mRNA_C-linearis_contig91.16814.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig91.16814.1
Unique NamemRNA_C-linearis_contig91.16814.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig91.16814.1 vs. uniprot
Match: D8LSK8_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK8_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.650e-17
Identity = 60/139 (43.17%), Postives = 81/139 (58.27%), Query Frame = 2 
Query:  197 QSLVRVLLDAAAGRRVGKFWGTEAHSYATVVAAG--DGRAKIVKMLVTAEGAGRQQHWARVRLSDIPALFSAANRGSVSTVAILLAAGADELARDNDGYRARDFAGMGLPA---NDSKTPAVKRTLQRAPAHRALSWTW 598
            Q +VRVLL     + +G   G +    A   AA    GRA IV+ML++AEG  R+ HWAR R  + P L SA + G++S   +LLAAGADE A + DG  AR+  G   P+   + +K  A+ R L+R PA+RA SW W
Sbjct:  343 QEVVRVLLTDRGMKAIG---GADVIPRAVGAAASARKGRASIVRMLLSAEGHEREGHWARCRYKEDPVLHSAVSFGNISATRVLLAAGADETAENEDGRPAREVVGFNAPSLQRDPAKKGAIVRMLERGPAYRARSWAW 478
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BLAST of mRNA_C-linearis_contig91.16814.1 vs. uniprot
Match: A0A6H5JSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.210e-15
Identity = 54/135 (40.00%), Postives = 75/135 (55.56%), Query Frame = 2 
Query:  302 GRAKIVKMLVTAEGAGRQQHWARVRLSDIPALFSAANRGSVSTVAILLAAGADELARDNDGYRARDFAGMGLPA---NDSKTPAVKRTLQRAPAHRALSWTW-STALCSKGGGAAAGGLCESSPAPVGVRILPAE 694
            GRA IV+ML++AEG  R+ HWAR R  + P L  A + G++S   +LLAAGADE A + DG  AR+  G   P+   + +K  A+ R L R PA+RA SW W +TA     G   A     ++P   G     ++
Sbjct:  385 GRASIVRMLLSAEGHEREGHWARCRYKEDPVLHCAVSFGNISATRVLLAAGADETAENEDGRPAREVVGFNAPSLQRDPAKKGAIVRMLARGPAYRARSWAWPATARAYTAGHTCAAAATTAAPGACGAAAASSD 519
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BLAST of mRNA_C-linearis_contig91.16814.1 vs. uniprot
Match: D8LSK4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSK4_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 9.800e-14
Identity = 55/138 (39.86%), Postives = 78/138 (56.52%), Query Frame = 2 
Query:  197 QSLVRVLLDAAAGRRVGKFWGTEAHSYATVVAAGDGRAKIVKMLVTAEGAGRQQHWARVRLS-DIPALFSAANRGSVSTVAILLAAGADELARDNDGYRARDFAGMGLPA---NDSKTPAVKRTLQRAPAHRALSWTW 598
            +S++R+L        VG   G      +   A   G+A+I+++L+ AEG  RQ+HWAR RL    P ++ AA  G ++ V +LLAAGADE   D DGY A +  G  LP+   +  +  A+ R LQR PA+RA SW W
Sbjct:  235 ESILRILCSERGMDAVGG--GAAVLPNSLACATRRGKARILRLLLAAEGQERQEHWARRRLVLGRPLVYLAAAYGILANVKVLLAAGADETETDPDGYAAPEVIGGQLPSGTLDPLEAAAIGRELQRGPAYRARSWAW 370
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BLAST of mRNA_C-linearis_contig91.16814.1 vs. uniprot
Match: A0A6H5JK53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK53_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.200e-7
Identity = 56/138 (40.58%), Postives = 75/138 (54.35%), Query Frame = 2 
Query:  203 LVRVLLDAAAGRRVGKFWGTEAHSYATVVAAGDGRAKIVKMLVTAEGAGRQQHWARVRLSDIPALFSAANRGSVSTVAILLAAGADELARDNDGYRARDFAGMGL--PANDS--KTPAVKRTLQRAPAHRALSWTWST 604
