mRNA_C-linearis_contig90.16777.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig90.16777.1
Unique NamemRNA_C-linearis_contig90.16777.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig90.16777.1 vs. uniprot
Match: D7FTP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP5_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.610e-18
Identity = 43/83 (51.81%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:  121 GPGSDGNVTGCVPSAGLDDHRSYVGTFHRWCEECGKTSPGKSRFYVFKGIPTLNNGRESNAGAATSLTNGSCRQMCLPCDKHG 369
            G G D   T    SAG+D HR++VG F+RWCE+C + S  +S FY + GIPTLN GR + A        G CRQMCLPCDK G
Sbjct:   26 GAGRDPTAT----SAGMDSHRTFVGRFYRWCEDCKEASARESDFYEYSGIPTLNGGRPTPALPPHYTAKGLCRQMCLPCDKGG 104
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig90.16777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTP5_ECTSI2.610e-1851.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig90contigC-linearis_contig90:439492..441676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_009380.1
Exons2
Model size1315
Cds size459
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig90.16777.1prot_C-linearis_contig90.16777.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig90 440346..441676 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930776.056842-UTR-C-linearis_contig90:439491..4403451622930776.056842-UTR-C-linearis_contig90:439491..440345Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 439492..440345 -
1690881244.286914-UTR-C-linearis_contig90:439491..4403451690881244.286914-UTR-C-linearis_contig90:439491..440345Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 439492..440345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930776.0794237-CDS-C-linearis_contig90:440345..4407071622930776.0794237-CDS-C-linearis_contig90:440345..440707Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 440346..440707 -
1690881244.2967546-CDS-C-linearis_contig90:440345..4407071690881244.2967546-CDS-C-linearis_contig90:440345..440707Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 440346..440707 -
1622930776.0957665-CDS-C-linearis_contig90:441579..4416761622930776.0957665-CDS-C-linearis_contig90:441579..441676Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 441580..441676 -
1690881244.305815-CDS-C-linearis_contig90:441579..4416761690881244.305815-CDS-C-linearis_contig90:441579..441676Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 441580..441676 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig90.16777.1

>prot_C-linearis_contig90.16777.1 ID=prot_C-linearis_contig90.16777.1|Name=mRNA_C-linearis_contig90.16777.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=153bp
ANSCHEDGCSCEKAGEGCTCVDHVHVKNNSVGGQALGIGCGPGSDGNVTG
CVPSAGLDDHRSYVGTFHRWCEECGKTSPGKSRFYVFKGIPTLNNGRESN
AGAATSLTNGSCRQMCLPCDKHGEIAALATEYPASDRLSSDRCRVLARDH
VA*
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mRNA from alignment at C-linearis_contig90:439492..441676-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig90.16777.1 ID=mRNA_C-linearis_contig90.16777.1|Name=mRNA_C-linearis_contig90.16777.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2185bp|location=Sequence derived from alignment at C-linearis_contig90:439492..441676- (Chordaria linearis ClinC8C monoicous)
GCCAACTCTTGCCACGAGGACGGGTGTTCCTGCGAGAAGGCGGGCGAGGG
ATGCACCTGCGTCGACCACGTGCACGTGAAGAACAACAGCGTCGGCGGTG
AGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTGGTCGGGTGACTTCCCCTG
