mRNA_C-linearis_contig90.16787.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig90.16787.1
Unique NamemRNA_C-linearis_contig90.16787.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig90.16787.1 vs. uniprot
Match: D7FMS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS8_ECTSI)

HSP 1 Score: 353 bits (907), Expect = 2.070e-118
Identity = 214/298 (71.81%), Postives = 240/298 (80.54%), Query Frame = 1
Query:    1 MDSGSRECRDENSSRASSAGRRRATREMFLCSTATVRSRRHESDDDFLARVTHLRLHNKGISTLNNANVFEACPSLKVLYLYDNCVESLKGLERLQQMEQLYVDNNLLATVQGTLPXXXXXXXXXXXXXXXXLSGLEFAVCLEELHVAKQRLPRGQRFAIDQASINGIKDSLVVLDASGNGMGGMEIEPVLDLYRLETLNLADNDIEEMAQVVDLVGSLEMLRNIDLRGNAVSRMAKYFERAVTRCGDNLATLDGKPVLSQHRLMLQRLDRHKRAEARKSASKTLSSSTAHAPMAEPG 894
            MDS + E  DE+SSRASSA RR  TRE+ LCSTAT      ESDDD+L+RVTHLRL NKGIS+L+N +VF+AC SLKVLYLYDNCVESLKGLE+LQ++EQL+ DN           XXXXXXXXXXXXXXXX              VA+QRL RGQ F IDQASI+GIKDSLV+LDASGNGMGG EIE +L LYRLETLNLA+NDI+EMAQVVDLV SLE LR++DLRGN VSRMAKYFERAVTRCGD LATLDGKPV +QHR MLQRLDRHKR+EARKSA+KTL+ S  HAP+AEPG
Sbjct:    1 MDSITGEFSDESSSRASSASRRGTTRELALCSTATXXXX-XESDDDYLSRVTHLRLQNKGISSLDNPDVFDACHSLKVLYLYDNCVESLKGLEKLQRIEQLFADNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARQRLQRGQCFTIDQASIDGIKDSLVLLDASGNGMGGTEIEGILHLYRLETLNLAENDIQEMAQVVDLVSSLEALRDLDLRGNIVSRMAKYFERAVTRCGDLLATLDGKPVHAQHRSMLQRLDRHKRSEARKSAAKTLARSNTHAPIAEPG 297          
BLAST of mRNA_C-linearis_contig90.16787.1 vs. uniprot
Match: A0A830I3L4_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830I3L4_9CHLO)

HSP 1 Score: 99.8 bits (247), Expect = 6.180e-20
Identity = 83/236 (35.17%), Postives = 124/236 (52.54%), Query Frame = 1
Query:  124 ESDDDFLARVTHLRLHNKGISTLNNANVFEACPSLKVLYLYDNCVESL-KGLERLQQMEQLYVDNNLLATVQGTLPXXXXXXXXXXXXXXXXL-SGLEFAVCLEELHVAKQR---LPRGQRFAIDQASINGIKDSLVVLDASGNGMGGMEIEPVLDLYRLETLNLADNDIEEMAQVVDLVGSLEMLRNIDLRGNAVSR----MAKYFERAVTRCGDNLATLDGKPVLSQHRLMLQR 804
            E +  FLARVTHL L  +G+  L+  ++ + CP ++VLYLYDN +ES+   L   + +  L               XXXXXXXXXXX     + SGLE   CLEEL V  QR   +P  +  A +  ++ G+  SL +L  +G+ +  ++++P+  L  LE L+LA N + +  ++   V ++  LR +D  GN   R    +  Y    V   G +L TL+GK VL   R+  QR
Sbjct:  230 EDEQAFLARVTHLPLQERGLQDLH-PHLSKICPQMRVLYLYDNIIESIGTSLAFAKHITHLXXXXXXXXXXXXXXXXXXXXXXXXXXRNKLAVVSGLENCACLEELSVEHQRREGMPEQRTLAFEPRAMEGVGGSLRILKCTGSNV--VDVQPLAALRSLEELSLASNHVADHEELAMAVSNMPRLRTLDATGNPCCRSPSALRVYRNAIVAASGPSLGTLNGKRVLPNERMFAQR 462          
BLAST of mRNA_C-linearis_contig90.16787.1 vs. uniprot
Match: UPI001E1CF726 (uncharacterized protein LOC123514193 n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1CF726)

HSP 1 Score: 99.0 bits (245), Expect = 1.260e-19
Identity = 93/253 (36.76%), Postives = 131/253 (51.78%), Query Frame = 1