            +VR++L+    R VG   G  A   +  VA    +AKI++MLV+AEG   ++ WA  RL D   L  AA   SV  + +LL+AGA E   +  G  A +  G+ L  PA  S  K  AV R LQR PA+RA S+ W T
Sbjct:  223 MVRMMLEHGINR-VG---GLGAIPNSIGVAVQGRQAKILEMLVSAEGEENRRKWAECRLRDGTPLHLAAAWVSVRAIHVLLSAGARETLPNGYGKLASEEVGIALRPPARRSPRKEAAVVRMLQRGPAYRARSYGWPT 356
[Close]
BLAST of mRNA_C-linearis_contig91.16814.1 vs. uniprot
Match: D7G4M4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M4_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 2.510e-7
Identity = 56/138 (40.58%), Postives = 75/138 (54.35%), Query Frame = 2 
Query:  203 LVRVLLDAAAGRRVGKFWGTEAHSYATVVAAGDGRAKIVKMLVTAEGAGRQQHWARVRLSDIPALFSAANRGSVSTVAILLAAGADELARDNDGYRARDFAGMGL--PANDS--KTPAVKRTLQRAPAHRALSWTWST 604
            +VR++L+    R VG   G  A   +  VA    +AKI++MLV+AEG   ++ WA  RL D   L  AA   SV  + +LL+AGA E   +  G  A +  G+ L  PA  S  K  AV R LQR PA+RA S+ W T
Sbjct:  278 MVRMMLEHGINR-VG---GLGAIPNSIGVAVQGRQAKILEMLVSAEGEDNRRKWAECRLRDGTPLHLAAAWVSVRVMHVLLSAGARETLPNRYGKLAGEEVGIALGPPARRSPRKEAAVVRMLQRGPAYRARSYGWPT 411
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig91.16814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LSK8_ECTSI1.650e-1743.17Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JSC7_9PHAE1.210e-1540.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSK4_ECTSI9.800e-1439.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JK53_9PHAE1.200e-740.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4M4_ECTSI2.510e-740.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig91contigC-linearis_contig91:250378..252543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue3.4e-18
Seed eggNOG ortholog2880.D8LSK8
KEGG koko:K10380
KEGG Pathwayko04624,ko05205,map04624,map05205
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons2
Model size1528
Cds size576
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig91.16814.1prot_C-linearis_contig91.16814.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig91 250526..251101 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930782.9338834-UTR-C-linearis_contig91:250377..2505251622930782.9338834-UTR-C-linearis_contig91:250377..250525Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 250378..250525 +
1690881247.6888711-UTR-C-linearis_contig91:250377..2505251690881247.6888711-UTR-C-linearis_contig91:250377..250525Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 250378..250525 +
1622930782.9703622-UTR-C-linearis_contig91:251101..2511041622930782.9703622-UTR-C-linearis_contig91:251101..251104Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 251102..251104 +
1690881247.727483-UTR-C-linearis_contig91:251101..2511041690881247.727483-UTR-C-linearis_contig91:251101..251104Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 251102..251104 +