TTGTTTCCGTTTCGTCTCATGGATATAATAGCCCCCGTCTTTCCTGGTGT
GCCTTTCACCCCACGTAAACCAGGGCATCCCCGCCCCCCTGCTCCATGCA
ATGCATCGATACCAAGGCGTGCGATTTGACCCGTTGGATGAAACTAAATG
CTGTGGCCTCGGGGTCGAAGATTAGCTATGCTTATGTTGTTGTTATTGGC
GTCGCCTTCCCGAGAGTGGTGTATTGATGCCACAATTTTGATGCCTTTCA
CGAGTCCCTGGAGGTAGATTACAACTACTCGTGTCGGCTCTAAACAACAT
GGTCGGGACGTATCCGTGTGCGCGGCGTTTTCATTTGTTTTGTAAAACCA
ATCTCTTCTGATAGATGAGGGTGCCTGTTCGCGTCGGACATCGTGCGATC
AACGTAGGCCAATAGAGCACCCCATTATGTTTCCTTCGACGCGCATGAAT
TACCTACCCTAGACTACTTGTTCACAAAGCTGTGTACGTGTGTTGTGTGG
CCATTGCCAAGATAGGGGGGACACTTTTGGAGCTACACGGTTGGGTAAAC
TACTTGATTTTAGTATGTGGGAGTGAAATTGGGGGTACCCCTCCTTTCGT
GGCACCAGTCGTGCGCAGGAGTTGAGTCGTACTTGGGTGCTTGCATTAAT
TAACACCAAGGTTCTCTGGGCACCATCCGTTGCGCGGTTCGCGGGCGTTT
GGCGCTCCACCTTGAAGTGCGTTGAAGAAACGCTACGAGCGACGGCTGTA
CCCCCATCTGATTCCACGTTGACCCATTATCGTCAATCCTGTTGGTTTCG
TACGTTGACCCGTTCACAGGGCAGGCTCTCGGAATTGGGTGCGGGCCGGG
ATCCGATGGCAATGTCACGGGCTGTGTGCCGTCCGCGGGCCTGGACGACC
ACAGGTCGTACGTGGGCACGTTCCATCGATGGTGCGAAGAGTGCGGAAAG
ACGAGCCCCGGCAAATCACGCTTCTACGTGTTCAAGGGAATTCCAACCCT
GAACAACGGCCGAGAATCAAACGCTGGCGCTGCCACCTCACTCACCAACG
GCAGTTGTCGTCAGATGTGCCTCCCTTGTGACAAGCACGGGGAGATCGCG
GCCCTGGCGACTGAATACCCCGCCAGTGACAGGTTGTCCAGCGATAGGTG
CCGGGTCCTGGCTCGCGACCACGTGGCTTAGGCACACGGATTTTGGGCCC
TTTGAAAGGGGCGAGGGACTTCAAACGTCCGTAGTGTACTTATTCTCATC
TAAACGTGGTACGTGGTTTTGGGAAATTGAAAGTGGTTTAAAGATCACGA
TCACCACCCGGTTGAATATGACCTACAATTGCTGCAGAAAATCAATACTT
CGACTATTTTTGTAGCCATAGGCAGTACTGCTGGCGGTGGCTCATCGGTC
ATATGCATACAAAAGAAGATCTGTTATTTCCGCTGTTACTGCCAGGAACG
GATGTGGACGGGGTGTAGCAGTGGGAACATTCAAGTTTCGAGATTTGGAT
CACTGGAAGATTTTCCCCTCACTCCAGAGAATCGCTAGCTTTGAGCGGAT
GGGTAGGGGGAATCCCTACATAGCCTGTGACTGTTAGAGAGAAAAATGAT
CACCCTCGTGTGACATGCGGTGTGTTTTGGTTACCGCCGTTGTCGATTTA
TGTAGCAAAAAAAGACATCGGCATGTACGTTTAGGTTTTGCCAAAGAATC
TTGCACCCCTCCCTTCATTTGTGGCCCGAAGGTGTGGGGCAGGAAAGGAG
AGACGAGACAGAGAGAGAGAGCGACAGAGAGAGAGGCGGTAGTGTTTTTT
TTTATGTTTCCCCTCACCAATTCATACCATTTTTGACTACCAGTAGATTT
TGTCAGCAGGTTCAGCGTGTATATCCTCAGAGAGAGGTGGTTGTGAAGGT
GGTTTTACGATCACCATACGATTGATGGTGAATACTTGGCGGCCCGGCCA
GACGCGGGTTTGCCGCGGTACAGGTTGGCATGACTGAAAACATCAGTATT
ATTGCCGCCGTGGGCTGACCCGTATAATAGATAAG
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Coding sequence (CDS) from alignment at C-linearis_contig90:439492..441676-

>mRNA_C-linearis_contig90.16777.1 ID=mRNA_C-linearis_contig90.16777.1|Name=mRNA_C-linearis_contig90.16777.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at C-linearis_contig90:439492..441676- (Chordaria linearis ClinC8C monoicous)
GCCAACTCTTGCCACGAGGACGGGTGTTCCTGCGAGAAGGCGGGCGAGGG
ATGCACCTGCGTCGACCACGTGCACGTGAAGAACAACAGCGTCGGCGGCC
AACTCTTGCCACGAGGACGGGTGTTCCTGCGAGAAGGCGGGCGAGGGATG
CACCTGCGTCGACCACGTGCACGTGAAGAACAACAGCGTCGGCGGGCAGG
CTCTCGGAATTGGGTGCGGGCCGGGATCCGATGGCAATGTCACGGGCTGT
GTGCCGTCCGCGGGCCTGGACGACCACAGGTCGTACGTGGGCACGTTCCA
TCGATGGTGCGAAGAGTGCGGAAAGACGAGCCCCGGCAAATCACGCTTCT
ACGTGTTCAAGGGAATTCCAACCCTGAACAACGGCCGAGAATCAAACGCT
GGCGCTGCCACCTCACTCACCAACGGCAGTTGTCGTCAGATGTGCCTCCC
TTGTGACAAGCACGGGGAGATCGCGGCCCTGGCGACTGAATACCCCGCCA
GTGACAGGTTGTCCAGCGATAGGTGCCGGGTCCTGGCTCGCGACCACGTG
GCTTAGGGCAGGCTCTCGGAATTGGGTGCGGGCCGGGATCCGATGGCAAT
GTCACGGGCTGTGTGCCGTCCGCGGGCCTGGACGACCACAGGTCGTACGT
GGGCACGTTCCATCGATGGTGCGAAGAGTGCGGAAAGACGAGCCCCGGCA
AATCACGCTTCTACGTGTTCAAGGGAATTCCAACCCTGAACAACGGCCGA
GAATCAAACGCTGGCGCTGCCACCTCACTCACCAACGGCAGTTGTCGTCA
GATGTGCCTCCCTTGTGACAAGCACGGGGAGATCGCGGCCCTGGCGACTG
AATACCCCGCCAGTGACAGGTTGTCCAGCGATAGGTGCCGGGTCCTGGCT
CGCGACCACGTGGCTTAG
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