mRNA_C-linearis_contig91.16806.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig91.16806.1
Unique NamemRNA_C-linearis_contig91.16806.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig91.16806.1 vs. uniprot
Match: A0A6H5K7D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7D0_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 4.550e-10
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 MFVLINELPVYRFLLLLTSPGRLLSGFQLQVLDAALP 111
            MFVLINELPVYRFLLLLTSP RLLSGFQLQVLDAALP
Sbjct:  270 MFVLINELPVYRFLLLLTSPERLLSGFQLQVLDAALP 306
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig91.16806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7D0_9PHAE4.550e-1097.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig91contigC-linearis_contig91:185461..189702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size627
Cds size627
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig91.16806.1prot_C-linearis_contig91.16806.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig91 185461..189702 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930782.0793493-CDS-C-linearis_contig91:185460..1857821622930782.0793493-CDS-C-linearis_contig91:185460..185782Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 185461..185782 -
1690881247.2629879-CDS-C-linearis_contig91:185460..1857821690881247.2629879-CDS-C-linearis_contig91:185460..185782Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 185461..185782 -
1622930782.1014743-CDS-C-linearis_contig91:188012..1880521622930782.1014743-CDS-C-linearis_contig91:188012..188052Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 188013..188052 -
1690881247.273339-CDS-C-linearis_contig91:188012..1880521690881247.273339-CDS-C-linearis_contig91:188012..188052Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 188013..188052 -
1622930782.1159544-CDS-C-linearis_contig91:188688..1888631622930782.1159544-CDS-C-linearis_contig91:188688..188863Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 188689..188863 -
1690881247.2824292-CDS-C-linearis_contig91:188688..1888631690881247.2824292-CDS-C-linearis_contig91:188688..188863Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 188689..188863 -
1622930782.1301963-CDS-C-linearis_contig91:189612..1897021622930782.1301963-CDS-C-linearis_contig91:189612..189702Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 189613..189702 -
