mRNA_C-linearis_contig9.16738.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16738.1 vs. uniprot
Match: D7FMV2_ECTSI (Similar to kinesin-related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV2_ECTSI) HSP 1 Score: 958 bits (2476), Expect = 1.850e-314 Identity = 813/1869 (43.50%), Postives = 987/1869 (52.81%), Query Frame = 1
Query: 22 GSFSVRHLSTTINTSENSSPQIGERIQ---PAQLLQQLVA-------GAMEEQNNASGGPGGPAAASEAPLILLNGHVCAL------SPETLQKEHNGFHLREPYQWESDAEAAGFLLPRWMWSVVGGETGGGGLLMMTAP--RTTNHSESTIP----STSSPTGRHSDGTQTSTAGNAGAGGAAALGERDG-FEPFVQLASWGHGSFTPLAQFTSDGLLLGG-GSGDGGDIAAEACQLGSGQEERCRNRDRA-HSIWTREESLVIAPARDLHLRSGGAPSGTGGAKGQGAVRITARGRHGTIGLDSASLVWTPSSSMIAANNSSGATGCSSGSPPPKNASCLDAAAPPFVRVDAERLDAVGFSDIIRLSAGRSFDLAVAGAGVGQERGGRDVQGGRPEG-GTGEREEDGWRSRLPGSGLTAALLRGDSGSLNASAGVVKVEAVDTVVVAGANGARLVSAAGDAFLGASGANGSVVLGGGAAILGAAPTVSFSAAGEGFLAKGMPHKTSQDGGRLTWVSGGYLNLTAGAARIGGPPGSAGGGGASIEAGEERVHLRASKSSLLHVSAADISLRTPALVLFSSSPTVLAAHDDSDHNTSFGR--------DQPPS------PSQKSAGPVNEAAPWSRLSLD-GGALAINATESAELETPGASLWLVGRRCNGDEKPGTTSSGCGGSGASSTGLGRGLGELVAEADAVLIRARSASAGVSIVA-DGVKSRVGNREGAAAGGGREIDDSGDGGGNGANAGGRLEVSAQGVSVEGISTSLGASRRVSLQVGGPAEAKGGLKR---GGGAKAGDDDNAGSSS-VDMGGWGVRVLAGVPEAPPQGANDSI-----------LLRAASRVVLAGREVAISN--GXXXXXXXXXXA-------------------------LWMKDSALTGRADEHVLLQAGRSPLATSGDSQGGKT-AASRISMRESLIHVRAGGEAGDASEAAAAGDSDAS--------------------------SADDGREGLLVEVAGLANVSSTEGLRLQTEGETYIRSANETLLHSPRGILLSAEPQKEEEFRAAAGAPR-------------DAAGRGXXXXXXXXXXXXXGGHILLAPGTGGGVGIGPGFSSRDLVGA----SGAGGTPPSSACLLPPMPWSPSLPRAVIRGCPCCPLAAGSTSAVRFGCEELPYSGGLEVHHHQNGPAGDFLVLELASSPGRVVGDARGRWGVGAVPRPGGTETTPELEAALHVFGAPAAVAAAAAAESTGPAAATLVPVA-VLVEAAPGRAGVLQLLSGGEGAPFPS-----PAA-NAIVLSSGSRQAGDTNEAIPTHSHWTMSQLVAADENSKSGGRVGSTSRPRWTDPQAAPSSWAGGMALTHIASDGGASGWGPALGTLTSTS---------SAKPGEAGVSGQHHSAAARPVVALGAGGRSGFGTASTGARVTVGGALVAEQVLVFSDEGMVRDIEEFGAQGGSQAMETIRQVGVVRFGWTKEASESYGLELGVRQTGIIAQQVEKEAPAWANGLVSRDAATGRKALSHSKLLVTLVAAFQHLDGSVSARGETRGVRLGEVERALVSAEERSLGLSERLGAVEAMGATGLESLLAQTRNVSMLEGRLSEQGGQVAEVAAALSRVQESAAQERGTIQEWRVERSRREQELENEVIGLKARLAEHAEHQAASREEQEGRQKAQDEQIRALSLRIGSIHASASQSSSKCDASLLAEVGRERQQPLGLYVPDRLWVTWQRMFEEEFTQTNVFFLEEVRRIENRLRDELRISASAAAAVDTASGVATPSSSLSPGAGGLADGHYPPMLPVPEDKFLKHLDKHKDSVLLEAMAAVQRHRYHLAALR 5196
