mRNA_C-linearis_contig91.16819.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig91.16819.1
Unique NamemRNA_C-linearis_contig91.16819.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig91.16819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig91contigC-linearis_contig91:304951..306082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-24_000740.1
Exons2
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930783.4186325-CDS-C-linearis_contig91:304950..3051071622930783.4186325-CDS-C-linearis_contig91:304950..305107Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 304951..305107 +
1690881247.926005-CDS-C-linearis_contig91:304950..3051071690881247.926005-CDS-C-linearis_contig91:304950..305107Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 304951..305107 +
1622930783.435613-CDS-C-linearis_contig91:306041..3060821622930783.435613-CDS-C-linearis_contig91:306041..306082Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 306042..306082 +
1690881247.9377556-CDS-C-linearis_contig91:306041..3060821690881247.9377556-CDS-C-linearis_contig91:306041..306082Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 306042..306082 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig91.16819.1prot_C-linearis_contig91.16819.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig91 304951..306082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig91.16819.1

>prot_C-linearis_contig91.16819.1 ID=prot_C-linearis_contig91.16819.1|Name=mRNA_C-linearis_contig91.16819.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=66bp
ISKPAAVLICGVPFLSSPVPQHLATQQRSEAETSRRSVTGRRVLQLIILG
DKVETKQVTPRTAPV*
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mRNA from alignment at C-linearis_contig91:304951..306082+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig91.16819.1 ID=mRNA_C-linearis_contig91.16819.1|Name=mRNA_C-linearis_contig91.16819.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1132bp|location=Sequence derived from alignment at C-linearis_contig91:304951..306082+ (Chordaria linearis ClinC8C monoicous)
ATCAGTAAACCCGCCGCAGTTCTCATCTGCGGGGTCCCCTTTCTGTCCTC
TCCTGTGCCACAACACCTCGCCACGCAGCAACGCAGCGAAGCAGAGACTT
CGCGGAGGAGTGTGACAGGCAGAAGGGTACTACAACTGATCATCTTGGGA
GACAAAGGTGTGTGTTTGTGTCGCTTATGGTCTGTGCGCATTTGCATGGG
GACACGCTGCTCTCTCGACCGCGAGGTACGCTCCGGCGCATTTGAGATGA
CGACGAGGCATCCTTTCACCGCCCCAAACCGACGGGAATGTGCTCCTATG
ACGTGTTAGGTGACTTTCTGCCCCTCACTTTTTATTTTTGCGACCCGTGC
GTACGATGGTTGAATGTATCTACGCTAGATATCACCCCCCATGTTTTTGA
TAAAAAAACAGGAAATCAAAGAGACAACCTCCCCACAAGTGAGATGGAAC
TCAAAGTGAAGATTAGCAGTTCTATACAGTGACTTATTATGGATGCAGTT
GAGAAAAAACACCTGGAACTAAAAAACAATAAATACCTCCCTGCACAACT
TTTTGCAGCGCCGCCGCGGGACTGTGCGCACACCCCCACCTCTCCGAACA
TTTTTTTTACGGGGGTACTCCCACCCTCCCACATTCTAAAAATGTGTCCA
CAGCAGTCGGAGCTTCCATTTTACTTGATTTGAAAGCCTGGCCTGTGGCG
TGAGCACGTTTTCTTCGATATCTCGGCGCTGATGTGTCGGATCGCGCTCA
TTCTTTTCGCACAAGATGCGGGCCAGCCACACCATGGACGCTGCGTCAAC
TATGTACGTGAAGATTCTGAATTTTTAAGCTCGATTCAGTGTTCCGGGCG
AAAAGTGTAGACATTTGGGTGTACCAAACCTCACCATTTTGTTCGCTGGC
CCTGAAATTTTGCACAGCGGTGTGTCTGACCGACTCCCACCCATATCTGT
AAAACAACGAGCAAAATCGAAGCAATCAAGACAGTATTGTTGCATCCACG
GGCCCCCTCGGCCACCACCTTGCCTCCGCCCTTCATCACCACGACGGCCG
CCACCACTCTGCCCCCGTCTGTCCATCGCATTTTGTTCGAGTAGAAACAA
AGCAGGTGACACCAAGAACGGCGCCCGTGTAG
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Coding sequence (CDS) from alignment at C-linearis_contig91:304951..306082+

>mRNA_C-linearis_contig91.16819.1 ID=mRNA_C-linearis_contig91.16819.1|Name=mRNA_C-linearis_contig91.16819.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at C-linearis_contig91:304951..306082+ (Chordaria linearis ClinC8C monoicous)
ATCAGTAAACCCGCCGCAGTTCTCATCTGCGGGGTCCCCTTTCTGTCCTC
TCCTGTGCCACAACACCTCGCCACGCAGCAACGCAGCGAAGCAGAGACTT
CGCGGAGGAGTGTGACAGGCAGAAGGGTACTACAACTGATCATCTTGGGA
GACAAAGATCAGTAAACCCGCCGCAGTTCTCATCTGCGGGGTCCCCTTTC
TGTCCTCTCCTGTGCCACAACACCTCGCCACGCAGCAACGCAGCGAAGCA
GAGACTTCGCGGAGGAGTGTGACAGGCAGAAGGGTACTACAACTGATCAT
CTTGGGAGACAAAGTAGAAACAAAGCAGGTGACACCAAGAACGGCGCCCG
TGTAGTAGAAACAAAGCAGGTGACACCAAGAACGGCGCCCGTGTAG
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