mRNA_C-linearis_contig9.16726.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16726.1
Unique NamemRNA_C-linearis_contig9.16726.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig9.16726.1 vs. uniprot
Match: D7FR19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR19_ECTSI)

HSP 1 Score: 331 bits (849), Expect = 5.500e-112
Identity = 174/221 (78.73%), Postives = 178/221 (80.54%), Query Frame = 3 
Query:  171 MLTDMPCEKGLNFRFFDQRTNKQWFKGYWALARIIRRRVYCEEMGLTSGQEFTEMDPTSRHVLIQMGDAPLGYGRWRFETGPAXXXXXXXXXXXXXARQQQYAMVDRLCVLKEYRLRGFAKACLERIVHDVSTQTAQMETAVAAIVIPAPPNTFAHQKLGERGWTPQ----------------------------GDTVDFHGSPYVRMCLFPSAQPATGG 749
            MLTDMPCEKGLNFRFFDQRTNKQWFKGYWALARIIRRRVYCEEMGLTS QEFTEMDPTSRHVLIQMGDAPLGYGRWRFETGPA  XXXXXXXX       QYAMVDRLCVLKEYR RGFAK+CLERIVHDVSTQTAQM+TAVAAIV+PAPPNTFAHQKLGERGWTPQ                            GDTVDFHG+PYVRMCLFPS Q  T G
Sbjct:    1 MLTDMPCEKGLNFRFFDQRTNKQWFKGYWALARIIRRRVYCEEMGLTSQQEFTEMDPTSRHVLIQMGDAPLGYGRWRFETGPAGQXXXXXXXXL------QYAMVDRLCVLKEYRQRGFAKSCLERIVHDVSTQTAQMKTAVAAIVVPAPPNTFAHQKLGERGWTPQDVEPTVQLRAEGKDRVGVQSTAISCVLQGDTVDFHGTPYVRMCLFPSTQAVTAG 215
[Close]
BLAST of mRNA_C-linearis_contig9.16726.1 vs. uniprot
Match: A0A835YLW0_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLW0_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.430e-40
Identity = 78/179 (43.58%), Postives = 101/179 (56.42%), Query Frame = 3 
Query:  198 GLNFRFFDQRTNKQWFKGYWALARIIRRRVYCEEMGLTSGQEFTEMDPTSRHVLIQMGDAPLGYGRWRFETGPAXXXXXXXXXXXXXARQQQYAMVDRLCVLKEYRLRGFAKACLERIVHDVSTQTAQMETAVAAIVIPAPPNTFAHQKLGERGWTPQGDTVDFHGSPYVRMCLFPSAQ 734
            GLNF+ FDQR     F GYW + RI+RRRV+CEE+      EF E D T RH++IQ+GDAP+G  RWR E   A             A     A++DRLC+L  YR RGFA+  +E  + DVS    + +  V A+V+ AP  T    KL +RG+ PQ + V   G P VRMCL  + Q
Sbjct:   36 GLNFKAFDQRVPPTVFNGYWIICRILRRRVFCEELQGVPEMEFDENDGTCRHIIIQVGDAPVGCLRWRIEPPQA-------------AGAPAVALIDRLCILAAYRGRGFARKAMEHALEDVSAVAVEAQVGVGAVVVLAPSGTMLQAKLADRGFVPQAEAV-LKGIPAVRMCLVAAPQ 200
[Close]
BLAST of mRNA_C-linearis_contig9.16726.1 vs. uniprot
Match: A0A7S2D796_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D796_9STRA)

HSP 1 Score: 122 bits (306), Expect = 5.700e-30
Identity = 72/222 (32.43%), Postives = 108/222 (48.65%), Query Frame = 3 
Query:  123 EKCPICGHKGKGKIYQMLTDMPCEKGLNFRFFDQRTNKQWFKGY-------W----ALARIIRRRVYCEEMGLTSGQEFTEMDPTSRHVLIQMGDAPLGYGRWRFETGPAXXXXXXXXXXXXXARQQQYAMVDRLCVLKEYRLRGFAKACLERIVHDVSTQTAQMETAVAAIVIPAPPNTFAHQKLGERGWTPQGDTVDFHGSPYVRMCLF---PSAQPATG 746
            ++CPICGHKGKG  +++         L+F+ FDQ +++  +  Y       W    ALA I+RRRV+ +E+G+    EF E +P SRHV+  MGDAP+ Y RWR +T P                    A++DRLCVL  YR +  A+  L  ++ D++     M   +    +PA  +    + LG        +T    G+P+VR+      P A  A G