Query:  133 DDFLARVTHLRLHNKGISTLNNANVFEACPSLKVLYLYDNCVESLKGLERLQQMEQLYVDNNLLATVQGTLPXXXXXXXXXXXXXXXXLSGLEFAVCLEELHVAKQRLPRGQRFAIDQASINGIKDSLVVLDASGNGMGGMEIEPVLDLYRLETLNLADNDIEEMAQVVDLVGSLEMLRNIDLRGNAVSRMAKYFERAVTRCGDNLATLDGKPVLSQHRLMLQRLDRHKRAEARKSASKTLSSSTAHAPMAEP 891
            D++LARVTHL L NKGI+ L +     AC    V YL  N +  L  L  L+ + +L               XXXXXXXXXXXXXXXX   L     L ELHV  QRLP G    +D  ++  ++D+L VLD  GN +   E+  V  L RL+ L  ADND+  ++ +  ++G L  L+++ L GN V+   +Y    +      L TLD KPV ++ R  L + DR++ A    S     + ST+ + +  P
Sbjct:   91 DNYLARVTHLHLQNKGITHLEDV---AACGGALVAYLQHNHLTRLTNLRYLRHLRELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPRG--LTELHVQDQRLPPGDALILDPHALAVVQDTLRVLDVRGNRL--TEMGAVGLLGRLQVLRAADNDLSSLSHLGTVLGRLAHLKHLHLIGNPVTAHRRYRPAVILAASPTLETLDDKPVTARSRDFLVQADRYRAARRETSQQPPAAPSTSGSKVPAP 336          
BLAST of mRNA_C-linearis_contig90.16787.1 vs. uniprot
Match: A0A2D4BJ87_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJ87_PYTIN)

HSP 1 Score: 97.4 bits (241), Expect = 1.490e-19
Identity = 92/256 (35.94%), Postives = 133/256 (51.95%), Query Frame = 1
Query:  139 FLARVTHLRLHNKGISTLNNANVFEACPSLKVLYLYDNCVESLKGLERLQQMEQLYVDNNLLATVQGTLPXXXXXXXXXXXXXXXXLSGLEFAVCLEELHVAKQRLPRGQRFAIDQASINGIKDSLVVLDASGNGMGGMEIEPV--LDLYR-LETLNLADNDIEEMAQVVDLVGSLEMLRNIDLRGNAVSRMAKYFERAVTRCGDNLATLDGKPVLSQHRLMLQRLDRHK----RAEARKSASKTLSSSTAHAPMA 885
            +L R+THL L+      +     F  CP+LKVLYLYDN +E+++GL+R++Q+  L++ NN          XXXXXXXXXXXXXXXX                 QRL     F+ + +SI  +  SL VL+     +    +E V  L+L R L+ L+L+ N    +  V  LVGSL +L ++DL  N V+   KY E+ +T     LA LD + + +  R M+Q    HK    + + + S  +   SST  AP A
Sbjct:   44 YLKRITHLTLNGNDKKVVKRMQNFHYCPNLKVLYLYDNEIEAIEGLDRVRQLTHLHLQNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRLSPSSTFSFEPSSIQALCRSLRVLN-----LANCRVESVRALELLRGLQVLDLSKNLFASLEDVFSLVGSLSVLVDLDLTLNPVTTQPKYREKVITFSSPRLALLDKRDIDANQRRMMQSHMAHKFRKRQEQEQASNQEPALSSTLQAPSA 294          
BLAST of mRNA_C-linearis_contig90.16787.1 vs. uniprot
Match: A0A7S3HM97_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HM97_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 8.160e-17
Identity = 80/247 (32.39%), Postives = 115/247 (46.56%), Query Frame = 1
Query:   82 MFLCSTATVRSRRHESDDDFLARVTHLRLHNKGISTLNNANVFEACPSLKVLYLYDNCVESLKGLERLQQMEQLYVDNNLLATVQGTLPXXXXXXXXXXXXXXXXLSGLEFAVCLEELHVAKQRLPRGQRFAIDQASINGIKDSLVVLDASGNGMGGMEIEPVLDLYRLETLNLADNDIEEMAQVVDLVGSLEMLRNIDLRGNAVSRMAKYFERAVTRCGDNLATLDGKPVLSQHRLMLQRLDRHKR 822
            M L ST+  RS + E+ D +L RVTHL L NK I  + +    + C +LKVLY                                  LP      XXXXXXXX  +SGL   V LEELH+A+QRLP       ++ S++ I  +L  L+ SGNG+    + P   LY L  L   DN + ++A+V +++ SL  L   + +GN      KY + A+    D    LD   V    ++ ++ L  H+R
Sbjct:    1 MVLASTSLTRSSK-ETADAYLQRVTHLHLQNKKIRVIES---LDQCTNLKVLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPN-LPMPSLKKXXXXXXXXQTVSGLSACVHLEELHIARQRLPTYASLHFERDSLSAISRTLQTLEISGNGIS--VLAPFSGLYNLRKLYCQDNKVIDLAEV-EMIVSLPRLEEANFKGNPCCTQFKYRDTAIGASSDAFQILDEVAVPKHQQVAIRGLMAHRR 239          