1622930782.9886649-UTR-C-linearis_contig91:251742..2525431622930782.9886649-UTR-C-linearis_contig91:251742..252543Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 251743..252543 +
1690881247.7388554-UTR-C-linearis_contig91:251742..2525431690881247.7388554-UTR-C-linearis_contig91:251742..252543Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 251743..252543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930782.9524202-CDS-C-linearis_contig91:250525..2511011622930782.9524202-CDS-C-linearis_contig91:250525..251101Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 250526..251101 +
1690881247.7135744-CDS-C-linearis_contig91:250525..2511011690881247.7135744-CDS-C-linearis_contig91:250525..251101Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 250526..251101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig91.16814.1

>prot_C-linearis_contig91.16814.1 ID=prot_C-linearis_contig91.16814.1|Name=mRNA_C-linearis_contig91.16814.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=192bp
MPWATRRRYRWFSHVSQSLVRVLLDAAAGRRVGKFWGTEAHSYATVVAAG
DGRAKIVKMLVTAEGAGRQQHWARVRLSDIPALFSAANRGSVSTVAILLA
AGADELARDNDGYRARDFAGMGLPANDSKTPAVKRTLQRAPAHRALSWTW
STALCSKGGGAAAGGLCESSPAPVGVRILPAEGPAFHHGPV*
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mRNA from alignment at C-linearis_contig91:250378..252543+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig91.16814.1 ID=mRNA_C-linearis_contig91.16814.1|Name=mRNA_C-linearis_contig91.16814.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2166bp|location=Sequence derived from alignment at C-linearis_contig91:250378..252543+ (Chordaria linearis ClinC8C monoicous)
TGCCTACATCCGCTTTCTGAATGTAAAAGTACACTTCGTATGTACATACG
AGCACGTGTTGCTGTCTGCTCTTCAGCAGCGCGGTCATTATGCCCCACAA
CTTCCTCGCTCCCCTATACCCCCACAAATCGCACTTTGAAATATTGAAAT
GCCGTGGGCGACCCGACGCAGGTACCGTTGGTTTTCGCACGTTTCGCAGA
GCTTGGTACGCGTGCTACTTGACGCAGCAGCGGGGCGGCGGGTGGGAAAG
TTCTGGGGAACGGAAGCGCATTCCTACGCCACCGTCGTGGCCGCCGGCGA
CGGACGCGCGAAGATCGTCAAGATGCTCGTCACGGCCGAGGGCGCAGGCC
GGCAGCAGCACTGGGCGAGAGTCCGCCTGAGCGACATACCGGCACTCTTT
TCCGCGGCCAACCGGGGCTCCGTCTCGACCGTCGCCATCCTCCTCGCCGC
CGGCGCGGACGAACTCGCCCGCGACAACGACGGCTATCGCGCGAGGGATT
TCGCGGGAATGGGACTCCCGGCGAACGACAGCAAGACGCCCGCCGTCAAG
CGTACGTTGCAGCGGGCGCCTGCTCACCGGGCCCTTTCTTGGACGTGGTC
CACCGCCTTGTGTTCTAAAGGCGGCGGTGCTGCCGCCGGGGGGCTTTGTG
AGTCGAGTCCGGCCCCAGTAGGTGTCCGCATTCTTCCGGCCGAGGGCCCC
GCTTTTCATCACGGCCCGGTTTAGCAGGTGAGTGCAAGACGCAACACCCT
TGTAGGCGTGGATCTTGGCACGTTTTGCTTTGGTTGCGCGCGCGTCGAAT
ATGTCATGTGTCACCGTGGGGTGGTGGTCAACCATACGGCTCGCTTAGGT
GAAAGTGTTGGGTCTCGCGACAACCCTCATTTTCGCGTGCTCTCTGTTGG
CCACGTTTGCCTCGCATGGATGGAAGAGGGCGTAGAACCCCCTCCTGCAG
AGGCAGAACGTGTTGCTCTTTTTTGTTGTAATGTTGTACAGAGCATGATA