1690881247.2913015-CDS-C-linearis_contig91:189612..1897021690881247.2913015-CDS-C-linearis_contig91:189612..189702Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 189613..189702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig91.16806.1

>prot_C-linearis_contig91.16806.1 ID=prot_C-linearis_contig91.16806.1|Name=mRNA_C-linearis_contig91.16806.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=209bp
MFVLINELPVYRFLLLLTSPGRLLSGFQLQVLDAALPSSAPTAASAAAAA
AAAGVRQRGGGGGGGSSSRLHDTSAGRGGDGGAVGPGQWEGGTNMVYFQL
QRCRAPASALFQPYADRARRAARRYPPAAIAKSLISGKPLPDLGFRDFVT
VRGAAASGRGGRGGDWSGEDGKGAVDGDWAAGVGGGGGRGAELVRVCRSL
WLEYCYGC*
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mRNA from alignment at C-linearis_contig91:185461..189702-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig91.16806.1 ID=mRNA_C-linearis_contig91.16806.1|Name=mRNA_C-linearis_contig91.16806.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4242bp|location=Sequence derived from alignment at C-linearis_contig91:185461..189702- (Chordaria linearis ClinC8C monoicous)
ATGTTCGTCCTGATCAACGAGCTCCCGGTCTACCGGTTCCTGCTGCTGCT
CACCAGCCCCGGGAGGCTTCTGTCAGGTTTTCAGCTTCAGGTGCGTCACC
CCAAATGTTTTTTTCCCCTATATTTTTTGTGTTTTTTTTGGGAGAGAAAG
ACGAAACGATCCGCCCCCCCCCCCCCTCCGAAAAATAAGTAGCCAGAGGG
GACACACAACCTCCCACTTCTCTATGGATCGTTCTGTGGATCGTTCCGTA
CTTTCCCTTTCGCCCGGTGTTGAAGTTGGACAGCGGGGGGGGTGGCACAT
AGTTCGTGGAAATTGTGTTGGTTCCGGGACAGGTTCTGGCATGGCATAGT
TGTAGAGCGAATCTATGCACCGCGATGTGCGAGTTACTTGACGCTGCCGG
TTGAACCAACCCTACGAAAGCAGCTATTGACGATAGTTGGAACGCTCTGA
CCCAACCCACCCACGAACCCACCCACCGCCACCCGCCCAACCAACCCAAA
CCAAACCAACCCGGGCCCCATTATTTATCCAAACCAGAACCAGCAAAGCG
CCTGCTTGATTGAATCGAAAGAAGCTTAAATAGAAGGAATGAAGCTTGCT
TGAAAAAAAGAAGAAGCCTAAAGAAGCTTGAGCATATACTCAGAAGTAGT
ATAATTGGTTTGAAGATCGTTTCGGAAGGATCTAAGTATATACATAGGGG
CGCGCGAGCGCGGTGCAATCTAAATGATCACGTCCGCAGCAAGGTCTAAA
ACGCTTGTGCTTCCGTATTCCTGGTCCTAACCGAAACCGCGCTCCTAACC
TCCAAAACACCCCTAACCCTACGCCCACCACATACCCAGGTGCTGGACGC
AGCGCTTCCGTCCTCTGCTCCTACCGCTGCTTCTGCTGCAGCAGCAGCAG
CTGCTGCTGGCGTGCGGCAGCGCGGCGGCGGCGGCGGCGGCGGTTCTTCC
TCCCGCCTGCACGACACAAGCGCAGGGAGAGGGGGCGACGGTGGCGCTGT
CGGGCCCGGCCAATGTACGTCCTTCCTCCACGTCACTAGCCGTGTGCCCC
CCCCCCGCTCATATTTTGTGGAATAAATTAGGACGGGACGTCAAAGACAG
CAGTACCTCCCCGCGTTCGAGACGGGGCTCCGTCGTTGGATTATGGCGGT
TTTCCATCCCTGCAATGACATCTTATTATTGTGCCCGGCCGTAGAAAATA
TCGCAGTATAACGAGGGGATTTGCCGAACCGCTTCGACTCAACCGCTGCC
GGCCGGGTCAGCCATGTTTTTGTCAGCTCGCCTGATGTGATCATCTAGCC