BLAST of mRNA_C-linearis_contig90.16787.1 vs. uniprot
Match: A0A7S2D0Q8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D0Q8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 7.850e-16
Identity = 76/234 (32.48%), Postives = 117/234 (50.00%), Query Frame = 1
Query:  109 RSRRHESDDDFLARVTHLRLHNKGISTLNNANVFEACPSLKVLYLYDNCVESLKGLERLQQMEQLYVDNNLLATVQGTLPXXXXXXXXXXXXXXXXLSGLEFAVCLEELHVAKQRLPR-GQRFAIDQASINGIKDSLVVLDASGNGMGGMEIEPVLDLYRLETLNLADNDIEEMAQVVDLVGSLEMLRNIDLRGNAVSRMAKYFERAVTRCGDNLATLDGKPVLSQHRLMLQRL 807
            + R  E DD+   RVTHL+L NK I    + +   A  +LKVLYL +NC+E + GL+ L      Y+ +N ++ ++   P    XXXXXXXXXXXX     +   L+EL +A QR    G+R  +        + +L VL+ SGN +  ++   +     L+ L++  NDI  + Q  ++V   + L  +D  G  + R   Y    +      L+ LDGKP+   HR  L  +
Sbjct:    4 KKRSAEKDDELFLRVTHLQLMNKRIGP--SISGLLAVENLKVLYLQENCIERISGLDHLTXXXXXYLQHNNISVIENVPPSLSKXXXXXXXXXXXXXXXXXYK--LKELSLASQRREHLGERLLLMPECFKSFEHALSVLNLSGNAL--VDTTEMSGFKALKKLHMGRNDIS-IGQAKNMVSQFKTLEELDFSGCDMCRERTYLRSIIEVSSKLLSKLDGKPIQPFHRKQLMNI 230          
BLAST of mRNA_C-linearis_contig90.16787.1 vs. uniprot
Match: A0A8K1CMN9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMN9_PYTOL)

HSP 1 Score: 85.9 bits (211), Expect = 1.930e-15
Identity = 81/237 (34.18%), Postives = 118/237 (49.79%), Query Frame = 1
Query:  133 DDFLARVTHLRLHNKGISTLNNANVFEACPSLKVLYLYDNCVESLKGLERLQQMEQLYVDNNLLATVQGTLPXXXXXXXXXXXXXXXXLSGLEFAVCLEELHVAKQRLPRGQRFAIDQASINGIKDSLVVLDASGNGMGGMEIEPVLDLYRLETLNLADNDIEEMAQVVDLVGSLEMLRNIDLRGNAVSRMAKYFERAVTRCGDNLATLDGKPVLSQHRLMLQRLDRHKRAEARKSA 843
            + +L RVTHL L+      +      + CP+LKVLYLYDN ++ L+GL+ + Q+                  XXXXXXXXXXXXXXXX                   L     F+ ++ +I  +  SL VL+ S   +   +   +L L  L+ L+L+ N IEE+  V  L+G L  L  +DLR N V+ + KY E+A+T     LA LD K +    R M+Q    HK  + +++A
Sbjct:   38 EHYLKRVTHLTLNGSEKKVIKRIQHLQRCPNLKVLYLYDNEIQVLEGLDGVSQLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPSTVFSFEEETIRALSRSLRVLNLSNCHITATQ--SLLGLRALQQLDLSKNLIEELEDVFALLGGLYSLTELDLRSNPVTNIPKYREKAITFSSPRLALLDKKDIDMNQRRMMQSHLAHKHKKRQEAA 272          
BLAST of mRNA_C-linearis_contig90.16787.1 vs. uniprot
Match: A0A225VT80_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VT80_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.150e-15
Identity = 91/259 (35.14%), Postives = 121/259 (46.72%), Query Frame = 1
Query:  118 RHESDDDFLARVTHLRLHNKGISTLNNANV---------FEACPSLKVLYLYDNCVESLKGLERLQQMEQLYVDNNLLATVQGTLPXXXXXXXXXXXXXXXXLSGLEFAVCLEELHVAKQRLPRGQRFAIDQASINGIKDSLVVLDASGNGMGGMEIEPVLDLYRLETLNLADNDIEEMAQVVDLVGSLEMLRNIDLRGNAVSRMAKYFERAVTRCGDNLATLDGKPVLSQHRLMLQRLDRHKRAEARKSASKTLSSST 867