Sbjct:   17 QRCPICGHKGKGNSFRLPKFKGSPTHLHFKAFDQHSHEAKWSEYQQEAISHWTALSALASIVRRRVFVQELGIQENLEFDEHEPNSRHVVGFMGDAPVAYARWRLDTAP-----------DGSGSNHSVAVLDRLCVLGNYRTQNVARNMLNFVMQDIAQMPFPMPVTIVVTNVPATYDALLQKLLGHGFAIMSQETFLERGAPHVRLFAHLPAPGAASAAG 227
[Close]
BLAST of mRNA_C-linearis_contig9.16726.1 vs. uniprot
Match: A0A4D9D8K0_9STRA (N-acetyltransferase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8K0_9STRA)

HSP 1 Score: 115 bits (289), Expect = 4.790e-27
Identity = 72/186 (38.71%), Postives = 93/186 (50.00%), Query Frame = 3 
Query:  123 EKCPICGHKGKGKIYQML--TDMPCEKGLNFRFFDQRTNKQWFKGYWALARIIRRRVYCEEMGLTSGQEFTEMDPTSRHVLIQMGDAPLGYGRWRFETGPAXXXXXXXXXXXXXARQQQYAMVDRLCVLKEYRLRGFAKACLERIVHDVS-----TQTAQMETAVAAIVIPAPPNTFAHQKLGERG 659
            EKC +CGH+GKGK Y ++  T  P    L+F+ FDQ    Q FK  WALARIIR RV+ EE G+    EF   D +  HVL  +GDAP+   RWR E  P              +     A++DRL VLK YR RGFA   L+ +  D +     T   +      A++IP         KL E+G
Sbjct:   64 EKCAVCGHRGKGKTYLLVAKTTAPSCATLHFKSFDQTQEAQAFKSLWALARIIRSRVFVEEEGIAEELEFDVHDESCHHVLGFLGDAPVLCARWRVEH-PNGWENRELLSTKMGSTAGPMAVIDRLAVLKPYRGRGFAAEVLKFLGEDAASVLQGTHLGKEVLRAIAVLIPVDLTPCLSDKLREQG 248
[Close]
BLAST of mRNA_C-linearis_contig9.16726.1 vs. uniprot
Match: F0YI42_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI42_AURAN)

HSP 1 Score: 104 bits (259), Expect = 1.650e-22
Identity = 67/223 (30.04%), Postives = 105/223 (47.09%), Query Frame = 3 
Query:  144 HKGKGKIYQMLTDM---------PCEKGLNFRFFDQRTNKQWFKGYWALARIIRRRVYCEEMGLTSGQEFTEMDPTSRHVLIQMGDAPLGYGRWRFETGPAXXXXXXXXXXXXXARQQQYAMVDRLCVLKEYRLRGFAKACLERIVHDVSTQTAQMETAVAAIVIPAPP-NTFAHQKLGERGWTPQGDTVDFHGSPYVRMCLFPSAQPATGGEVTSIAAT*RC 782
            H    K+  +L+ M         P +  L+FRFFD   ++  ++    ++RI+RRR + +E+G+++  EF  +D  SRH L   GDAP+ Y RW  +   A                    +VDRLC L+ YR RG A+ C+E I  D+S   ++M+ ++  +V+  P  N    +KL +  + P    +  H S  +RMCL   AQ   G     I     C
Sbjct:   52 HSSTVKVLFILSSMREVDGTLRKPADVNLHFRFFDITMSESEYRNNIDISRILRRRAFVDELGVSADVEFDNLDAKSRHSLGFYGDAPVSYARWHIDGNAA--------------------VVDRLCTLRAYRYRGVARRCMENIAQDISHCASRMQLSLEGLVVLVPDTNDILQRKLIQASFIPLDGRLTGHLS-CIRMCL--PAQSKNGVSEVGIPGCENC 251
[Close]
BLAST of mRNA_C-linearis_contig9.16726.1 vs. uniprot
Match: A0A7S3ZQB5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZQB5_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.480e-21
Identity = 66/212 (31.13%), Postives = 100/212 (47.17%), Query Frame = 3 
Query:  144 HKGKGKIYQMLTDM---------PCEKGLNFRFFDQRTNKQWFKGYWALARIIRRRVYCEEMGLTSGQEFTEMDPTSRHVLIQMGDAPLGYGRWRFETGPAXXXXXXXXXXXXXARQQQYAMVDRLCVLKEYRLRGFAKACLERIVHDVSTQTAQMETAVAAIVIPAPP-NTFAHQKLGERGWTPQGDTVDFHGSPY--VRMCL--FPSAQP 737
            H    K+  +L+ M         P +  L+F FFD    +  ++    ++RI+RRR Y +E+G+++  EF E D  SRHVL   GDAP  Y RWR     A                    ++DR+C L  YR RG A+ CL+ + HDV    ++++  +  +V+  P  ++   QKL E  +     ++D    P   VRMCL   P A P
