mRNA_C-linearis_contig9.16712.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16712.1 vs. uniprot
Match: A0A6H5JJJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ8_9PHAE) HSP 1 Score: 554 bits (1427), Expect = 4.720e-163 Identity = 670/1450 (46.21%), Postives = 783/1450 (54.00%), Query Frame = 1
Query: 2086 VAVGALGPGSVKGSMSASGIPEELVAEKGEERLVQEAVCALSPCPDGPDSVTVTIGGDGD--SARMLL---SALQG---------RRRLADIADAVFEVPTPAGAPTGTSTEPLTGSKQAAALFNQAADPDAVAAAAAAFGIPAENLDFGTLEYFEGLAFSISNEFGFVAEPQAEPQGEKEASTRATVVVAXXXXSXXXXXSCXVFFLMKHHVEK-RHGRIAGGFATRSPPRK-------SAKLSTIDEERGQAVQVGKSGTQAYKSMGPSPHSTLVRFSSGDHPDGARGGSGTTKGRLSSSGRRPKTVPHTQSMGSEESSTVSDKFTYSNPMHKGGEIKNTGSPNEYGDDLAQHYYEGEGPTAMSDVSSELPHDKTSNPLFSSDLYRTGLSAASPTSAVEAARXXXXXXXXXXXXXXXX------------------SSGYHAESGSGHDSYSDW--------RSGASRSGTLEPMSPASFDSEPTDDTDGASSFGSGS-----YQSRGSSRXXXXXXXRGMSLMSETSSRMPFGLSPVAERNGDKGESSG----SSSTTGGASTVYHARGGAGAPTSGIPGLGSYGGXXXXXXXSYSTVSGM--------DDDAESMFRPLSPGSVTRPLQPLLAQQSPLSSASAFDSRSNSLXXXXXXXXXAS----PKP-----VSSVAGAGFGQTMLQKGIPTESLKAIKVAHGG-DAEREAVREXXRRQRRKIARSMSYESTSSSYQLSPMAEHPEHEDTAAGLSQGDMGSHG-SKIIVSRSASMSPHTLARRQNERQHQYGSSGSDLRSVGALSEVPYAGGGGXXXXXXXIXGGSWGGARGPSRATS---SYYSEAGLTSASTLTSFNEESTVGS-PGAGVGVRLWMYSRATPNLMVADAEVGSAIFQVSDTASDASADAAGGRG----SGGLAASLDRRVKSASVAPSPTYGPGVFQKVASKHAAGGGG---DGSVDEDRDEFYDASATP----------------------QDAQXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGSRAPKGLRFSSRGRAMGXXXXXXXXXXXXXXXXXXXXXGVKTGG-DVAGKQKPLSMLSMSKSSSESDSPADGELGALPPDYQSLEYSTGSXXXXXXXXXXXXXXXXXXXXX------------GAGALDETSLKAAQECRDRAVEAGKAAGXXXXATGEAKTEAQLMAXXXXXXXKATKGRQVNDDVRRKAIQAGXXXXXXXXXXDGPSYGGGGGGRWNAGSSVGEVKSVLKTAGSFRNT-EKRRSVSFADGSSSEFDTRVSRSDD--DHGVGGMRGFRQQHLADPGQPSGSYRRQESDESSGFSNESLSPSVLASSMTGGASH--QASFDTVSTYSAASVASFATTATSTNFSTAGRGATLG----------------------SESSQSDSDVDWPTSTQRNPG 5988