CGCCCCGGTGGCGGCCTCGTCGCGGGAGAGTGGAGCTGGTAGGGTAATGC
TTTCGAGCAATCAACCACTGGCCGTGCGTGTGCATGATACTATACCACCC
GGAACACTCAGGAACGCATACTCTCTCTGTGTAATATATATACAACATAT
CCACTGAGCTAAACAGTCAGCGCTGACTACAGGGATTACAACCCTGGGGG
GAAAACCGGAGCCCAACAGCCTAACCAGCTGTCGGACCACCCCCGGTTGT
ACTTTTGTCAGATACATTTACAACATGTCCACGAGCTAAGTGAAGACACT
CTGCCTGATGTCTTGCTATTTTTGTCTTTTGTCTTTCTCTGTTGCATCAG
GGGAAGGCGGAACAAACATGGTGTACTTCCAGCTTCAGAGGTGAGCGTAA
CAAGGAGTAAAGAGCAAGCAGGATGCATAGAAGCGGTGCTATGTGTTTTA
TTTTATGACTCTGTATTTCGAAGACTACACTTCAGCCGGTCGCCCCGGTG
GACTAGTGGTTTAACCTCGAACCCACTATATAGCAGCAAAGTCTGGAGTT
CAATTCCAAGCAAAGGTGATTATTTTGCGACTTTGCCGGTGAAAGCGATA
ACATAGCTGAAAAAGCTCGTGAGTACCAAACTTCGACTTCGCACGTTGAC
GAGGGAAAGGGATGGCTGCACCCTTCTCGCGATAAAATCCAAGGCAAGCA
CCGCAGGAGGAAGGTGGGGCAAAAAAGAAACAGAAAAAGAAGAAAAAAGT
CCCAGTGTTTACCCCCTCCTGTGTGACCCCGGTTGGTTCTAGTTGAACAG
AAAAATACACTGAACAAGTGTCGGACTCTAAATACACCGCAAGGTGTAGT
ACACGTCTCGCCTTGATCGGAAAGGGACTGTCGCCAAAATAAATGGGACG
AAAACACACACACACACACACACACACACACACACTAGCTTCTTCCCCTC
GCTGCCTTGGCAATGCTTTTGCTTAGGCATGGCCCATAGCGAGGGGGGGG
TCTTTCTAGCAAGCAAGGCTAGATTCACCCTCAAGCGGACCGATACCTTC
TTGCTGCTGCACACCCGCCGCAAGGCGTGCGCAGCGGTGGAGTTGGGTCG
GCACTGGTGCGTCAGGCACAAAAGTTCGGATGCACGGGTCTTTATGGCCG
TCGGTGTAGGCAGCAATGTCCATCTCATTTTGTGCGCGGAGGCAGACGCC
ACCAGAAAGGTGAAGGACACTACGTACACGGCCCTAGGTGTGCGAGAGGG
AGCTGTACTGTCTCAGTAACCTGGCTTCGCTTCGCCATCAAAGGAGCGGC
GTGGGAGGCGACGAGCTGAAGACTGGGCTGGTTGACCCCTTCGGGGCGAG
AATTTTTCTTTCCCATACCAAGCACCCTAAGTGCAACGAAGGAGAAAGCG
AGGAACCGGCTGGGAAGGACAGCAACTAGAGCGTGTGCGGACGGAGCGGG
CCAAGTGTGGCTGTGCTAGGACCGGCCACAGCGGCACCGGAGCAGCGGCA
CCGGAGCATGCGGACGACATCGAGCCGTGGGGCACGGACAAACATCGTGT
GCTGGCAATTATTTCGTTTTTTTTTCCCTGAATGTTGGCGTCTGTTTTTG
TGGTGACGTCACTGGTTTTGTAGAGAGACGCGGTAGAGATGGCGCGGATA
CCCCAGGTGCCGTGTGTACCTGCATCGGGGAAGACCCCTTCAATGTGGAA
CGATTCCTAATCAGTGTCGATGCTTACAATACTGTGCCTAACACAGACGT
TCGGGATAGACTCGGGATATTGTCAATTGATGTGATGGCTTTGTTTGGTT
TGCTGTTCTTTTTCACTTTGTATCCGCAGACTGTCATTCTGGCAGCACCT
CAGACAGCAGCTGCGTGCTCCATCATTGTTCCCACGCCTACCGTGTGCTT
TTGTACAGACAGCACTTCAGACAGCAGTTCCGCTGTAGTCGGCAAATTCA
TTGGTAAAGAGTGGGAAGGGAGGGGGGGCGGCGATGCTGCTGTACTCGAA
TGGAGATTGCGGGCACGTAGTTCAGATTTGGACACGCATAACTTGCTGTA
GGTATTTAAGGTGTACCTCTGCGGGCTTGTGTACTCTTTCCCTGCTAAAA
GTGTGCGTGTTCTTCAGGATTCTCTTATGGCTCTAGCACTTTTGTGCTTT
TGTGACCACGGGCTGTGATCTTGCTAGATTTTAGGGATTAGCAACTGAAA
CGAGTTTAATGTGAAGATAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAAAATAACGCTCTTCTTGTCGTTCGGCGTCGCCTCTC