            RHE    +  RVTHL L+     TL  ++             CP+LKVLYLYDN VE++                           XXXXXXXXXXXXXXXX               A Q +P    F+ ++ S+  + DSL VLD S   M  +  + V  L  LE L L+ N I ++ ++  LVG +  L  +DLRGN V+  AKY E+ +T     LA LD K V    R M+Q    HK     +S+S+  S S+
Sbjct:   32 RHEQLSHYFKRVTHLALNGDASKTLKGSDKKGVIRKIKNLHHCPNLKVLYLYDNEVETIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANQNIPVDLHFSFEEDSMRTLADSLRVLDLSNCCM--VSTKSVTLLRSLEHLYLSKNLITDLEEIFALVGGITSLVELDLRGNPVTATAKYREQTITFSSARLALLDKKGVDPNQRRMMQTHLAHKYRNRLESSSRRQSPSS 288          
BLAST of mRNA_C-linearis_contig90.16787.1 vs. uniprot
Match: UPI001E1D2461 (protein phosphatase 1 regulatory subunit 42-like isoform X11 n=3 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D2461)

HSP 1 Score: 81.6 bits (200), Expect = 7.330e-14
Identity = 80/246 (32.52%), Postives = 115/246 (46.75%), Query Frame = 1
Query:  106 VRSRRHESDDDFLARVTHLRLHNKGISTLNNANVFEACPSLKVLYLYDNCVESLKGLERLQQMEQLYVDNNLLATVQGTLPXXXXXXXXXXXXXXXXLSGLEFAVCLEELHVAKQRLPRGQRFAIDQASINGIKDSLVVLDASGNGMGGMEIEPVLDLYRLETLNLADNDIEEMAQVVDLVGSLEMLRNIDLRGNAVSRMAKYFERAVTRCGDNLATLDGKPVLSQHRLMLQRLDRHKRAEARKSA 843
             + +R E+   +L R+THL L NKGI  + +      C +L VLYLYDN +  +  L + Q +                  XXXXXXXXXXXXXXXX                 Q LP G++   D  SI  I  SL VL+ SGN +    I+ +  L +L      DN + +M ++  ++G    L  +DL GN +   AKY +R +      L TLDGK +    +  L+    +K  + +K A
Sbjct:   41 TKKKRDETMHQYLKRLTHLYLENKGIDEVGDD--MSLCRNLSVLYLYDNQLTHIPSLHQNQHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENQALPPGEKLLFDPRSIRAISGSLKVLNVSGNNLDS--IKDLECLNQLSHFLAIDNQLNDMKELAHVLGQWYYLNRLDLMGNPLCHKAKYRDRVIVMA-KQLDTLDGKQISETAKQFLKNWHANKETQRQKRA 281          
BLAST of mRNA_C-linearis_contig90.16787.1 vs. uniprot
Match: UPI001E1D4F86 (protein phosphatase 1 regulatory subunit 42-like isoform X1 n=16 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D4F86)

HSP 1 Score: 81.6 bits (200), Expect = 9.400e-14
Identity = 80/246 (32.52%), Postives = 115/246 (46.75%), Query Frame = 1
Query:  106 VRSRRHESDDDFLARVTHLRLHNKGISTLNNANVFEACPSLKVLYLYDNCVESLKGLERLQQMEQLYVDNNLLATVQGTLPXXXXXXXXXXXXXXXXLSGLEFAVCLEELHVAKQRLPRGQRFAIDQASINGIKDSLVVLDASGNGMGGMEIEPVLDLYRLETLNLADNDIEEMAQVVDLVGSLEMLRNIDLRGNAVSRMAKYFERAVTRCGDNLATLDGKPVLSQHRLMLQRLDRHKRAEARKSA 843
             + +R E+   +L R+THL L NKGI  + +      C +L VLYLYDN +  +  L + Q +                  XXXXXXXXXXXXXXXX                 Q LP G++   D  SI  I  SL VL+ SGN +    I+ +  L +L      DN + +M ++  ++G    L  +DL GN +   AKY +R +      L TLDGK +    +  L+    +K  + +K A
Sbjct:   41 TKKKRDETMHQYLKRLTHLYLENKGIDEVGDD--MSLCRNLSVLYLYDNQLTHIPSLHQNQHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENQALPPGEKLLFDPRSIRAISGSLKVLNVSGNNLDS--IKDLECLNQLSHFLAIDNQLNDMKELAHVLGQWYYLNRLDLMGNPLCHKAKYRDRVIVMA-KQLDTLDGKQISETAKQFLKNWHANKETQRQKRA 281          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig90.16787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMS8_ECTSI2.070e-11871.81Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A830I3L4_9CHLO6.180e-2035.17Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
