mRNA_C-linearis_contig9.16716.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16716.1 vs. uniprot
Match: D8LNS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS1_ECTSI) HSP 1 Score: 302 bits (773), Expect = 3.090e-93 Identity = 140/189 (74.07%), Postives = 157/189 (83.07%), Query Frame = 3
Query: 1272 GRISLGCFKDDRNDRIMDDRALVDYSMTTELCELTCAGSSYFSTQYGRECWCGPADTDYVQHGGSTGCTYECPGNPDETCGGFDAANVYAYATT--TSSSSYLGCFKDDRDRIMELALTDSSSMTKEMCEAECTGSTYFGLQYERECWCGDQDTDLLKHGESTACSYECPGDPDQTCGGGWAMSVYEFN 1832
G +SLGCF DD +DRIMDDRALVD SMTTELCELTCAGSSYFSTQYGRECWCGPA TDY +HG ST CTYECPGNPDETCGGF AA+ YAY+T T + SY+GCF+DD+DRIMELALT+SSSMT E+CE C GS YF QY RECWCG TD KHGEST C+YECPG+PD+TCGG +A SVY ++
Sbjct: 27 GPLSLGCFNDDGDDRIMDDRALVDTSMTTELCELTCAGSSYFSTQYGRECWCGPAGTDYEKHGESTECTYECPGNPDETCGGFYAASAYAYSTVEPTPTFSYVGCFQDDQDRIMELALTESSSMTTELCELTCAGSYYFSTQYGRECWCGPAGTDYEKHGESTECTYECPGNPDETCGGFYAASVYAYS 215
BLAST of mRNA_C-linearis_contig9.16716.1 vs. uniprot
Match: D7FTD7_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD7_ECTSI) HSP 1 Score: 297 bits (761), Expect = 6.150e-91 Identity = 140/201 (69.65%), Postives = 167/201 (83.08%), Query Frame = 3
Query: 1236 TPAPTTPGPTLDGRISLGCFKDDRNDRIMDDRALVDYSMTTELCELTCAGSSYFSTQYGRECWCGPADTDYVQHGGSTGCTYECPGNPDETCGGFDAANVYAYAT-TTSSSSYLGCFKDDR-DRIMELALTDSSSMTKEMCEAECTGSTYFGLQYERECWCGDQDTDLLKHGESTACSYECPGDPDQTCGGGWAMSVYEFN 1832
TPAP TP PT+DG ++LGC+ DDR DRIMDD AL DYSMTTELCELTC GS+YF+TQYGRECWCG AD DY HG ST CTY C G+ D+TCGGFDAANVY+Y +T+ S+++GC++D+ RIMELALTDSSSM+ EMCEA+C G+TYFGLQY REC+CG TDLL+HGES+AC+YECPGD DQ CGG +AMSVY ++
Sbjct: 192 TPAP-TPAPTVDGPLALGCYGDDREDRIMDDLALSDYSMTTELCELTCLGSTYFATQYGRECWCGSADMDYALHGESTDCTYACAGDADQTCGGFDAANVYSYTDESTAISAFVGCYQDESGSRIMELALTDSSSMSMEMCEAKCRGNTYFGLQYGRECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVYSYS 391
BLAST of mRNA_C-linearis_contig9.16716.1 vs. uniprot
Match: D7FRS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS2_ECTSI) HSP 1 Score: 291 bits (746), Expect = 3.680e-87 Identity = 140/206 (67.96%), Postives = 166/206 (80.58%), Query Frame = 3
Query: 1230 EPTPAPTTPGPTLD--GRISLGCFKDDRNDRIMDDRALVDYSMTTELCELTCAGSSYFSTQYGRECWCGPADTDYVQHGGSTGCTYECPGNPDETCGGFDAANVYAYA--TTTSSSSYLGCFKDDRD-RIMELALTDSSSMTKEMCEAECTGSTYFGLQYERECWCGDQDTDLLKHGESTACSYECPGDPDQTCGGGWAMSVYEFN 1832
E TP+P TP PT D G +SLGC++DDR +RIMDD AL D+SMTTELCE TC G+++F+TQYGRECWCG A DY HG ST CTY C G+ D+TCGGFDAANVY Y S+S+++GC++D+ D RIMELALTDSSSMTKEMCEAECTGSTYFG+QY REC+CG TDLL+HGESTAC YECPGD D+ CGG +AMSVY ++