Sbjct:   52 HNSTVKVLFILSSMREIDGTLRKPADINLHFTFFDNTMEEPHYRNNIDISRILRRRAYVDELGVSAELEFDEFDGESRHVLGSYGDAPACYARWRVNDNAA--------------------IIDRVCTLHAYRYRGVARKCLQHVAHDVLCCASRLKLTLHGLVLLVPQQHSTIQQKLAEASFI----SLDGSVGPLSCVRMCLPISPEAPP 239
[Close]
BLAST of mRNA_C-linearis_contig9.16726.1 vs. uniprot
Match: A0A1V9Z3I7_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z3I7_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.510e-16
Identity = 59/191 (30.89%), Postives = 88/191 (46.07%), Query Frame = 3 
Query:  126 KCPICGHKGKGKIYQMLTDMPCEKGLNFRFFDQRTNKQWFKGYWALARIIRRRVYCEEMGLTSGQEFTEMDPTS--RHVLIQMGDAPLGYGRWRFETGPAXXXXXXXXXXXXXARQQQYAMVDRLCVLKEYRLRGFAKACLERIVHDVSTQTAQMETAVAAIV--IP-----APPNTFAHQKLGERGWTPQ 671
            KCPICGH GK K+ Q+L        ++FR F    +     G W+ +R++R +++    G+     F  +D T+  +HVLI +GDAP+G  RW F                      + A++++L VL  +R  G     L  IV D++T +  +   V AIV  IP     AP  TF   K   +  T Q
Sbjct:   16 KCPICGHIGKCKVMQLLEKNTPINQVSFRSFRVDVHASPILGNWSFSRLLREKIFAAPTGMFDAPLFDNLDVTNACKHVLIFVGDAPVGSARWSFTYDNGV----------------EVALIEKLGVLDTHRRAGHGAKMLAFIVQDIATTSRDVGRDVFAIVANIPNDPSSAPWKTFVKCKFEPKTHTNQ 190
[Close]
BLAST of mRNA_C-linearis_contig9.16726.1 vs. uniprot
Match: A0A067CC32_SAPPC (N-acetyltransferase domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CC32_SAPPC)

HSP 1 Score: 80.9 bits (198), Expect = 1.350e-14
Identity = 47/166 (28.31%), Postives = 79/166 (47.59%), Query Frame = 3 
Query:  117 QGEKCPICGHKGKGKIYQMLTDMPCEKGLNFRFFDQRTNKQWFKGYWALARIIRRRVYCEEMGLTSGQEFTEMDPTS--RHVLIQMGDAPLGYGRWRFETGPAXXXXXXXXXXXXXARQQQYAMVDRLCVLKEYRLRGFAKACLERIVHDVSTQTAQMETAVAAIV 608
            QG KCPICGH GK K+  +L        ++ R F    +     G W+ +R++R +++     +     F  +D T+  +H+LI +GDAP+G  RW F                      + A++++  +L  +R  G     LE I+ D++T +A++   V AIV
Sbjct:   15 QGVKCPICGHIGKCKVLMLLKKNAPINQVSLRAFRIDVHASPILGDWSFSRLLREQIFALPTAMFGAPLFDNLDVTNACKHILIFVGDAPVGTARWSFTYDNGV----------------EVALIEKFGLLDTHRRLGHGTKMLEYIIQDIATTSAEVGRDVFAIV 164
[Close]
BLAST of mRNA_C-linearis_contig9.16726.1 vs. uniprot
Match: A0A8K1FFY7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFY7_PYTOL)

HSP 1 Score: 74.7 bits (182), Expect = 2.410e-12
Identity = 51/177 (28.81%), Postives = 78/177 (44.07%), Query Frame = 3 
Query:  120 GEKCPICGHKGKGKIYQMLTDMPCEKGLNFRFFD----QRTNKQWFKGYWALARIIRRRVYCEEMGLTSGQEFTEMDPTSRHVLIQMGDAPLGYGRWRFETGPAXXXXXXXXXXXXXARQQQYAMVDRLCVLKEYRLRGFAKACLERIVHDVSTQTAQMETAVAAIVIPAPPN-TFA 635
            G KCPICGH G+ +I+Q+L   P     + R FD        +   +    L  I+R R++ +             DP +RH+L  +GDAP+G  RWR                       Q   ++ L VL + R  G+ K  L+ I+ DV+ +  ++  +  AIV   P + TFA
Sbjct:   17 GTKCPICGHTGRSRIFQILQHRPLANVFSVRGFDCLEKPPVMRNLDRNLLCLTTILRGRIFPQVSASLPD------DPQARHMLAFVGDAPIGTARWRVSA----------------EHGAQVVEIELLGVLVDKRKLGYGKNFLQNILEDVNNRLNELNASCQAIVAHVPEHDTFA 171
[Close]
BLAST of mRNA_C-linearis_contig9.16726.1 vs. uniprot