UPI001E1CF7261.260e-1936.76uncharacterized protein LOC123514193 n=1 Tax=Portu... [more]
A0A2D4BJ87_PYTIN1.490e-1935.94Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S3HM97_9STRA8.160e-1732.39Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2D0Q8_9STRA7.850e-1632.48Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8K1CMN9_PYTOL1.930e-1534.18Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A225VT80_9STRA5.150e-1535.14Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
UPI001E1D24617.330e-1432.52protein phosphatase 1 regulatory subunit 42-like i... [more]
UPI001E1D4F869.400e-1432.52protein phosphatase 1 regulatory subunit 42-like i... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig90contigC-linearis_contig90:597765..601607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score355.9
Seed ortholog evalue1.8e-95
Seed eggNOG ortholog2880.D7FMS8
KEGG koko:K17579
Hectar predicted targeting categoryother localisation
EggNOG OGs2CZ6V@1,2S8SX@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-21_000290.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko04812
Exons7
Model size897
Cds size897
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930777.2597253-CDS-C-linearis_contig90:597764..5979271622930777.2597253-CDS-C-linearis_contig90:597764..597927Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 597765..597927 -
1690881244.8315957-CDS-C-linearis_contig90:597764..5979271690881244.8315957-CDS-C-linearis_contig90:597764..597927Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 597765..597927 -
1622930777.279449-CDS-C-linearis_contig90:598206..5983071622930777.279449-CDS-C-linearis_contig90:598206..598307Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 598207..598307 -
1690881244.843522-CDS-C-linearis_contig90:598206..5983071690881244.843522-CDS-C-linearis_contig90:598206..598307Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 598207..598307 -
1622930777.2978618-CDS-C-linearis_contig90:598715..5988411622930777.2978618-CDS-C-linearis_contig90:598715..598841Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 598716..598841 -
1690881244.8535998-CDS-C-linearis_contig90:598715..5988411690881244.8535998-CDS-C-linearis_contig90:598715..598841Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 598716..598841 -
1622930777.3186991-CDS-C-linearis_contig90:599291..5994301622930777.3186991-CDS-C-linearis_contig90:599291..599430Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 599292..599430 -
1690881244.8650482-CDS-C-linearis_contig90:599291..5994301690881244.8650482-CDS-C-linearis_contig90:599291..599430Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 599292..599430 -