G+F V+H ST + S +SS + GE P +L+ L G+ E++N GG + + PLILLNGHVC + S E F L+EPY WESD EA GF+LP WMW VGGE GGG LLM AP T S P + S P + + + G RDG FEPF+QLASWG G F PLAQFT +LLGG G G+ + EA LG+ E + D+ H+I TRE L I PA DLHL+SG A G G G V + ARG G I L S SL W+P+S + P ++ C A +RVD L+A GFS+ +RLS+ RSF++A+A G Q+ GG++ G +G G GE S G AALL+GD+GSLN SAGVV VEA DT++ AG NG R+ S+AGD + A+G +GSVV+ GG AI+G APTVSF+A YLNL+ AA IGGP G G GGA +EA +E V LRAS SSLL VSAA++S+ TPA+ L SSSP AA QPP P + GP A LSLD G +A+ A+ S +ETPGA + L GRR GD G LGRG G LVAEA V IRA SAGVS+VA DG ++R EGA+ G A AGGRLEV +GVS G STSL +S RV+L+VGG A+ + + GG A + + SS+ V++G WGVRVLAG LL A SR+V ++AIS+ GXXXXXXX A LW ALTGRADE VLLQAG + S +G + A S IS+ ES IH+ AGG GD+S A + AS R+GL+VE G AN+SSTE LRL+ EG I S N+T L+SPRGILLS + + D AG G GGH+LLAPG G G GFSSR L A SG+ G P S LL WSP RA + C C L GS SAVRFGCE LPYSGGLEV HH GP GD LVLELASSPGRVVGDARGRWGVGAVP T +L AALHVF A + AA+ G T PVA VLVE+ G AGV+Q+LS G + PS PA N IVLSS RQ+G+ E TH+HW +SQL A + + GS SRP+W DPQA SSWAGGM LTH+ +DGG SGW PALGT + + PG G H AARP VA GR+GFG STGARVTVGGAL+AEQVLV SDEGMVRD+E GAQG SQAME +R V VV FGWT EAS SYGL+L VRQ GIIAQQ E+E + + L RD ATGRKA+SHS+LL TLVAAFQHLD S+ A G R RL E+ERA SA+E S +S+RL AVEAM GL+SLL EWR +RS RE++L +++ +K RLA E A +E+ + R +QDEQIRALSLRIG++HAS SSKCD+SLLAE+ R+ + L DR+ QR+ ++ FLEEVRR+E+ L EL+ T SG A PS + P +G A + + + +L+ HKDSV L AMAAV RHR HL ALR
Sbjct: 76 GTFVVQHASTVVKPS-SSSRRWGESETSHLPDYVLELLAGREVGTRPGSGEKKNGTDGGSAATSPGAVEPLILLNGHVCTVLSLGKPSVGGFGSEGADFLLQEPYAWESDEEAEGFVLPPWMWDAVGGEMGGGNLLMTQAPIANVTGGSSCWPPHRKGNFSDPIASVDEYRVDKDSSHVG---------RDGCFEPFLQLASWGRGRFNPLAQFTPREILLGGVGGGERRSVPPEA-PLGTRPEGKNTTSDKVMHAIRTREGGLEIVPAGDLHLQSGVARPG--GEVLGGDVHVAARGEQGLIRLRSGSLEWSPASPSL---------------PECPSSDCHPRGAVASLRVDDGTLEATGFSEAVRLSSARSFEVAIAATGEEQKDGGKNDGIGHEQGRGVGEGPHQHGYSSGTGLETKAALLKGDAGSLNTSAGVVNVEATDTLLAAGRNGVRVTSSAGDVRVDANGPDGSVVVRGGGAIVGVAPTVSFTAETAAXXXXXXXXXXXXXXXXXXXXXXXYLNLSVEAATIGGPQGGEG-GGALLEADDE-VRLRASNSSLLRVSAAEVSVHTPAIFLRSSSPLTAAAXXXXXXXXXXXXXXXXXXPPQQPPQTTGRQDPGARGPGPTAAA----ELSLDDSGGVAVTASGSIGMETPGAFVQLSGRRSGGDGL-------AAGGRDDXXXLGRG-GLLVAEAGDVRIRA---SAGVSVVAADGAEARAWAEEGASNGT--------------AAAGGRLEVFPEGVSAAGTSTSLDSSERVTLRVGGSAKRRTAVSPESDGGVQSAAEGEEVESSAIVELGDWGVRVLAGASAXXXXXXXXXXXXXXXXXXXXXLLNAGSRLVFVAPQLAISHVGGXXXXXXXEGSARRHGAAGSGTIIEDPFSXXXXXXXGLWSDGLALTGRADERVLLQAGLGSTSESSSKKGAQDRAGSHISVEESWIHLCAGG-GGDSSLPALSSSRMASXXXXXXXXXXXXXXXXXSGCTGGLGGGEGPSRKGLMVEAIGEANISSTEDLRLRAEGRIQISSPNDTSLYSPRGILLSGSSPRNGDGGXXXXXXXXXXSADHKESPSLDGAGLGGKGHNGLGLGQEEGGHVLLAPGAGSXXXXGRGFSSRHLASAAAVTSGSAGLPRSMLSLL----WSP---RAGAQACLCFHLEEGSRSAVRFGCEGLPYSGGLEVRHHLEGPGGDTLVLELASSPGRVVGDARGRWGVGAVPDADATGAPTQLSAALHVFAA-VPLPTVAASSGLGGGEPTKPPVASVLVESPAGSAGVMQMLSVGGSSSRPSVPELSPAPDNTIVLSS--RQSGEAQEGS-THNHWVVSQLAAGRDK-----KAGSASRPQWADPQADHSSWAGGMTLTHVVADGGPSGWRPALGTAQQSXXXXXXXXXXAGAPG-----GDHGGVAARPAVAFSVNGRAGFGACSTGARVTVGGALMAEQVLVLSDEGMVRDVESLGAQGNSQAMEAVRGVDVVTFGWTNEASLSYGLDLEVRQLGIIAQQAEREKRS--SSLAWRDVATGRKAVSHSRLLATLVAAFQHLDASIQANGTIRDARLQELERASASAQESSGQVSDRLEAVEAMATRGLDSLL------------------------------------------EWRRDRSLREKQLLEDIVEMKDRLAAQEEQTKALQEDHDSRTNSQDEQIRALSLRIGTVHAS---QSSKCDSSLLAELEALRKTQVVL--EDRITGLAQRVHQDPALNEEAMFLEEVRRLEDILLTELQGGRIPQTTRPT-SGDALPSDDIHPASGSSART-------IGDLEAQSYLENHKDSVRLGAMAAVLRHREHLMALR 1806
BLAST of mRNA_C-linearis_contig9.16738.1 vs. uniprot
Match: A0A6H5KPL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPL0_9PHAE) HSP 1 Score: 714 bits (1843), Expect = 5.470e-225 Identity = 673/1594 (42.22%), Postives = 805/1594 (50.50%), Query Frame = 1
Query: 22 GSFSVRHLSTTINTSENSSPQIGERIQ---PAQLLQQLVA-------GAMEEQNNASGGPGGPAAASEAPLILLNGHVCAL------SPETLQKEHNGFHLREPYQWESDAEAAGFLLPRWMWSVVGGETGGGGLLMMTAPRTTNHSESTI--PSTSSPTGRHSDGTQTSTAGNAGAGGAAALGERDGFEPFVQLASWGHGSFTPLAQFTSDGLLLGGGSGDGGDIAAEACQLGSGQE-ERCRNRDRAHSIWTREESLVIAPARDLHLRSGGAPSGTGGAKGQGAVRITARGRHGTIGLDSASLVWTPSSSMIAANNSSGATGCSSGSPPPKNASCLDAAAPPFVRVDAERLDAVGFSDIIRLSAGRSFDLAVAGAGVGQERGGR-DVQGGRPEGGTGEREEDGWRSRLPGSGLTAALLRGDSGSLNASAGVVKVEAVDTVVVAGANGARLVSAAGDAFLGASGANGSVVLGGGAAILGAAPTVSFSAAGEGFLAKGMPHKTSQDGGRLTWVSGGYLNLTAGAARIGGPPGSAGGGGASIEAGEERVHLRASKSSLLHVSAADISLRTPALVLFSSSPTVLAAHDDSDHNTSF----GRD-----QPP------SPSQKSAGPVNEAAPWSRLSLD-GGALAINATESAELETPGASLWLVGRRCNGDEKPGTTSSGCGGSGASSTGLGRGLGELVAEADAVLIRARSASAGVSIVA-DGVKSRVGNREGAAAGGGREIDDSGDGGGNGANAGGRLEVSAQGVSVEGISTSLGASRRVSLQVGGPAEAKGGLKR---GGGAKAGDDDNAGSSS-VDMGGWGVRVLA-------GVPEAPPQGANDSILLRAASRVVLAGREVAISN----------------------------GXXXXXXXXXXALWMKDSALTGRADEHVLLQAGRSPLATSG---DSQGGKTAASRI----------SMRESLIHVRAGGEAGDASEAAAAGDSDASSADDGREGLLVEVAGLA-NVSSTEG--LRLQTEGETYIRSANETLLHSPRGILLSAEPQKEE--EFRAAAGAPR---------DAAGRGXXXXXXXXXXXXXGGHILLAPGTGGGVGIGPGFSSRDLVGASGAGGTPPSSACLLPPMPWSPSLPRAVIRGCPCCP-LAAGSTSAVRFGCEELPY--SGGLEVHHHQNGPAGDFLVLELASSPGRVVGDARGRWGVGAVPRPGGTETTPELEAALHVFGAPA--AVAAAAAAESTGPAAATLVPVA-VLVEAAPGRAGVLQLLSGGEGAPFPS-----PAA-NAIVLSSGSRQAGDTNEAIPTHSHWTMSQLVAADENSKSGGRVGSTSRPRWTDPQAAPSSWAGGMALTHIASDGGASGWGPALGTLTSTSSAKPGEAGVSGQHHSAAARPVVALGAGGRSGFGTASTGARVTVGGALVAEQVLVFSDEGMVRDIEEFGAQGGSQAMETIRQVGVVRFGWTKEASESYGLELGVRQTGIIAQQVEKEAPAWANGLVSRDAATGRKALSHSKLLVTLVAAFQHLDGSVSARGETRGVRLGEVERALVSAEERSLGLSERLGAVEAMGATGLESLL 4458
G+F V+H ST + S +SS + GE P +L+ L G+ E ++ GG + + PLILLNGHVC + S L E F L+EPY WESD EA GF+LP WMW VGGE GGG LLM AP N S+ P G +SD + G G ++ +G FEPF+QLASWG G F PLAQF S LLLGG SG A LG+ + + H+I TRE L IAPA DLHL+SG A +G G G V + ARG HG I L S SL W+P S + P ++ C A +RVD L+A GFS+ +RLS+ RSF++A+A A ++ GG+ D G S AALL+GD+GSLN SAGVV VE + V+A + +A G+ + + GG YL LT A IGGP G G GGA +EA +E V LR S SSLL VSAA++SL+TPA+VL SSSP GRD QPP P + GP A LSLD G +A+ A+ S +ETPGA + L GRR GD G +SG GL RG G LVAEA V I ASAGVS+VA DG +R +GA+ G A AGGRLEV GVS G STSL AS RV+L+VGG A+ + + GG A + + SS+ V++G WGVRV V + +ILL A SR+V ++AIS+ XXXXXXXXXX LW ALTGRADE VLLQAG + SG +S TAA + S R V G E AG+ V+S G LRL+ EG I S N+T L+SPRGILLS + + G P D AG G GGH+LLAPG G GVGIG GFSSR L A A GT P+ + S R R P L A +S G L SGGLEV HH GP GD LVLELASSPGRVVGDARGRWG+GAVP T P+L AALHVF A + VAA + ES P T+ PVA VLVE+ G AGV+Q+LS G PS PA N IVLSS R +GDT E TH+HW MSQL A + + GS SRP+WTDPQA SSWAGGM LTH+ + PG G H AARP VA G GR+GFGT STGARVTVGGALVAEQVLV SDEGMVRD++ GAQG SQAME +R+V VV FGWTK+AS SYGL+L VRQ GIIAQQVE+E + + L RD ATGRKA+SHS+LL TLVAAFQHLD S+ A G R RL E+ERA SA+E S +S RLGAVEAM GL+SLL
Sbjct: 75 GTFVVQHASTVVKPS-SSSRRWGESTTSHLPDNVLELLAGREVRTRPGSGENKDGTDGGSAAISPGAMEPLILLNGHVCTILSLGEPSIGGLGSEGAYFLLQEPYAWESDEEAEGFVLPPWMWDAVGGEMGGGSLLMTQAPIANNIGGSSCWPPHRK---GNYSDHIASVDEYRVGKG-SSNIGRDGCFEPFLQLASWGQGRFNPLAQFASRELLLGGVSGGERRSAPTEAPLGTRPAGKNTTGGNVMHAIRTREGGLKIAPAGDLHLQSGIARAG--GEVLGGDVHVAARGEHGLIRLRSGSLEWSPDSPSL---------------PDCPSSDCHPRGAVASLRVDDGTLEATGFSEALRLSSARSFEVAIAAASEEKKEGGQNDGIGXXXXXXXXXXXXXXXXXXXXXSETKAALLKGDAGSLNTSAGVVNVEVQGSWVIA----------------------------------------------KKLVAFGLAQERAPGGG--------YLTLTVETATIGGPQGGEG-GGALLEADDE-VRLRVSNSSLLRVSAAEVSLQTPAIVLRSSSPLTAXXXXXXXXXXXXXXGDGRDPAPLQQPPPTTGRQDPGIRGPGPTAAA----ELSLDDSGDVAVAASGSIGMETPGAFVQLSGRRSGGD---GLAASGR----DDGEGLDRG-GLLVAEAGDVRI---IASAGVSVVATDGDDARACAEQGASNGT--------------AAAGGRLEVFPGGVSAAGASTSLDASERVALRVGGLAKRRTAVSSESDGGVQSAAEREEVESSAIVELGDWGVRVSLRWLLKPLSVTAMSLLLKSSTILLNAGSRLVFVAPQLAISHVGGGGAGVGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLWSDGLALTGRADERVLLQAGLRSTSESGGKFESATAVTAAKKAPKTVPVVISRSKRAGYTFVPEGVETIPCQHYPRPERHXXXXXXXXXXXXXXXXAGVGVPVASVAGKDLRLRAEGSIQISSPNDTSLYSPRGILLSGSSPRNDGGXXXXXDGTPSADHKESPSLDGAGLGRKGHNGLGLGQEEGGHVLLAPGAGSGVGIGRGFSSRHLARA--AAGTIPTLLYVTNATDHPTSHQRQ--RMAPSLDALVAMESSGGDAGVSVLSPRGSGGLEVRHHLEGPGGDTLVLELASSPGRVVGDARGRWGIGAVPDADATGVPPQLSAALHVFAAVSLPTVAAPSGLESGEP---TMPPVASVLVESPAGSAGVMQMLSVGGSRSRPSVPELSPAPDNTIVLSS--RHSGDTQEGS-THNHWVMSQLAAGRDK-----KAGSASRPQWTDPQADQSSWAGGMTLTHVIAG-------------------SPG-----GDHGGVAARPAVAFGVDGRAGFGTCSTGARVTVGGALVAEQVLVLSDEGMVRDVDSLGAQGKSQAMEVVREVDVVTFGWTKQASLSYGLDLEVRQLGIIAQQVEREKRSAS--LAWRDVATGRKAVSHSRLLATLVAAFQHLDASIQANGIIRDARLQELERASASAQESSEHISNRLGAVEAMAKRGLDSLL 1520 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16738.1 >prot_C-linearis_contig9.16738.1 ID=prot_C-linearis_contig9.16738.1|Name=mRNA_C-linearis_contig9.16738.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1736bp MHSNRRQGSFSVRHLSTTINTSENSSPQIGERIQPAQLLQQLVAGAMEEQback to top mRNA from alignment at C-linearis_contig9:3638180..3670817+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16738.1 ID=mRNA_C-linearis_contig9.16738.1|Name=mRNA_C-linearis_contig9.16738.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=32638bp|location=Sequence derived from alignment at C-linearis_contig9:3638180..3670817+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:3638180..3670817+ >mRNA_C-linearis_contig9.16738.1 ID=mRNA_C-linearis_contig9.16738.1|Name=mRNA_C-linearis_contig9.16738.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=10416bp|location=Sequence derived from alignment at C-linearis_contig9:3638180..3670817+ (Chordaria linearis ClinC8C monoicous)back to top |