V VG LGP SVKGS+SASG+P+ LV EKGEE L+QEAVCAL C DG +SV V G+ AR LL S+ G RRRLA++ D FEVPTP P + EPLTGSKQAA LFN+AAD ++ A+A GI +L FG L YFEG F+ S++F QAE +G AST ATV+VA + SC + KH EK GR +LSTI+EE+G ++VGKS A SMGPSPH +L+R +S + G+ T R SSSGR PK V T S+GSE +S VS+KF Y+NPMHK K PNEYGDDLAQHY EGE MSD+SSELPHDKT NPLFSSD R G +SPTS EAARXXXXXXXXXXXXXXXX SG E S S SD +S S S ++ +SFDS+ D G GS SRGS +S+ SETSSRMPFGLSPVAER +GES G SSSTTGG STVY AR GA P G+P SYGG SYS S AES+FRP SPGSV+RPLQPLLAQQSP+S S F S+SNS AS PK A + L+KGI ESLKAIK+ GG DAEREAV XX K+ARS+S E P E E TAA + + ++GS G KI S +S+SP LAR+ NE + +YGSS S+L+ GG RG A+S S S+A LTSASTL+SFN ES V + P A + +RA+P+ A G +F SDT SDASADAA G G S GLA++LDRRVKSA+VAPSP K + AG G + +VDE DEFYDA++T XXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXX +T + + S LS+S+SSSE+ S + +QS T XXXXXXXXXXXXXXXXXX G LD+ S+ AA+ECRDRA+EAG AA A+GE TEAQLMA KATKGR V DDVRRKAIQAG XXXXXXXX D GGG RW+ G+S E+KS LK SFR+T EK RSVSFA S + +GG+R QHLADP +PSGSYRR ESD SS S ESLSPS SS TGG + QASFDT T+SA S++S+AT T++ GR S S S+SD DWP S QR G
Sbjct: 82 VVVGGLGPASVKGSISASGVPDALVEEKGEEALIQEAVCALVECVDGLESVIV---GEASVRRARSLLTFSSSRNGKKGFRIGPRRRRLAELEDVQFEVPTPTSVPVESEAEPLTGSKQAADLFNKAADESSLTGVASALGIDVADLSFGDLAYFEGDEFTFSSDFD-----QAEDEG---ASTWATVLVAFILVTAMLLCSCCACLVTKHATEKGMAGRXXXXXXXXXXXXXXXXXAVMQERLSTIEEEQG--LRVGKSEMTASHSMGPSPHHSLIRSTSQE------AGAVT---RSSSSGR-PKIVHRTHSIGSETNSAVSEKFVYTNPMHK--HEKKLSPPNEYGDDLAQHY-EGELGD-MSDISSELPHDKTDNPLFSSDSNRDG-GGSSPTSVAEAARXXXXXXXXXXXXXXXXXXXXXXXXXXCXXXXHLAESGAIVEVDSHGASMSDAASTSLASSQSNTSESPLIDQAYSSSFDSD-VDQRGGGEVAAEGSPLVGGRNSRGSGGV--------LSIASETSSRMPFGLSPVAERTDSRGESPGLTTNSSSTTGGVSTVYLARAGADGPR-GVPW--SYGGPDGRG--SYSMASDAAXXXXXXXXXXAESVFRPPSPGSVSRPLQPLLAQQSPMSCVSGFTSKSNSFAMSSRSSSMASSFASPKAGXXXXXXXAAASRLPPVGLRKGISNESLKAIKITSGGGDAEREAVXXXXXXXXXKVARSLSQED--------PRTE-AGSEGTAA-MGEDELGSLGVEKIPKSSVSSLSP--LARQHNEWRARYGSSQSELKFP---------------------EGGXXXXXRGSLAASSRMASGMSDARLTSASTLSSFNGESIVSAMPSADARAQSSGATRASPD--PASPAGGGGVFGQSDTGSDASADAAAGHGDASGSKGLASALDRRVKSAAVAPSP--------KRSRSGRAGTGATKSESTVDEGGDEFYDATSTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRTRAPQMTAGTRMSSSLSLSRSSSEASS-LPSPVFVPSTSFQSHHAFTSGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXGVLDGTRGLDQASIVAAEECRDRAIEAGTAAAGAAVASGEVTTEAQLMAAGAVAAAKATKGRAVPDDVRRKAIQAGAXXXXXXXXADVGPTGGGVSNRWSTGTSAVELKSALKKEPSFRSTAEKPRSVSFAYDSXXXXXXXXXXXXXXXSNRIGGLR----QHLADPSRPSGSYRRMESDSSS-LSGESLSPSFRGSSATGGGDNVSQASFDTNITFSAVSMSSYATATTTSTAYGGGRVXXXXXXXXXXXXXAYSQRSSYSFRHDSSGSCSESDTDWPPSYQRGAG 1440