1622930777.332943-CDS-C-linearis_contig90:599620..5997571622930777.332943-CDS-C-linearis_contig90:599620..599757Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 599621..599757 -
1690881244.8780985-CDS-C-linearis_contig90:599620..5997571690881244.8780985-CDS-C-linearis_contig90:599620..599757Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 599621..599757 -
1622930777.3503425-CDS-C-linearis_contig90:600295..6004131622930777.3503425-CDS-C-linearis_contig90:600295..600413Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 600296..600413 -
1690881244.8882678-CDS-C-linearis_contig90:600295..6004131690881244.8882678-CDS-C-linearis_contig90:600295..600413Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 600296..600413 -
1622930777.38796-CDS-C-linearis_contig90:601494..6016071622930777.38796-CDS-C-linearis_contig90:601494..601607Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 601495..601607 -
1690881244.9023757-CDS-C-linearis_contig90:601494..6016071690881244.9023757-CDS-C-linearis_contig90:601494..601607Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 601495..601607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig90.16787.1prot_C-linearis_contig90.16787.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig90 597765..601607 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig90.16787.1

>prot_C-linearis_contig90.16787.1 ID=prot_C-linearis_contig90.16787.1|Name=mRNA_C-linearis_contig90.16787.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=299bp
MDSGSRECRDENSSRASSAGRRRATREMFLCSTATVRSRRHESDDDFLAR
VTHLRLHNKGISTLNNANVFEACPSLKVLYLYDNCVESLKGLERLQQMEQ
LYVDNNLLATVQGTLPCRRLTKLHLSGNSILMLSGLEFAVCLEELHVAKQ
RLPRGQRFAIDQASINGIKDSLVVLDASGNGMGGMEIEPVLDLYRLETLN
LADNDIEEMAQVVDLVGSLEMLRNIDLRGNAVSRMAKYFERAVTRCGDNL
ATLDGKPVLSQHRLMLQRLDRHKRAEARKSASKTLSSSTAHAPMAEPG*
back to top

mRNA from alignment at C-linearis_contig90:597765..601607-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig90.16787.1 ID=mRNA_C-linearis_contig90.16787.1|Name=mRNA_C-linearis_contig90.16787.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3843bp|location=Sequence derived from alignment at C-linearis_contig90:597765..601607- (Chordaria linearis ClinC8C monoicous)
ATGGACTCCGGCAGTAGGGAATGTCGAGACGAAAACTCGTCGCGTGCTTC CTCTGCTGGTCGGAGACGTGCTACGCGCGAGATGTTCTTGTGCAGTACCG CCACGGTCAGGAGGTAAGCGCACACACACGACGAACCAACGCCTTGCCGT CGATTTACATACTACATACACCCAAACAGAATGTAGGCCCTCGAAAGATG AGGTCTTTGCATGCACGGTCCAGGTGCTGTTCCGCAAAAACCGAGCGTCA ATGACTCAACTGATGACCTCAACTATGATACTCGCTGAAATGTATCTACA ATACGTGGGATAGTCTAATAAGGTTGCGCGGTGTTCCGACAAGTCTACAT GTGTGTGTGTGTGCGTGTGTGTGTGTTTTCGTCCCATTTATTTTGGCGAC AGTCCCTTTCCGATCAAGGCGAGACGTGTACTACACGTTGCGGTGTATTT AGAGTACTACACTTGTTCAGTGTATTTTTCATTTTTCTGTACAACTAGAA