mRNA_C-linearis_contig90.16782.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig90.16782.1
Unique NamemRNA_C-linearis_contig90.16782.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig90.16782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig90contigC-linearis_contig90:560202..561809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size630
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig90.16782.1prot_C-linearis_contig90.16782.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig90 560299..560703 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930769.3935757-UTR-C-linearis_contig90:560201..5602981622930769.3935757-UTR-C-linearis_contig90:560201..560298Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 560202..560298 -
1690881240.3762212-UTR-C-linearis_contig90:560201..5602981690881240.3762212-UTR-C-linearis_contig90:560201..560298Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 560202..560298 -
1622930769.424814-UTR-C-linearis_contig90:560703..5608061622930769.424814-UTR-C-linearis_contig90:560703..560806Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 560704..560806 -
1690881240.398737-UTR-C-linearis_contig90:560703..5608061690881240.398737-UTR-C-linearis_contig90:560703..560806Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 560704..560806 -
1622930769.4393973-UTR-C-linearis_contig90:561784..5618091622930769.4393973-UTR-C-linearis_contig90:561784..561809Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 561785..561809 -
1690881240.4120345-UTR-C-linearis_contig90:561784..5618091690881240.4120345-UTR-C-linearis_contig90:561784..561809Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 561785..561809 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930769.410797-CDS-C-linearis_contig90:560298..5607031622930769.410797-CDS-C-linearis_contig90:560298..560703Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 560299..560703 -
1690881240.388477-CDS-C-linearis_contig90:560298..5607031690881240.388477-CDS-C-linearis_contig90:560298..560703Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 560299..560703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig90.16782.1

>prot_C-linearis_contig90.16782.1 ID=prot_C-linearis_contig90.16782.1|Name=mRNA_C-linearis_contig90.16782.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=135bp
MDRRRHAAHAVIRVGVSLCGYLQSYETPNLLGAARTCWGEILGHPHWVGD
GRGRSPSSLMYCLGLGALLLIFRLSGAGVSVRGRYFRRSGAGAGDLHVYH
VMSYPPVQPVGREAICFSRWRTNVSPQRFIWGKG*
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mRNA from alignment at C-linearis_contig90:560202..561809-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig90.16782.1 ID=mRNA_C-linearis_contig90.16782.1|Name=mRNA_C-linearis_contig90.16782.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1608bp|location=Sequence derived from alignment at C-linearis_contig90:560202..561809- (Chordaria linearis ClinC8C monoicous)