Match: UPI001F355C70 (GNAT family N-acetyltransferase n=1 Tax=Alkalihalobacillus berkeleyi TaxID=1069813 RepID=UPI001F355C70)

HSP 1 Score: 55.1 bits (131), Expect = 7.370e-6
Identity = 37/147 (25.17%), Postives = 65/147 (44.22%), Query Frame = 3 
Query:  273 IRRRVYCEEMGLTSGQEFTEMDPTSRHVLIQMGDAPLGYGRWRFETGPAXXXXXXXXXXXXXARQQQYAMVDRLCVLKEYRLRGFAKACLERIVHDVSTQTAQMETAVAAIVIPAPPNTFAHQKLGERGWTPQGDTVDFHGSPYVRM 713
            +R +V+ +E  +   +E  + +    H ++  G+  +G GR RF                     + YA V+R+C+LKEYR  G  K  ++++      +T   E++V  +V+ A   T A Q   + G+    D     G P+V M
Sbjct:   18 VRSKVFIDEQNVPEEEEIDQYENDCTHFVVYDGEKTIGAGRLRFV--------------------EDYAKVERVCILKEYRGSGVGKLLMQKM------ETVSSESSVNQLVLHA--QTQAEQFYSKLGYETYSDVFMDAGIPHVAM 136
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FR19_ECTSI5.500e-11278.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YLW0_9STRA1.430e-4043.58N-acetyltransferase domain-containing protein n=1 ... [more]
A0A7S2D796_9STRA5.700e-3032.43Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A4D9D8K0_9STRA4.790e-2738.71N-acetyltransferase domain-containing protein n=2 ... [more]
F0YI42_AURAN1.650e-2230.04Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3ZQB5_9STRA2.480e-2131.13Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A1V9Z3I7_9STRA3.510e-1630.89N-acetyltransferase domain-containing protein n=1 ... [more]
A0A067CC32_SAPPC1.350e-1428.31N-acetyltransferase domain-containing protein n=2 ... [more]
A0A8K1FFY7_PYTOL2.410e-1228.81Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI001F355C707.370e-625.17GNAT family N-acetyltransferase n=1 Tax=Alkalihalo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3389567..3395523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score334.0
Seed ortholog evalue6e-89
Seed eggNOG ortholog2880.D7FR19
Hectar predicted targeting categoryother localisation
EggNOG OGs2CBPC@1,2S5NA@2759
Ec32 ortholog descriptionAcyl-CoA N-acyltransferase
Ec32 orthologEc-09_002870.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size886
Cds size720
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16726.1prot_C-linearis_contig9.16726.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 3389623..3395413 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930762.2181044-UTR-C-linearis_contig9:3389566..33896221622930762.2181044-UTR-C-linearis_contig9:3389566..3389622Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3389567..3389622 +
1690881236.4223206-UTR-C-linearis_contig9:3389566..33896221690881236.4223206-UTR-C-linearis_contig9:3389566..3389622Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3389567..3389622 +
1622930762.3631065-UTR-C-linearis_contig9:3395413..33955231622930762.3631065-UTR-C-linearis_contig9:3395413..3395523Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3395414..3395523 +