BLAST of mRNA_C-linearis_contig9.16712.1 vs. uniprot
Match: D8LSN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN4_ECTSI) HSP 1 Score: 495 bits (1274), Expect = 1.000e-141 Identity = 589/1309 (45.00%), Postives = 690/1309 (52.71%), Query Frame = 1
Query: 2263 DSARMLLSALQGRRRLADIADAVFEVPTPAGAPTGTSTEPLTGSKQAAALFNQAADPDAVAAAAAAFGIPAENLDFGTLEYFEGLAFSISNEFGFVAEPQAEPQGEKEASTRATVVVAXXXXSXXXXXSCXVFFLMKHHVEK----RHGRIAGGFATRSPPRKSA----KLSTIDEERGQAVQVGKSGTQAYKSMGPSPHSTLVRFSSGDHPDGARGGSGTTKGRLSSSGRRPKTVPHTQSMGSEESSTVSDKFTYSNPMHKGGEIKNTGSPNEYGDDLAQHYYEGEGPTAMSDVSSELPHDKTSNPLFSSDLYRTGLSAASPTSAVEAARXXXXXXXXXXXXXXXXS--SGYHAESGSGHDSYSDWRSGASRSGTLEPMSPASFDSEPTDDTDGASSF-------GSGSYQSRGSSRXXXXXXXRG----MSLMSETSSRMPFGLSPVAERNGDKGESSG----SSSTTGGASTVYHARGGAGAPT------SGIPGLGSYGGXXXXXXXSYSTVSGMDDDAESMFRPLSPGSVTRPLQPLLAQQSPLSSASAFDSRSNSLXXXXXXXXXAS----PKPVSSVAGAG-FGQTMLQKGIPTESLKAIKVAHGG-DAEREAVREXXRRQRRKIARSMSYESTSSSYQLSPMAEHPEHEDTAAGLSQGDMGSHG-SKIIVSRSASMSPHTLARRQNERQHQYGSSGSDLRSVGALSEVPYAGGGGXXXXXXXIXGGSWGGARGPSRATSSYYSEAGLTSASTLTSFNEESTVGS-PGAGVGVRLWMYSRATPNLMVADAEVGSAIFQVSDTASDASADAAGGRG----SGGLAASLDRRVKSASVAPSPTYG-PGVFQKVASKHAAGGGGDGSVDEDRDEFYDASATPQDAQXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGSRAPKGLRFSSRGRAMGXXXXXXXXXXXXXXXXXXXXXGVKTGGDVAGKQKPLSMLSMSKSSSESDSPADGELGALPPDYQSLEYSTGSXXXXXXXXXXXXXXXXXXXXXGAGALDETSLKAAQECRDRAVEAGKAAGXXXXATGEAKTEAQLMAXXXXXXXKATKGRQVNDDVRRKAIQAGXXXXXXXXXXD-GPSYGGGGGGRWNAGSSVGEVKSVLKTAGSFRNT-EKRRSVSFA-DGSSSEFDTRVSRSDDDHGVGGMRGFRQQHLADPGQPSGSYRRQESDESSGFSNESLSPSVLASSMTGGASH--QASFDTVSTYSAASVASFAT-TATSTNFSTAGRGATLGSES-----------------SQSDSDVDWPTSTQRNPG 5988
D L + RRRLA+ D FEVPTP + PLTGSKQAA LFN+AAD ++ A+A GI +L+FG L YFEG F+ S++F QAE +G AST ATV+VA + SC + KH EK R RKSA +LSTI+EE+G + VGKS A SMGPSPH LVR +S + R SSSG+ PK+V T S+GSE SS VS+KF Y+NPMHK K PNEYGDDLA+HY EGE MSD+SSELPH KT NPLFSS+ R XXXXXXXXXXXXXXXX SG+ ES + + S S + + T S ++ P D +SSF G G + GSS RG +S+ SETSSRMPFGLSPVAER +GES G SSSTTGGASTVY AR GA P SG G GSY + DDDAES+FRP SPGSV+RPLQPLLAQQSP+S S F S+SNS AS PK A A L+KGI ESLKAIK+A GG DAEREAV XX +ARS+S E + E TAA + ++GS G KI S +S+SP