Sbjct: 310 ESTPSP-TPSPTADESGPLSLGCYEDDRENRIMDDLALSDFSMTTELCEQTCLGNTFFATQYGRECWCGSAGADYTLHGESTDCTYACAGDADQTCGGFDAANVYLYTGDDALSTSTFVGCYQDESDARIMELALTDSSSMTKEMCEAECTGSTYFGMQYGRECFCGGSSTDLLQHGESTACDYECPGDSDELCGGFYAMSVYSYS 514
BLAST of mRNA_C-linearis_contig9.16716.1 vs. uniprot
Match: D7FUE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE6_ECTSI) HSP 1 Score: 294 bits (753), Expect = 4.300e-85 Identity = 138/206 (66.99%), Postives = 167/206 (81.07%), Query Frame = 3
Query: 1221 NTPEPTPAPTTPGPTLDGRISLGCFKDDRNDRIMDDRALVDYSMTTELCELTCAGSSYFSTQYGRECWCGPADTDYVQHGGSTGCTYECPGNPDETCGGFDAANVYAYAT-TTSSSSYLGCFKDDRD-RIMELALTDSSSMTKEMCEAECTGSTYFGLQYERECWCGDQDTDLLKHGESTACSYECPGDPDQTCGGGWAMSVYEFN 1832
+TP PTP+P GP ++LGC++DDR DRIMDD AL DYSMTTELCE TC G++YF+TQYGRECWCG A +Y HG ST CTY C G+ D+TCGGFDAANVY Y +T +SS++GC++D+ D RIMELALTDSSSMTKEMCEAECTG+T+FG+QY REC+CG TDLL+HGES+AC+YECPGD DQ CGG +AMSVY ++
Sbjct: 618 STPNPTPSPAATGP-----LALGCYEDDREDRIMDDLALSDYSMTTELCEQTCLGNTYFATQYGRECWCGSAGVEYALHGESTDCTYACAGDADQTCGGFDAANVYRYTDESTPTSSFVGCYQDESDARIMELALTDSSSMTKEMCEAECTGNTFFGMQYGRECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVYSYS 818
BLAST of mRNA_C-linearis_contig9.16716.1 vs. uniprot
Match: D8LEL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL0_ECTSI) HSP 1 Score: 271 bits (694), Expect = 1.390e-82 Identity = 124/186 (66.67%), Postives = 148/186 (79.57%), Query Frame = 3
Query: 1278 ISLGCFKDDRNDRIMDDRALVDYSMTTELCELTCAGSSYFSTQYGRECWCGPADTDYVQHGGSTGCTYECPGNPDETCGGFDAANVYAYATTTSSSSYLGCFKDDRD-RIMELALTDSSSMTKEMCEAECTGSTYFGLQYERECWCGDQDTDLLKHGESTACSYECPGDPDQTCGGGWAMSVYEFN 1832
++LGC+ DDR RIMDD L D SMTTELCELTC GS+YF+TQYGRECWCG DY HG ST CTY C G+ D+ CGGFDAANVY + TS+SS +GC++D+ D RIME ALTD+SSMT EMCEAEC+G+TYFG+QY EC+CG + TDLL+HGESTAC YECPGD +Q CGG +AMSVY ++
Sbjct: 94 VALGCYGDDREARIMDDLVLSDSSMTTELCELTCLGSTYFATQYGRECWCGSDGADYALHGESTECTYPCSGDADQLCGGFDAANVYLFTGETSTSSLVGCYQDESDARIMEFALTDTSSMTMEMCEAECSGNTYFGMQYGTECFCGGESTDLLQHGESTACDYECPGDSEQVCGGFYAMSVYSYS 279
BLAST of mRNA_C-linearis_contig9.16716.1 vs. uniprot
Match: D7FRS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS1_ECTSI) HSP 1 Score: 286 bits (731), Expect = 3.950e-81 Identity = 137/206 (66.50%), Postives = 163/206 (79.13%), Query Frame = 3
Query: 1230 EPTPAPTTPGPTLDGR--ISLGCFKDDRNDRIMDDRALVDYSMTTELCELTCAGSSYFSTQYGRECWCGPADTDYVQHGGSTGCTYECPGNPDETCGGFDAANVYAYA--TTTSSSSYLGCFKDDRD-RIMELALTDSSSMTKEMCEAECTGSTYFGLQYERECWCGDQDTDLLKHGESTACSYECPGDPDQTCGGGWAMSVYEFN 1832
E TP+P TP PT D +SLGC++DDR DRIMDD AL D +MTTELCE TC G++YF+TQYGRECWCG A DY+ HG S CTY C G+ D+TCGGFDAANVY Y ++SS++GC++D+ D RIMELALTDSSSMTKE CEAECTG+TYFG+QY REC+CG TDLL+HGEST+C YECPGD DQ CGG +AMSVY ++