CCAACCGGGGTCACACAGGAGGGGGTAAACACTGGGCGGGTTTTTTTTCT TTTTTTTTCTGTTTCTTTTTTGCCCCACCTTCCTCCTGCGGCGGTGCTTG CCTTGGATTTTATCGCGAGAAGGGTGCAGCCATCCCTTTCCCTCGTCAAC GTGCTAAGTCGAAGTTTGGTACTCACGAGCTTTGATATACTCCGTATATC CTAAAGACTCGCGTACATACATACATGTAGAGCAGCAGCAGGCAAAGACA CAGCAGTAAGTAGTCTACAAGCAGGCGTGGAACACTACACAATCTATGTA GTGGAACGCGTGGACTCGAAAGGTCGTTCGTCGCTGGATCGGCTTAAAGT CGGTGTGCGTGCGATAGCATCAACCGTATTCCCTCCTTGTGGTTCGGCTG TCTGTATAAATAAATGCACCCAGCAGGCCCAAAATGTGAATGCGTGCTGA TGAGATGGGTGTGTTGGTGTACATACTTCGTATACTCTTTTCTCAAGTAT CATACATGCATCATGTTCTCCGGCGCGGGCGCTGGCAAGCCCCTAGACTA GACTACGAACGACCGCTCAACGCATGTCAAGAAACACCCTCTCACAGGCC AAAGCATGATGCATGTGACGCATGCATGTACACGGCGAAAGGAGGGGGCC GTCATGAACTCAAGAGAACGCCGCCGTGCACCAATCCGTCGAAGCAGGAG GCACGAGTCGGACGACGACTTTCTTGCCCGCGTCACCCATCTTCGCCTCC ACAACAAGGGTATCTCCACCCTCAATAACGCCAACGTCTTCGAAGCTTGC CCTTCTCTCAAGGTATATATGTATGTATGGTATGTACTCTATGCTGCAGC AACTGTTCGCGACGAGGCCCAACATTCAGATGAGTGAGCACTCGCTCTCT CGTGTACAGAGTCACACAGAGCCCCCGCTGTTGAAGGGTCCCAACTACTG CTGTACATCGTATTGTTCGGCACACCAAGATTACACCAGGCAGCATCCAT TTCCTACTATTATTATTATTGTTGTAGTTCGAGGTTCTTGTTTCGAAGCC CCCGAGGCCCTCCGAATCCTTGCACTTTTAACACTTTGTACCATTTTGAC TGTACCATTTTGACTGGCAGTCTTTGCCGTGAACTGCGGAAGGAAGCGCG TATTTTGAGGGTATGTACGGAGTACTTGGTACTTCGTATGTAGTTTGCGC GTATTGTTTTGCCTTTGCGCTATGCGCGCCCCACTCTGTAATGTAACCAG ATGTTTCTTATGACAGCGTGTACCATTGTTTCAGCTGCATTCCTCCTGTA CGTAAGGACGGTGGCTGATGAGACATGCGTGTATTTTCTCAACCATGTAG GTCCTGTACCTGTACGACAACTGCGTGGAATCCCTAAAGGGTTTGGAAAG GCTGCAACAGATGGAGCAGCTCTACGTCGACAACAACTTGCTGGCGACCG TCCAGGGCACCTTGCCTTGCAGGCGGCTCACGAAACTGTGAGGATAGAAT AGTTTCCATCCTCCAGTCATTCTTGGCGGAATTTTTTCAGAGACGACGCG ATTAAAGCATACAGACGGCCACAAAGTAGGGCCTTTCTCTCTCTAGGCGA GGTGTTGCACCAAGCGAGGGAAGAAACCCATACGGTTGGTCCCGTATTCA ACCGAAATTGTTCCTCCCGTTGACCAGGCACTTAAGCGGGAACAGCATCT TGATGTTGTCTGGGCTTGAGTTTGCGGTCTGCCTGGAAGAACTGCATGTA GCCAAACAGCGACTCCCAAGAGGACAGCGCTTCGCCATCGACCAAGCATC CATCAATGGCATCAAGGTGCTGATGGTCGTTTTTGGCCACTTCGTAGATA TATATATTTATCCAAAATTCAGACATCGGCCCGGGGGTGTCGACCACAGA ATATGGCAAGCGACTTGGGCAGGGGAACTAACTCTGTTGGCATACAGTTT CTTCATCGTACCGGATAACCGATGATACATGCAGTACTGAGAAAGGAAAT AATACGGAGTACTTTTTTCTTGGAATCGGCCGAGCCCTCGTGTTGTTCTC GTCCTTTCCTCCCGGGATGAGATATCATGCAGTAGTGCTCAGTTTTGAAC CATTTACATGTCATGTGCAAAACTCTTACTATGGTCCTCTCGCGTCGCAA GCATCAAACAAACTCCTGACCGATTCACCCGTGATGTTTTTCTTTCCACG GCCGGCCCGGTCCGGCCGCACTCGTTGACTCCATGGTTCTTCTCGTTGGT ATACTTCAATGAATAGGACTCGTTGGTGGTGCTAGATGCCTCGGGAAATG GCATGGGTGGGATGGAAATCGAGCCTGTACTCGACCTGTACCGGCTCGAG ACCCTCAATTTGGCGGACAACGATATTGAGGAAATGGCGCAGGTTCGTCG TAGAATCGACAAAGGGATAATAATGCTGTTTTCCGTGCCTTTCCAAAGGT TCAGAAGGAACGTGTGATTTTGGAGTCCAAGTCCCAACTGCGGGCGAGCT CCTCTCAAGGCTCGCAAGGTTCGAGTCGATACTGTAGCGATGAAACAACT CTGAACGGCTCATGATACTGCTGGAATATAAGGTTCAAAAACGTTGGTGA GGATGAACCAAAAGCAGGTTGTCGAAGGTATGGCCTACCCTACGGTACGA GATGAGACGGCGATGAAGACGCTTCGTCTATTCCCTGAGAACCGACCACA TTCCCTGGCACGCCCGCCTGGGGGCTCATGCGCGCACGTGCCTAGGAAAT