LAR+ NE + +YGSS S+L+ S +S S+A LTSASTL+SFN ES V + P R +RA+P+ A A G ++F SD SDASADAA G G S GLA++LDRRVKSA+VAPSPT+ G A+K + +VDED DEFYDA++T A+ XXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXGV L+ + G LD+ S+ AA+ECRDRA+EAG AA A+GE TEAQLMA KATKGR V DDVRRKAIQAG XXXXXXXXXD GP GGG RW+ G+S E+KS LK SFR+T EK RSVSFA D +GG+R QHLADP +PSGSYRRQESD SS S ESLSPS SS TGG QASFDT ST+SA SV+S+AT T TST + G G + S S+SD DWP S QR G
Sbjct: 392 DEEGFRLGRRRRRRRLAEFEDVQFEVPTPTAGAVESEAAPLTGSKQAADLFNKAADQTSLTGVASALGIDVADLNFGDLAYFEGGEFTFSSDFD-----QAEDEG---ASTWATVLVAFILVTAMLLCSCCSCLVAKHATEKGMDGRXXXXXXXXXXXXXXRKSAVMQERLSTIEEEQG--LHVGKSEMTASHSMGPSPHHALVRSTSQE---------AAAVTRPSSSGK-PKSVHRTHSIGSETSSAVSEKFVYTNPMHK--HEKKLSPPNEYGDDLAKHY-EGEVGD-MSDISSELPH-KTDNPLFSSNSNRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGHLTESDATVEVDSYGASMSDAASTSLASSQSNTSESPLIDQAYSSSFDSDVDHHGGGEVAAEGSS-LVGGRNPRGSGGVLSVTSETSSRMPFGLSPVAERTDSRGESPGLTTNSSSTTGGASTVYLARAGADGPRGVPWSYSGPDGGGSY---SMASADAAGAAGAEDDDAESVFRPPSPGSVSRPLQPLLAQQSPMSCVSGFTSKSNSFAMSSRSSSMASSFASPKAGGGAAAASRLPPVGLRKGISNESLKAIKIASGGGDAEREAVXXXXXXXXXXVARSLSQEDRRTE---------ASSEGTAA-TGEDELGSLGMEKIPRSSVSSLSP--LARQHNEWRARYGSSQSELKFAEGXXXXXXXX------------------XXAASSRMASGTSDARLTSASTLSSFNGESIVSAMPSEDARARSSGATRASPD--PASAAGGGSVFGQSDNGSDASADAAAGHGDASISKGLASALDRRVKSAAVAPSPTHSRSGRAGTGATKSES------TVDEDGDEFYDATSTADGAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------XXXXXXXXXXXXXXXXXXXXXXXXGV------------------------------------------LDDTRG--------------------------LDQASIVAAEECRDRAIEAGTAAAGAAVASGEVTTEAQLMAAGAVAAAKATKGRAVPDDVRRKAIQAGAXXXXXXXXXDVGPPGGGGVSNRWSTGTSAVELKSALKKESSFRSTAEKPRSVSFAYDSXXXXXXXXXXXXXXSSRMGGLR----QHLADPSRPSGSYRRQESDSSS-LSGESLSPSYQGSSATGGGDSVSQASFDTDSTFSAVSVSSYATATTTSTAYGGGRAGGGRGGDDAYSQRSSSYSFRNDTSGSCSESDTDWPPSRQRGAG 1545
BLAST of mRNA_C-linearis_contig9.16712.1 vs. uniprot
Match: A0A6H5JJT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJT3_9PHAE) HSP 1 Score: 145 bits (367), Expect = 3.410e-34 Identity = 110/320 (34.38%), Postives = 137/320 (42.81%), Query Frame = 1
