGGAACTTCCTCCGGGGGAATGCCTGTGCCG
TGTGACAGTGACCATCGTCGCGAGGCCGGCTGTGCTTCCCGCCCTCCGGC
CCCCCGGCCCCCCGGCCCCCCGGCGCCTTGTGTGTTGTTGCGCCCTCGGC
CCGTATCTTCCCGAGATGTAGCCGTCGGGTAAGATTCTGACGTGCGTTTC
GTTC
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Coding sequence (CDS) from alignment at C-linearis_contig91:377582..378035+

>mRNA_C-linearis_contig91.16824.1 ID=mRNA_C-linearis_contig91.16824.1|Name=mRNA_C-linearis_contig91.16824.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at C-linearis_contig91:377582..378035+ (Chordaria linearis ClinC8C monoicous)
ATGGTGACACCGTTGCGGTTTGGGTTTTCGGCTCGTGGCTCATGGGCCCC
TGGGTCCTGTCCCCGGGTTATTTCACGTTTCTGCTCGGGTCAAAAAACAG
TGGCCGTTCGAATTCGCCAGGCGAAGAGGTGCCAGAGAGAAAACGCCAGA
TCGATCGACGGGGCAGGGGGCAGGAATAGAGGAGCGGCGAGTCCTGCCCG
GGCGGAGGGAGTTTGTGACGGTAGAGCGGGCGGAACTTCCTCCGGGGGAA
TGCCTGTGCCGTGTGACAGTGACCATCGTCGCGAGGCCGGCTGTGCTTCC
CGCCCTCCGGCCCCCCGGCCCCCCGGCCCCCCGGCGCCTTGTGTGTTGTT
GCGCCCTCGGCCCGTATCTTCCCGAGATGTAGCCGTCGGGTAAATGGTGA
CACCGTTGCGGTTTGGGTTTTCGGCTCGTGGCTCATGGGCCCCTGGGTCC
TGTCCCCGGGTTATTTCACGTTTCTGCTCGGGTCAAAAAACAGTGGCCGT
TCGAATTCGCCAGGCGAAGAGGTGCCAGAGAGAAAACGCCAGATCGATCG
ACGGGGCAGGGGGCAGGAATAGAGGAGCGGCGAGTCCTGCCCGGGCGGAG
GGAGTTTGTGACGGTAGAGCGGGCGGAACTTCCTCCGGGGGAATGCCTGT
GCCGTGTGACAGTGACCATCGTCGCGAGGCCGGCTGTGCTTCCCGCCCTC
CGGCCCCCCGGCCCCCCGGCCCCCCGGCGCCTTGTGTGTTGTTGCGCCCT
CGGCCCGTATCTTCCCGAGATGTAGCCGTCGGGTAA
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