CAGTACCGCACAGACACCGCAGAAGGTGATATGTCGGCGCATGTGTGGAA
ACGGTTGTGCAAATTTCGTGGGGTCCGCCAAGTGGTGTTATTTGCGGGTG
ATTTGTTTTTGACAGGTACTGTATACGCCAGTACCGGGCTACAACAGCAG
TGTACATACACTGACGCGTAGGCTGCGAGTGGACGTTCATGCGTACAGAC
AGTTAGCGTGGACTGTTTAGCTTATTAGCGTGAACATCGGATTGTGTGAG
GGGAGGGGGTGTCAGAGCACTACATAGTGTTGTACGGTATTGTTGGCTGG
CTGGAAAGATAGACTAGAACAGATGCGAAAAAAGGAACATAATAATAATA
TAAACATAATTCCGGCTGCCAATTTCCCGCAACAGGTTGTCCCGCCCGCG
TCGATAATATCGTGCCCAAGGGCCATCTGCCCCCTGGTACTTCATAAGCT
TCCGATCTGGGATTGGGGTTAGCAAAAAGTGCATTTCTTCGCTTGTGTTT
GGGGAGATTTAGGGAGCGGTGCGAAAGTTGACCGGATGTTTGAATTACAG
CAGTTTTTGATCTCCCAGCAAATGACGTGCGTGCATCATGCACGGCGCGC
ACCTTGCACGGCGCGCACACCGTGCTCTGAGTTTCACACCAATGGCACGA
GCAATTGGACAAGAAGCCAGGCAGGCAAAATTGTAGCAGCCATGTTGCGA
AACAGGACAGCAGCACGTTGGGGTAGGCCAACGCTGCCGTCTCGTAGCGG
CAGTAGCATGTATACATACCGTTGCGCAAAATTCCGTTGTGTTACAAGAA
AACGTTGTGCGGTTGCAGACGTGACACCCCTCCTCCTGTGCTCTCGTGTG
TACCTTTTTTTTGGGTAGAATGGATTAGTGCGTTGTCGCCATTAAATGTT
GTTGGTTTGCTGGCGTTCGGCGTGGCTGAGAACGCGACCCTTGTTCGGTG
TCTTCTCCTCGCTCTCCTCACTCTCCTCATTTTAATCCGGTTTTTCGCTG
CAGGGAAAGAAAATGACTTCCACTGCCGCGGGCAAAGGGAAGGCCAAGGC
AGGTGCTTCGAAATCCAAGAAGAAGAAGAAGACGAAGGTGAAAAAGGTAG
GTCTGTATGGACAGACGAAGACATGCAGCTCACGCCGTCATTCGTGTCGG
AGTTAGTTTGTGTGGATACCTTCAGTCATATGAGACGCCCAACCTCCTAG
GGGCCGCTCGAACTTGTTGGGGCGAGATTCTTGGTCATCCGCATTGGGTG
GGAGATGGGCGTGGGCGCTCCCCTTCTTCCCTCATGTATTGTTTGGGTCT
TGGCGCCCTGTTGTTGATCTTTCGTCTGTCAGGCGCAGGAGTGAGTGTCA
GGGGCAGATATTTTCGTCGGTCAGGCGCAGGCGCAGGAGATTTGCATGTA
TATCATGTGATGTCGTACCCACCGGTTCAACCGGTGGGGAGAGAAGCCAT
TTGCTTTTCTCGGTGGCGGACCAACGTCAGCCCGCAGCGCTTCATTTGGG
GGAAAGGCTAGGGAAGGTTGTACATACAATAGTCGCACTTCCCGACAAGG
GTTATATCTGTTTGAACTTTTAAAGCTGCATACACAGAGCTGCATAGAAA
GAGAGAGC
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Coding sequence (CDS) from alignment at C-linearis_contig90:560202..561809-

>mRNA_C-linearis_contig90.16782.1 ID=mRNA_C-linearis_contig90.16782.1|Name=mRNA_C-linearis_contig90.16782.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at C-linearis_contig90:560202..561809- (Chordaria linearis ClinC8C monoicous)
ATGGACAGACGAAGACATGCAGCTCACGCCGTCATTCGTGTCGGAGTTAG
TTTGTGTGGATACCTTCAGTCATATGAGACGCCCAACCTCCTAGGGGCCG
CTCGAACTTGTTGGGGCGAGATTCTTGGTCATCCGCATTGGGTGGGAGAT
GGGCGTGGGCGCTCCCCTTCTTCCCTCATGTATTGTTTGGGTCTTGGCGC
CCTGTTGTTGATCTTTCGTCTGTCAGGCGCAGGAGTGAGTGTCAGGGGCA
GATATTTTCGTCGGTCAGGCGCAGGCGCAGGAGATTTGCATGTATATCAT
GTGATGTCGTACCCACCGGTTCAACCGGTGGGGAGAGAAGCCATTTGCTT
TTCTCGGTGGCGGACCAACGTCAGCCCGCAGCGCTTCATTTGGGGGAAAG
GCTAGATGGACAGACGAAGACATGCAGCTCACGCCGTCATTCGTGTCGGA
GTTAGTTTGTGTGGATACCTTCAGTCATATGAGACGCCCAACCTCCTAGG
GGCCGCTCGAACTTGTTGGGGCGAGATTCTTGGTCATCCGCATTGGGTGG
GAGATGGGCGTGGGCGCTCCCCTTCTTCCCTCATGTATTGTTTGGGTCTT
GGCGCCCTGTTGTTGATCTTTCGTCTGTCAGGCGCAGGAGTGAGTGTCAG
GGGCAGATATTTTCGTCGGTCAGGCGCAGGCGCAGGAGATTTGCATGTAT
ATCATGTGATGTCGTACCCACCGGTTCAACCGGTGGGGAGAGAAGCCATT
TGCTTTTCTCGGTGGCGGACCAACGTCAGCCCGCAGCGCTTCATTTGGGG
GAAAGGCTAG
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