Sbjct: 725 ESTPSP-TPSPTADDASPLSLGCYEDDREDRIMDDLALSDNAMTTELCEQTCLGNTYFATQYGRECWCGSAGADYILHGESADCTYACAGDADQTCGGFDAANVYLYTGDDVPTTSSFVGCYQDESDARIMELALTDSSSMTKERCEAECTGNTYFGMQYGRECFCGGSSTDLLQHGESTSCDYECPGDSDQVCGGFYAMSVYSYS 929
BLAST of mRNA_C-linearis_contig9.16716.1 vs. uniprot
Match: D7FUE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE8_ECTSI) HSP 1 Score: 244 bits (623), Expect = 8.790e-74 Identity = 112/162 (69.14%), Postives = 133/162 (82.10%), Query Frame = 3
Query: 1350 MTTELCELTCAGSSYFSTQYGRECWCGPADTDYVQHGGSTGCTYECPGNPDETCGGFDAANVYAYAT-TTSSSSYLGCFKDDRD-RIMELALTDSSSMTKEMCEAECTGSTYFGLQYERECWCGDQDTDLLKHGESTACSYECPGDPDQTCGGGWAMSVYEF 1829
MTTELCELTC GS+YF+TQYGRECWCG A DY HG ST CTY C GN D+TCGGFDAANVY Y +T +SS++GC++D+ D R+MELALTDSSSMTKEMCEAECTG+ YFG+QY EC+CG T+LL++GES+AC YECPGD +Q CGG +AMSVY +
Sbjct: 1 MTTELCELTCLGSTYFATQYGRECWCGSAGMDYALHGESTDCTYGCAGNADQTCGGFDAANVYRYTNESTPTSSFVGCYQDESDARMMELALTDSSSMTKEMCEAECTGNRYFGMQYGSECFCGGSSTNLLENGESSACDYECPGDSEQECGGFYAMSVYSY 162
BLAST of mRNA_C-linearis_contig9.16716.1 vs. uniprot
Match: D8LEK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK9_ECTSI) HSP 1 Score: 234 bits (597), Expect = 3.970e-66 Identity = 113/196 (57.65%), Postives = 132/196 (67.35%), Query Frame = 3
Query: 1278 ISLGCFKDDRNDRIMDDRALVDYSMTTELCELTCAGSSYFSTQYGRECWCGPADTDYVQHGGSTGCTYECPGNPDETCGGFDAANVYAYATTTSSSSY-----------LGCFKDD-RDRIMELALTDSSSMTKEMCEAECTGSTYFGLQYERECWCGDQDTDLLKHGESTACSYECPGDPDQTCGGGWAMSVYEF 1829
++LGC++DD DRIMD+ AL D SMTTELCELTC GS+YF+TQY RECWCG AD DY HG STGCTY C G+ +TCGGF+AANVY Y ++ S LGC+ DD DRIM+ + SSMT E+CE C GSTYF QY RECWCG D HGEST C+Y C GD DQTCGG A +VY +
Sbjct: 198 LALGCYEDDPEDRIMDNLALSDSSMTTELCELTCVGSTYFATQYRRECWCGSADADYALHGESTGCTYACSGDTSQTCGGFNAANVYLYPDDSTPSPTPSPIQEGPSPALGCYADDPEDRIMDDLVLSDSSMTTELCELTCEGSTYFATQYGRECWCGSAGADYALHGESTDCTYACSGDTDQTCGGFDAANVYRY 393
BLAST of mRNA_C-linearis_contig9.16716.1 vs. uniprot
Match: D7FTD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD8_ECTSI) HSP 1 Score: 210 bits (535), Expect = 4.000e-57 Identity = 139/342 (40.64%), Postives = 179/342 (52.34%), Query Frame = 3
Query: 828 DRECSTVPSPLGRIRGRRLQSSDYGGFYT-----TDVYTTLGNYPICSQDVCCEGGPTPAPAXXXXXXXXXXXXXXXXFQECVQNTQGYLQDGVAVEAYCADVCDPSPCSDREVCELYARPCIPDTVCPPLAVCTPNTPEPTPAPTTPGPTLDGRISLGCFKDDRNDRIMDDRALVDYSMTTELCELTCAGSSYFSTQYGRECWCGPADTDYVQHGGSTGCTYECPGNPDETCGGFDAANVYAYATTTS-SSSYLGCFKDDRD-RIMELALTDSSSMTKEMCEAECTGSTYFGLQYERECWCGDQDTDLLKHGESTACSYECPGDPDQTCGGGWAMSVYEFN 1832
+ E S + +P R+R R LQ+SDY TDV G+ C D G A A C +NT + DG+ SPC+D E R + VC +G +++GC+ DDR DRIMDD AL DYSMTTE+ LT A +Y ++ ++H G+ D+TCGGFDAANVY Y + +SS++GC++D+ D RIMELALTDSSSMT E+CEAECTG+TYFGLQY REC+CG TDLL+HGES+AC+YECPGD DQ CGG +AMSVY ++