1690881236.5210593-UTR-C-linearis_contig9:3395413..33955231690881236.5210593-UTR-C-linearis_contig9:3395413..3395523Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3395414..3395523 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930762.244879-CDS-C-linearis_contig9:3389622..33896851622930762.244879-CDS-C-linearis_contig9:3389622..3389685Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3389623..3389685 +
1690881236.4447925-CDS-C-linearis_contig9:3389622..33896851690881236.4447925-CDS-C-linearis_contig9:3389622..3389685Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3389623..3389685 +
1622930762.2625558-CDS-C-linearis_contig9:3392534..33926951622930762.2625558-CDS-C-linearis_contig9:3392534..3392695Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3392535..3392695 +
1690881236.4587648-CDS-C-linearis_contig9:3392534..33926951690881236.4587648-CDS-C-linearis_contig9:3392534..3392695Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3392535..3392695 +
1622930762.28123-CDS-C-linearis_contig9:3393383..33934691622930762.28123-CDS-C-linearis_contig9:3393383..3393469Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3393384..3393469 +
1690881236.470089-CDS-C-linearis_contig9:3393383..33934691690881236.470089-CDS-C-linearis_contig9:3393383..3393469Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3393384..3393469 +
1622930762.3059864-CDS-C-linearis_contig9:3394131..33943461622930762.3059864-CDS-C-linearis_contig9:3394131..3394346Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3394132..3394346 +
1690881236.4897194-CDS-C-linearis_contig9:3394131..33943461690881236.4897194-CDS-C-linearis_contig9:3394131..3394346Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3394132..3394346 +
1622930762.3268216-CDS-C-linearis_contig9:3394795..33948851622930762.3268216-CDS-C-linearis_contig9:3394795..3394885Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3394796..3394885 +
1690881236.5013506-CDS-C-linearis_contig9:3394795..33948851690881236.5013506-CDS-C-linearis_contig9:3394795..3394885Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3394796..3394885 +
1622930762.3464475-CDS-C-linearis_contig9:3395308..33954131622930762.3464475-CDS-C-linearis_contig9:3395308..3395413Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3395309..3395413 +
1690881236.5107937-CDS-C-linearis_contig9:3395308..33954131690881236.5107937-CDS-C-linearis_contig9:3395308..3395413Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3395309..3395413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16726.1

>prot_C-linearis_contig9.16726.1 ID=prot_C-linearis_contig9.16726.1|Name=mRNA_C-linearis_contig9.16726.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=240bp
MAEMQQEDPPMCAVCNHHHHQGEKCPICGHKGKGKIYQMLTDMPCEKGLN
FRFFDQRTNKQWFKGYWALARIIRRRVYCEEMGLTSGQEFTEMDPTSRHV