CATCTTTTGCAGTACCTTGTTGTTGTCTTGCACCCGTACTAGTCCAATGG
GAGGCGAACGCCTTTCCGCCCCCTGTCAACTTGCCCGACTCACTCAAGTA
TTTTCTGTGATTGCAAAATGGTTCTTGAGATGGCGATCAGGTCGGGACTG
CCCTAGCTTTACACAACCAAATTTGCAACATTTGCTGTGGATAGCCGCGC
ATCCCGAAACTGACTTACTATCCGGCGCCGTTTGCTGCACCATTGTGGAC
CTGCCAATAGTGGGCTACTGGATTATGTTGAGCCAAGCTACGTTCACTAT
CGTTTGAGAGTCGCCTACCTATTCAATCGCGAGTGTCTTGTTTCTTGATC
TCGGTCTGGTCTCAGGTATTTTGGCAAGTTGTGAGGGACTGGGGAAGACG
TCAGCATACTCTGGGCGCCGAGTAACTTGTGCTTTGTGTGCAGTGCTCCA
CATGCGATGGGCGAAAGGCTCAGCGCCTTGGGGTGTTTCGGGAGCATTCC
TGCGCTTGTGCTGCTCGGGGTGGACGCATTCGGTGACCTAGGGAAGAGCA
TATCGCCGGTTTTCGTTGTTGATCTTGCTAGACTGTCTAGAAATGTCCAC
CACGGCTGTAAGTGGCGCACTTTGCTCTTGGAAGAGCACCTTGGAGGGTT
TGTTGTTGACTTGTTGTGTCGGACTGCCTGTGACGCCGACATCTCATTTG
GTGGGCGGCCGGTCGCGTTTGCACGAACCGGTGATGGAACCAAACATTTT
GGAATGTTTGGAATGTGTCGGTTCGATTGCGAACACCCAATTATCAATAG
GGGCGTGGAGGGAATCTGCAGCGGGGCGGGACGCGGTGCTCTTGATTGGG
AACTGTTCCGGTTGGTGGGGGTTGCCGTCATACGAAGTATACGGATTATG
TAGAATTTGGTGGGCTGGTGAGCTCTACCGGCTTGTTGTTGGATTGCAGG
CATAGTCCATGGATGGAATGCTAAATGAACACGGCATCACCGAGCAATTT
GTGCTGCGGCATTCTTCGCCCTCTATATTTGAAGCTGAGATCAAAGTTAA
CATTGAGGCGTGTTTGGTTTTGCCGCGGCGGGTTGCTGGTAATGGTACTG
CTGTACCATGGAAAAAATTGCTCTTGTTGCCGTCTAGCGACAGCTGGTTT
GTGTTAAAACCCGGAC
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Coding sequence (CDS) from alignment at C-linearis_contig91:250378..252543+

>mRNA_C-linearis_contig91.16814.1 ID=mRNA_C-linearis_contig91.16814.1|Name=mRNA_C-linearis_contig91.16814.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at C-linearis_contig91:250378..252543+ (Chordaria linearis ClinC8C monoicous)
ATGCCGTGGGCGACCCGACGCAGGTACCGTTGGTTTTCGCACGTTTCGCA
GAGCTTGGTACGCGTGCTACTTGACGCAGCAGCGGGGCGGCGGGTGGGAA
AGTTCTGGGGAACGGAAGCGCATTCCTACGCCACCGTCGTGGCCGCCGGC
GACGGACGCGCGAAGATCGTCAAGATGCTCGTCACGGCCGAGGGCGCAGG
CCGGCAGCAGCACTGGGCGAGAGTCCGCCTGAGCGACATACCGGCACTCT
TTTCCGCGGCCAACCGGGGCTCCGTCTCGACCGTCGCCATCCTCCTCGCC
GCCGGCGCGGACGAACTCGCCCGCGACAACGACGGCTATCGCGCGAGGGA
TTTCGCGGGAATGGGACTCCCGGCGAACGACAGCAAGACGCCCGCCGTCA
AGCGTACGTTGCAGCGGGCGCCTGCTCACCGGGCCCTTTCTTGGACGTGG
TCCACCGCCTTGTGTTCTAAAGGCGGCGGTGCTGCCGCCGGGGGGCTTTG
TGAGTCGAGTCCGGCCCCAGTAGGTGTCCGCATTCTTCCGGCCGAGGGCC
CCGCTTTTCATCACGGCCCGGTTTAGATGCCGTGGGCGACCCGACGCAGG
TACCGTTGGTTTTCGCACGTTTCGCAGAGCTTGGTACGCGTGCTACTTGA
CGCAGCAGCGGGGCGGCGGGTGGGAAAGTTCTGGGGAACGGAAGCGCATT
CCTACGCCACCGTCGTGGCCGCCGGCGACGGACGCGCGAAGATCGTCAAG
ATGCTCGTCACGGCCGAGGGCGCAGGCCGGCAGCAGCACTGGGCGAGAGT
CCGCCTGAGCGACATACCGGCACTCTTTTCCGCGGCCAACCGGGGCTCCG
TCTCGACCGTCGCCATCCTCCTCGCCGCCGGCGCGGACGAACTCGCCCGC
GACAACGACGGCTATCGCGCGAGGGATTTCGCGGGAATGGGACTCCCGGC
GAACGACAGCAAGACGCCCGCCGTCAAGCGTACGTTGCAGCGGGCGCCTG
CTCACCGGGCCCTTTCTTGGACGTGGTCCACCGCCTTGTGTTCTAAAGGC
GGCGGTGCTGCCGCCGGGGGGCTTTGTGAGTCGAGTCCGGCCCCAGTAGG
TGTCCGCATTCTTCCGGCCGAGGGCCCCGCTTTTCATCACGGCCCGGTTT
AG
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