Sbjct: 187 EAEESLLTTPSRRLRSRHLQTSDYTALVIPDAIPTDVEELCGDNTECIFDAIVAGLDVGA-ATLEAAEEFHTEVQAAGGDVCEENT--FSSDGL------------SPCTDCPEGETSGRGAV---------VC------------------EGSLAVGCYGDDREDRIMDDLALSDYSMTTEVL-LTSAVRAYMPWKH------------LLRH------PVRARGDADQTCGGFDAANVYQYTDGNAPTSSFVGCYQDESDARIMELALTDSSSMTMEICEAECTGNTYFGLQYGRECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVYSYS 467
BLAST of mRNA_C-linearis_contig9.16716.1 vs. uniprot
Match: A0A6H5JX48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX48_9PHAE) HSP 1 Score: 211 bits (537), Expect = 4.780e-55 Identity = 129/323 (39.94%), Postives = 155/323 (47.99%), Query Frame = 3
Query: 1221 NTPEPTPAPTTPGPTLDGRISLGCFKDDRNDRIMDDRALVDYSMTTELCELTCAGSSYFSTQYGRECWCGPADTDYVQHGGSTGCTYECPGNPDETCGGFDAANVYAYA-----------TTTSSSSYLGCFKDDRD-RIM-ELALTDSS---------------------------------------------------------------------------------------SMTKEMCEAECTGSTYFGLQYER-------------------ECWCGDQDTDLLKHGESTACSYECPGDPDQTCGGGWAMSVYEFN 1832
+TP PTP+PT ++LGC++DDR DRIMD+ L D SMTTELCELTC G++YF+TQYG ECWCG A DY HG ST CTY C G+ D+TCGG+DAANVY Y T S LGC++DDR+ RIM EL L+DSS SMT E+CE C GSTYF QY + EC+CG + TDLL+HGESTAC+YECPGD DQ CGG +AMSVY ++
Sbjct: 455 STPNPTPSPTEAA----SFVALGCYEDDREDRIMDELVLSDPSMTTELCELTCLGNTYFATQYGSECWCGSAGADYAVHGESTICTYACSGDADQTCGGYDAANVYRYTAEGTPSPTPSPTEAGSHLALGCYEDDREARIMDELVLSDSSMTTECWCGSAGADYALHGESTDCTYPCAGDADQMCGGFDAANVYRYTDGSTPSPTPSPTEAGSHLALGCYEDDREDRIMDELVLSDSSMTTELCELTCVGSTYFATQYGQXXXXXXXXXXXXXXXXXXTECFCGGESTDLLQHGESTACNYECPGDSDQVCGGFYAMSVYSYS 773 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16716.1 >prot_C-linearis_contig9.16716.1 ID=prot_C-linearis_contig9.16716.1|Name=mRNA_C-linearis_contig9.16716.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=575bp MSVGKLIVGAALLFLPHGINACKCLARPTVCEGVDNAHVVVRAVLVSSVDback to top mRNA from alignment at C-linearis_contig9:3336326..3343276- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16716.1 ID=mRNA_C-linearis_contig9.16716.1|Name=mRNA_C-linearis_contig9.16716.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6951bp|location=Sequence derived from alignment at C-linearis_contig9:3336326..3343276- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:3336326..3343276- >mRNA_C-linearis_contig9.16716.1 ID=mRNA_C-linearis_contig9.16716.1|Name=mRNA_C-linearis_contig9.16716.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3450bp|location=Sequence derived from alignment at C-linearis_contig9:3336326..3343276- (Chordaria linearis ClinC8C monoicous)back to top |