LIQMGDAPLGYGRWRFETGPAGPAGPAGQGGQGGARQQQYAMVDRLCVLK
EYRLRGFAKACLERIVHDVSTQTAQMETAVAAIVIPAPPNTFAHQKLGER
GWTPQGDTVDFHGSPYVRMCLFPSAQPATGGEVTSIAAT*
back to top

mRNA from alignment at C-linearis_contig9:3389567..3395523+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16726.1 ID=mRNA_C-linearis_contig9.16726.1|Name=mRNA_C-linearis_contig9.16726.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5957bp|location=Sequence derived from alignment at C-linearis_contig9:3389567..3395523+ (Chordaria linearis ClinC8C monoicous)
GATCGATTTTTAGGGCAACAAGCGAAGACAAAAACGGAGGGGGCTGGTGT
GGAGGTATGGCTGAAATGCAGCAGGAGGACCCGCCGATGTGTGCCGTGTG
CAATCACCACCATCACCAGGTGAGCCGAAGAGTGCACAAGAAGGGAAAGG
GGGCAAGCACCCGATACTGCTGTAGCGCTTTTGAACGCAACCCATATTTT
CTTTATGTAACAGAGCACCAGCCACGTATGATATGTGAGCTAGGGGAAAC
AGCATGGGAAGCATTTGCATTTGGTTGTCCCGTTCTGGTGGTTCACAGCC
ACTGTGTAAATCTGCCCTCAGAAATTTGGCTAGAAATCGCTCTTCAATAA
TGTGCTTGCATTGATCTCTCTTCCGCCCACACCCTGCGATCCTTGTTTGC
TTGTTTCCTGAATGCTTCACTGCGTGGGAGCGAGCGCACTACTACTTCTA
TTGAACACCGCAATGCCCATCCACGCCGAATGCGCTCCTGCTACTTGTGT
GTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGT
CTTGCGGCGATGCTGACCATTCCATCGTTGGCAGCAGCAGTAGCTTGTCT
CGCTCTCCCCCTGCTGTGCTTGTCTTCCTCGGTCACGAGGGTTTCACCGC
ATGTTGACATTTGGAAGGCAAGGAGTGAGGTGTCTTAAGCGCCTTCACCC
AAAACACGTGCCGAAAAATGAGGCGCTGGTGTTTCCCCCTCCCCGTTCCT
CTTTTGTTTCTCACCAGTCCTTATATCTCTTTTTTGGTTTGTTGGGTTGT
TTTTGTATTCATCATAAATTATCGTACACTAGTACAGCCGGTCGCCCCGG
TGGACTCGTGGTTTAACTTCGAACCCACTAGCAGCAAAGTCTGGAGTTCA
ATTCCAAGCAAAGGTGTTTCTTTTGCGACTTTGTGCAGGTGAAAGCGATA
ACATAGCTGAAAAAGCTCGTGAGTACCAAACTTCGACTTAGCACGTTGAC
GAGGGAAAGGGATGGCTGCACCCTTCTCGCGATAAAATCCAAGGCAAGCA
CCGCAGGAGGAAGGTGGGGCAAAAAAGAAACAGAAAAAGAACAAAAAAAG
CCTCAGTGTTTACCCCCTCCTGTCTGACCCCGGTTGGTTCTAGTTGTACA
GAAAAATACACTGAACAAGTGTAGTACTTTAAATACACCGCAACGTGTAG
CACACGTCTCGCCTTGATCGGAAAGGGACTGTCGCCAAAATAAATGGGAC
GAAAACACACACACAGTATCAACCAGAGCACAGAAAGGATGTGGGTTCAG
CAAGGAGGGGCTTCGTGTGAGATGGCGTGCGATGTACATACTCGAATCGA
TGTCCCAAAACACATAAAACCAGTGCAGCCCTCGCAAGGCGGCGAGACCA
CGTCTAGGCGCAACCCTTGTTTTCTTACGAGCTGTCTTTCCGCTAGAATC
GCTGCATTGTCGCGCCTTTCAGAGCCGTTCAGCCGGCCCATCGCAGGTGG
CCCCGTGTTTTCTCCGTGTTTGGGGGCTCAGTGAAAACGCACGCCCGACT
GATTTTGTGAGTCGCTTTTTTTTGAGCTACGTGAAAAATCACCGCACGGA
GAGCCTTGACTTTCCACGTTGTGGTGCCGCCGCTGCTGCTGTGGCTGTGC
TATGAGCTTAGTTATTCAGATTGAAGAGTTTGCTTGCTATTCTCTGAAGA
TTTGCCCTCCGCCGTTGTTTGTAGCGGTCGGGAACGCGGAGCTTTTCCTC
TCCAAAGGTGCAAAAATCGCTCTTCAGAAAAGTCTGTCAAACGTACGTTG
CACAGACAGTTTGGTATTCAGGAGATCAGCTAGCTCGCCCCCCACAAGCA
AAAACAGCTCAAGCCGCTTGGAGGGGCTACTGATATGGTGTGTAGGAGCC
GTCGCATGTCCTGGGAAGCAGCAGCAGACAGCGACAAGCCGCGCTGTGAA
GGTTTTCGTGAGCACGAGTTAGTTTTTTTCGGTCGCTTTTTCGGGAAATT
CGGGTGATTGTTTGGATCAACGCCCCGGAGCCTCACATCGTGTTTTTTGC
CCCATTGACAAAACGGACTTTACGCGAATCTAGCCCTGCTGTTTTGGGAG
AAACTGAATATCTAAGCTCATAGCACAGCAGCGGCGGCGGCACAATATTT
TCGAGCACGCAAGCGGTACTTTATTTGGTCGAAAAACTCCGCAACTCACC
GAAAAAAACTCCGAGCCCCTCTGGTTTTCAACGAACACCTCTGAAATTTC