AGCGCATCATCACACCTCCCCCCGAGAAAGAAAATGCCCCGAGTTCGCTC
CGTCGGCGCCTAAGAGCAGTGAACCCCCCGCAAAAATCGAAAGCTTCAAG
TGGCTCCTAAAAAGTAGCGAGTTCTTCCATAGATTGGGTTGAAATGGGAC
GCGTAGCTAAACGCCCATAAAACCCAAGTTGTCAGGACGGTCGCGCCACC
CACCCCAACCCTAACCCTAACCCTAACCCCAATCCTAACCCGCAACCCTC
CTGCCCTCCCTCGCTCCCCCCCTCGCTCCCCTCAACAAAATAACAACAAC
AACCACACAAAAAAAAAAAGGTGTCGAGCCCCAGCGTCCGCCCTGTTCCA
GCCCTACGCCGACCGCGCCCGCCGCGCCGCCCGCCGCTACCCCCCGGCGG
CGATCGCGAAAAGCCTCATCTCGGGGAAACCCTTACCGGACTTAGGCTTT
AGGGACTTTGTGACGGTGCGTGGTGCTGCCGCATCGGGACGGGGGGGGCG
CGGTGGTGACTGGAGCGGGGAAGATGGAAAGGGCGCCGTGGATGGAGATT
GGGCGGCGGGCGTGGGTGGGGGTGGGGGCCGGGGGGCGGAGTTGGTACGT
GTATGTCGATCCCTCTGGCTCGAGTACTGCTACGGGTGTTGA
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Coding sequence (CDS) from alignment at C-linearis_contig91:185461..189702-

>mRNA_C-linearis_contig91.16806.1 ID=mRNA_C-linearis_contig91.16806.1|Name=mRNA_C-linearis_contig91.16806.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1254bp|location=Sequence derived from alignment at C-linearis_contig91:185461..189702- (Chordaria linearis ClinC8C monoicous)
ATGTTCGTCCTGATCAACGAGCTCCCGGTCTACCGGTTCCTGCTGCTGCT
CACCAGCCCCGGGAGGCTTCTGTCAGGTTTTCAGCTTCAGATGTTCGTCC
TGATCAACGAGCTCCCGGTCTACCGGTTCCTGCTGCTGCTCACCAGCCCC
GGGAGGCTTCTGTCAGGTTTTCAGCTTCAGGTGCTGGACGCAGCGCTTCC
GTCCTCTGCTCCTACCGCTGCTTCTGCTGCAGCAGCAGCAGCTGCTGCTG
GCGTGCGGCAGCGCGGCGGCGGCGGCGGCGGCGGTTCTTCCTCCCGCCTG
CACGACACAAGCGCAGGGAGAGGGGGCGACGGTGGCGCTGTCGGGCCCGG
CCAATGTGCTGGACGCAGCGCTTCCGTCCTCTGCTCCTACCGCTGCTTCT
GCTGCAGCAGCAGCAGCTGCTGCTGGCGTGCGGCAGCGCGGCGGCGGCGG
CGGCGGCGGTTCTTCCTCCCGCCTGCACGACACAAGCGCAGGGAGAGGGG
GCGACGGTGGCGCTGTCGGGCCCGGCCAATGGGAAGGCGGAACAAACATG
GTGTACTTCCAGCTTCAGAGGGGAAGGCGGAACAAACATGGTGTACTTCC
AGCTTCAGAGGTGTCGAGCCCCAGCGTCCGCCCTGTTCCAGCCCTACGCC
GACCGCGCCCGCCGCGCCGCCCGCCGCTACCCCCCGGCGGCGATCGCGAA
AAGCCTCATCTCGGGGAAACCCTTACCGGACTTAGGCTTTAGGGACTTTG
TGACGGTGCGTGGTGCTGCCGCATCGGGACGGGGGGGGCGCGGTGGTGAC
TGGAGCGGGGAAGATGGAAAGGGCGCCGTGGATGGAGATTGGGCGGCGGG
CGTGGGTGGGGGTGGGGGCCGGGGGGCGGAGTTGGTACGTGTATGTCGAT
CCCTCTGGCTCGAGTACTGCTACGGGTGTTGAGTGTCGAGCCCCAGCGTC
CGCCCTGTTCCAGCCCTACGCCGACCGCGCCCGCCGCGCCGCCCGCCGCT
ACCCCCCGGCGGCGATCGCGAAAAGCCTCATCTCGGGGAAACCCTTACCG
GACTTAGGCTTTAGGGACTTTGTGACGGTGCGTGGTGCTGCCGCATCGGG
ACGGGGGGGGCGCGGTGGTGACTGGAGCGGGGAAGATGGAAAGGGCGCCG
TGGATGGAGATTGGGCGGCGGGCGTGGGTGGGGGTGGGGGCCGGGGGGCG
GAGTTGGTACGTGTATGTCGATCCCTCTGGCTCGAGTACTGCTACGGGTG
TTGA
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