GGAGCTGCATGCCGTAACGACCTCCTTTCAAATGCGGTGATCCAAAATAG GTGGTTGACCTGGTGGGCAGCTTGGAGATGCTGAGGAATATTGACCTGAG AGGCAACGCAGTCAGCCGGATGGCGAAATACTTTGAGAGGGCCGTTACCA GGTGGGGTTTTGAAAAAGTTGGTTCGTTCTCAGCATGATACATCATGAGA AGCATGCGGTCGACGCGATCGCCGCCAGATTGAAACACGTTTCAGCGAAG ACCTTCGAAGTATCTACGCAAGGACGGAGTACTGCATGCAGCAAGTGAAG CGTTAGACGAGAGCTTTCCGTTCTTCCTCGTAGCACTTTCAAAGAAACGA CCTTTCCAGACATTCCGTACGACTCGATCAATAAACCTCTCTGCAACGGC TACCAACGTTGTCTTCGGCTCGGCATGAAGGTGTGGGGACAACCTGGCGA CGCTCGACGGCAAGCCGGTTCTTTCGCAACACCGGTTGATGCTACAGCGG CTAGACCGTCATAAGCGGGCAGAGGCAAGGAAATCTGCCTCGAAAACCCT GAGCAGCTCCACCGCCCACGCACCCATGGCAGAACCTGGGTGA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig90:597765..601607-

>mRNA_C-linearis_contig90.16787.1 ID=mRNA_C-linearis_contig90.16787.1|Name=mRNA_C-linearis_contig90.16787.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1794bp|location=Sequence derived from alignment at C-linearis_contig90:597765..601607- (Chordaria linearis ClinC8C monoicous)
ATGGACTCCGGCAGTAGGGAATGTCGAGACGAAAACTCGTCGCGTGCTTC
CTCTGCTGGTCGGAGACGTGCTACGCGCGAGATGTTCTTGTGCAGTACCG
CCACGGTCAGGAGATGGACTCCGGCAGTAGGGAATGTCGAGACGAAAACT
CGTCGCGTGCTTCCTCTGCTGGTCGGAGACGTGCTACGCGCGAGATGTTC
TTGTGCAGTACCGCCACGGTCAGGAGCAGGAGGCACGAGTCGGACGACGA
CTTTCTTGCCCGCGTCACCCATCTTCGCCTCCACAACAAGGGTATCTCCA
CCCTCAATAACGCCAACGTCTTCGAAGCTTGCCCTTCTCTCAAGCAGGAG
GCACGAGTCGGACGACGACTTTCTTGCCCGCGTCACCCATCTTCGCCTCC
ACAACAAGGGTATCTCCACCCTCAATAACGCCAACGTCTTCGAAGCTTGC
CCTTCTCTCAAGGTCCTGTACCTGTACGACAACTGCGTGGAATCCCTAAA
GGGTTTGGAAAGGCTGCAACAGATGGAGCAGCTCTACGTCGACAACAACT
TGCTGGCGACCGTCCAGGGCACCTTGCCTTGCAGGCGGCTCACGAAACTG
TCCTGTACCTGTACGACAACTGCGTGGAATCCCTAAAGGGTTTGGAAAGG
CTGCAACAGATGGAGCAGCTCTACGTCGACAACAACTTGCTGGCGACCGT
CCAGGGCACCTTGCCTTGCAGGCGGCTCACGAAACTGCACTTAAGCGGGA
ACAGCATCTTGATGTTGTCTGGGCTTGAGTTTGCGGTCTGCCTGGAAGAA
CTGCATGTAGCCAAACAGCGACTCCCAAGAGGACAGCGCTTCGCCATCGA
CCAAGCATCCATCAATGGCATCAAGGCACTTAAGCGGGAACAGCATCTTG
ATGTTGTCTGGGCTTGAGTTTGCGGTCTGCCTGGAAGAACTGCATGTAGC
CAAACAGCGACTCCCAAGAGGACAGCGCTTCGCCATCGACCAAGCATCCA
TCAATGGCATCAAGGACTCGTTGGTGGTGCTAGATGCCTCGGGAAATGGC
ATGGGTGGGATGGAAATCGAGCCTGTACTCGACCTGTACCGGCTCGAGAC
CCTCAATTTGGCGGACAACGATATTGAGGAAATGGCGCAGGACTCGTTGG
TGGTGCTAGATGCCTCGGGAAATGGCATGGGTGGGATGGAAATCGAGCCT
GTACTCGACCTGTACCGGCTCGAGACCCTCAATTTGGCGGACAACGATAT
TGAGGAAATGGCGCAGGTGGTTGACCTGGTGGGCAGCTTGGAGATGCTGA
GGAATATTGACCTGAGAGGCAACGCAGTCAGCCGGATGGCGAAATACTTT
GAGAGGGCCGTTACCAGGTGGTTGACCTGGTGGGCAGCTTGGAGATGCTG
AGGAATATTGACCTGAGAGGCAACGCAGTCAGCCGGATGGCGAAATACTT
TGAGAGGGCCGTTACCAGGTGTGGGGACAACCTGGCGACGCTCGACGGCA
AGCCGGTTCTTTCGCAACACCGGTTGATGCTACAGCGGCTAGACCGTCAT
AAGCGGGCAGAGGCAAGGAAATCTGCCTCGAAAACCCTGAGCAGCTCCAC
CGCCCACGCACCCATGGCAGAACCTGGGTGAGTGTGGGGACAACCTGGCG
ACGCTCGACGGCAAGCCGGTTCTTTCGCAACACCGGTTGATGCTACAGCG
GCTAGACCGTCATAAGCGGGCAGAGGCAAGGAAATCTGCCTCGAAAACCC
TGAGCAGCTCCACCGCCCACGCACCCATGGCAGAACCTGGGTGA
back to top