GAAGAAAGACCATGTCGATCGGAGCTCCTACACTAATTTCAAGTGAGGCC
CCGTGCTGTTCAGCCGGGGGGTACGTTATTTGCTCCGAAAAGGCTGATGC
TGATTGTCGTATGTGCGATGGGCCGCCTTAAGCTTCCTCCTCTGAATCAT
GTGCAAAAGCGGGAGCAATCCCGCGCGCCAGTTCCTCTGTCCGTGAGACA
ACAGCTTCACTCCCGCCTTCATGTACCACTGCCTTGGAATCGCTTCCAAT
GATGCGGGGGCGCAAAGCGCCGAAACCCTTGTTAATATACCAACTAGGGA
ATCCACAACCTCATCTCGCGGTTAAAGTCTTGTTCCGTGACGTTTGCTCA
AAGTACATCCAGCGCTCTGCCTGCTGCCGCTCTCTCTCGCTGTTATCGTA
CAATACGGCAACCTCCCCACAGAACCTTAGCTTTGCGTTTTCCGGTGAGC
TACAAGTAGTCGACCCTTGTGTGGTTTCTGTTTTGTCCGCTACACCCCTG
CTACTTGGCGCACTTGGGGTGGTTTGGTAGTCATCCTGCTGTTCAACCTT
GTTCAGCAAAAAAAAGTGGTAAATTCTTCACGACGGGACCCATACCATGC
CCCCCCGGACAGGGAGAAATATAAATATTTGATCAATCTTGTTGGACCCA
AAACAAGTGTCAAAATAAGGTACTTTTGACGAGATCCTTACCATCCACAT
GCATCCCCCCCCGGATAGGGAGAAAAATGTCCCATCTGCGGGCACAAGGG
CAAGGGCAAGATCTACCAGATGCTGACGGACATGCCCTGCGAGAAGGGGC
TCAACTTCCGCTTCTTTGACCAGCGAACCAACAAGCAGTGGTTCAAGGGC
TACTGGGCCCTCGCCCGCATCATCAGAAGGTAAAGAGTGCTTTTATTTAT
TTATTTATCTTCCACTGGCGTACACAGCCGGTCGCCCCGGTGGACTAGTG
GTTTAACCTCGAACCCACTAGCAGCAAAGTCTGGAGTTCAATTCCAAGCA
AAGATGTTTCTTTTGCGATTTCGCAGGTGAAAGCGATAACATAGCTGAAA
AAGCTCGTGAGTACCAAACTTCGACTTAGCACGTTGACGAGGGAAAGGGA
TGGCTGCACCCTTCTCGCGATAAAATCCAAGGCAAGCACCGCAGGAGGAA
GGTGGGGCAAAAAAGAAACAGAAAAAGAAGAGAAAAGCGCCAAGGTGGGG
CAAAAAAGAAACAGAAAAAGAAGAGAAAAACGCCAGTGTTTACCCCTTCC
TGTGTGACCCCGGTTGGTTGTAGTTGTACAGAAAATTACACTGAACAAGT
GTAGTACTCTAAATACACCGCAACGTGTAGCTCGGCCCTCCGCGCGAGAT
TTGCTTGGACAGGGTTTACGTAGACGCCTTGTATTTGTGACTACAGCTGT
GTTCGAAACGCGACTCCATCTTCGAAGACGTGGAGCCGCCCGTATTTGCC
CCCGTCGAAAACCTTCGCTTGTCGCCGTTGTCTTTCCCTCATCTCCGGCG
TGTGTGTACATCTCTCTGCCTCTGCCTGTCTCTCTGCGTGTCGCCGTCTT
GCTGTCGCAACGCGCAGGAGAGTGTACTGCGAGGAGATGGGGCTGACGTC
GGGGCAAGAGTTCACAGAGATGGATCCCACCAGCAGACACGTGCTCATCC
AGAGTGAGTGCAAAACATGGTGCCACCCGCCCTCTTTGTCAAGGTGTTGA
CTTGTAGCTATGCCGCCGCCGGCGGAGTTTTTATCTTGTTTCTTGTGTTG
TTGTGCTGATAACTCCAAGGATCAAGTTGTTAGCTGGTCTAGTATGTATG
GCTCGACTGCTTTCTGTATCTAAGGACTTGGAGACAACCTGATTCAATGG
AGGGAGGTTTTGGGTGCGTGGCGCTACGAGTTTGACTGTGTGAGGGCTGT
TGCCAGCGGTACCCTCAGCCGCTACCACCCGACAGCACAGCACGGCTTGA
CAAAATACAGACAGCAGACAGCAGACAGCAGACAGCAGACAGCACCTTGC
TTTTTTGCTTTTGCATCACCTACTTTTCACCATCACTTGACCGTGATGAC
CTCTAAATAGCGTCGCGTGGAAACACCAACAGCAGCAACGCTAGTGCCCG
TCAATGTACCAAGCAGTAGCTTTGACCACAACAAGCAATCAGCACAGACC
CGGTCGGGCTCTTGGCCGCCGACACGGCCTGCTGCCGGAACCCACCTTCG
AGCATCCCAAACTGATGTGTGGGGGCACCGCCGATCGATATCGTAGGCCA
CCATAAATGAAAATTAAAAGTGAACCTAACCGTGCACCTTGTCTTTGTTC
CCGCCTTGACTGCAGTGGGAGATGCGCCCCTGGGGTACGGCCGATGGCGG
TTCGAGACAGGGCCGGCGGGGCCGGCGGGGCCGGCGGGGCAGGGGGGGCA
GGGGGGGGCACGGCAGCAGCAGTACGCGATGGTGGACCGATTATGCGTGT
TGAAGGAGTACCGGCTGCGAGGCTTCGCGAAGGCCTGCCTGGAGAGGATC
GTGCACGACGTGTCCACTCAGACGGCTCAGGTGAGAGATGAGATAGCAAA
GAGTCTCTTGACGGTTCCCGTGGCGGTACCGTTTGTGGGTTATTGTTGTT
TTGTTCGTTGTTGGTGAACGCCGGCCTCGCGGGTGGGTTTGTGTGAGCTA
TAGGGTTGTTTTGGTGGTGGAAGGTGGTGATTTTTGCTGTCGTTGTCGTG
TTGCTTTTTCTCACACCTGAGCTGAGTATCATGGCCTTGGGTTGCTCGTG
TGGCAAAGTCACTCTGCAAAAGTGTTGCTCTTTGAGGGGAGGTTCTTTAT
TTGATGCCGTTTTGTTTAATAAAAGTGTTCCTCAAAAGGGCATGCGCCTT
GCTCGGATCTCGCGTGCATCTTCGCGTTTTCACCACGTGATTTTGTTCTC
TCATGTGCGCGAGGCAAGCTTTCCCCACGTCACAGCGTCTTCCCCTCCCC
CGTTCCCACCACGTGCGTGGTCTTGTTAGATGGAAACGGCGGTTGCAGCG
ATCGTGATCCCAGCTCCACCAAACACTTTTGCGCATCAGAAGCTAGGTGA
ACGAGGGTGGACACCACAGGTACGATACGAGAAAAGAAATGCCAGGGGTC
AAGTGTACAGCAGTAGTCGTGTTCTTTCTTTTGCTTTGCGGGGGGGTCCG
TGACGTTGCACTATTTTGTCACGAATGGCAGCCGCCGTTGACCTCGCATT
TCTGTCTGGGACAGAAGAGCGCCGTGGTCACTTCTAGCAGATGTAGCACC
ACGACATGTGTGGTCAGCTTGTCGGAAGCAAGCAGGTGTTGGGGGCCGGG
GAGAGAAAGCACGCAAGGCTCTGAATCACGCAAACTCTATTTTTTGGCTT
GGCTTACGCCATAGGCCATAGGCCGCGGCAATCCTTGTGTTCTTAACCGC
AACCCTCGTCTTCCTCGATGCGTTGCCCGTCGTGTTGTACCCCCTCCCGA
AAATTAAAAACCTCGCACGCGCACCCCCCCCCGCGCGCACAGGGAGATAC
GGTGGACTTTCACGGCTCGCCGTACGTCCGCATGTGTCTCTTCCCGTCGG
CACAGCCGGCGACGGGGGGGGAAGTGACATCAATAGCCGCCACCTGAAGA
TGCCACAACCCGCCGGTATCTCTCATCTAAAGATATGCCGTGCTGGTGGA
AGAGCCACCTATGATGAAGTACCATAAGTTTACACGCCTGTGCTGGTTGT
CAGGCAA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig9:3389567..3395523+

>mRNA_C-linearis_contig9.16726.1 ID=mRNA_C-linearis_contig9.16726.1|Name=mRNA_C-linearis_contig9.16726.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1440bp|location=Sequence derived from alignment at C-linearis_contig9:3389567..3395523+ (Chordaria linearis ClinC8C monoicous)
ATGGCTGAAATGCAGCAGGAGGACCCGCCGATGTGTGCCGTGTGCAATCA
CCACCATCACCAGATGGCTGAAATGCAGCAGGAGGACCCGCCGATGTGTG
CCGTGTGCAATCACCACCATCACCAGGGAGAAAAATGTCCCATCTGCGGG
CACAAGGGCAAGGGCAAGATCTACCAGATGCTGACGGACATGCCCTGCGA
GAAGGGGCTCAACTTCCGCTTCTTTGACCAGCGAACCAACAAGCAGTGGT
TCAAGGGCTACTGGGCCCTCGCCCGCATCATCAGAAGGGAGAAAAATGTC
CCATCTGCGGGCACAAGGGCAAGGGCAAGATCTACCAGATGCTGACGGAC
ATGCCCTGCGAGAAGGGGCTCAACTTCCGCTTCTTTGACCAGCGAACCAA
CAAGCAGTGGTTCAAGGGCTACTGGGCCCTCGCCCGCATCATCAGAAGGA
GAGTGTACTGCGAGGAGATGGGGCTGACGTCGGGGCAAGAGTTCACAGAG
ATGGATCCCACCAGCAGACACGTGCTCATCCAGAGAGAGTGTACTGCGAG
GAGATGGGGCTGACGTCGGGGCAAGAGTTCACAGAGATGGATCCCACCAG
CAGACACGTGCTCATCCAGATGGGAGATGCGCCCCTGGGGTACGGCCGAT
GGCGGTTCGAGACAGGGCCGGCGGGGCCGGCGGGGCCGGCGGGGCAGGGG
GGGCAGGGGGGGGCACGGCAGCAGCAGTACGCGATGGTGGACCGATTATG
CGTGTTGAAGGAGTACCGGCTGCGAGGCTTCGCGAAGGCCTGCCTGGAGA
GGATCGTGCACGACGTGTCCACTCAGACGGCTCAGTGGGAGATGCGCCCC
TGGGGTACGGCCGATGGCGGTTCGAGACAGGGCCGGCGGGGCCGGCGGGG
CCGGCGGGGCAGGGGGGGCAGGGGGGGGCACGGCAGCAGCAGTACGCGAT
GGTGGACCGATTATGCGTGTTGAAGGAGTACCGGCTGCGAGGCTTCGCGA
AGGCCTGCCTGGAGAGGATCGTGCACGACGTGTCCACTCAGACGGCTCAG
ATGGAAACGGCGGTTGCAGCGATCGTGATCCCAGCTCCACCAAACACTTT
TGCGCATCAGAAGCTAGGTGAACGAGGGTGGACACCACAGATGGAAACGG
CGGTTGCAGCGATCGTGATCCCAGCTCCACCAAACACTTTTGCGCATCAG
AAGCTAGGTGAACGAGGGTGGACACCACAGGGAGATACGGTGGACTTTCA
CGGCTCGCCGTACGTCCGCATGTGTCTCTTCCCGTCGGCACAGCCGGCGA
CGGGGGGGGAAGTGACATCAATAGCCGCCACCTGAGGAGATACGGTGGAC
TTTCACGGCTCGCCGTACGTCCGCATGTGTCTCTTCCCGTCGGCACAGCC
GGCGACGGGGGGGGAAGTGACATCAATAGCCGCCACCTGA
back to top