Query: 748 YTVSVRVLDTTAARTAEGSAAKVHPPEYATLRLEACGLSPRSVMGRGASVFVMEAASNGGGDAAE--------DIQHLFGVFPTFGTGQGGGSSDREHL------------PVPRRLRNTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAV------SAALERTGTIGHQGRRTSPLAGGGRTRSRRRLQEACSSSCLKSSVDPCVNDPECAGGGIGCNAQGDPLCRFCSQEGEEGSVYSACRDPDEPTPPXXXXXXXXADPERPECRGACRDNPDATFPCFDDPSCGGDSNLLGCNAEGNLYCRFCTIPGAVFDCP 1629
+TVS+R+ DT A S T RLEACG+ P SVMGRGASVFV+E G AA ++H+FGV PT+ G+ E L R LR+ A V +AA +G + A R R+ E CS+ CL S + C N+ C GGIGCNAQ DPLC+FC + G+ Y C D + PT DP+ EC C ++ D FPCFDDPSC D N +GCNA G+ YCRFC DCP
Sbjct: 9 HTVSIRIEDTEEAHRRRDSI---------TFRLEACGVGPSSVMGRGASVFVIEPGGVSSGAAAPAPAPGRGGTLRHMFGVLPTYLAGRRLSGRGPEQLWWQLQSLGAAAAATRRGLRSGAVGDQGVGSRRAEAAERALEPAASAALSYTDGGVDASATAAAAEANADELGDIASLAAVAASRAAARRRKLQLEDCSADCLTSETERCQNNEMCETGGIGCNAQDDPLCQFC----DLGAPYVEC-DEERPTEAPAPSPAPTLDPDYVECSSRCLESED--FPCFDDPSCPRDGNGIGCNATGDFYCRFCGFLEEFVDCP 312
BLAST of mRNA_C-linearis_contig9.16712.1 vs. uniprot
Match: R1D9K2_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D9K2_EMIHU) HSP 1 Score: 59.3 bits (142), Expect = 8.500e-5 Identity = 47/124 (37.90%), Postives = 55/124 (44.35%), Query Frame = 1
Query: 1291 CVNDPECAGGGIGCNAQGDPLCRFCSQEGEEGSVYSACRD--PDEPTPPXXXXXXXXADPER-PECR-GACRDNPDATFPCFDDPSCGGDSNLLGCNAEGNLYCRFCTIPG-AVFDCPFSTATP 1647
C+ DP CA GG+GCNA G L RFC +Y C P P PP PER +C+ G C N T C+ D SC L GCNA G CRFC + CP +P
Sbjct: 489 CIYDPTCAEGGLGCNAAGHFLWRFCGF-----GLYPPCPGGPPSAPAPPFR--------PERIDDCKAGTCTANFLET--CYFDRSCARGGGL-GCNAGGKTACRFCGFGAYSTVPCPMCDDSP 596 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16712.1 >prot_C-linearis_contig9.16712.1 ID=prot_C-linearis_contig9.16712.1|Name=mRNA_C-linearis_contig9.16712.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=2012bp MDALGTAVLPRLLAPLSSVFLFAAIFRPDITSAEALHHAVPVRTQAALVGback to top mRNA from alignment at C-linearis_contig9:3257369..3272016- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16712.1 ID=mRNA_C-linearis_contig9.16712.1|Name=mRNA_C-linearis_contig9.16712.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=14648bp|location=Sequence derived from alignment at C-linearis_contig9:3257369..3272016- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:3257369..3272016- >mRNA_C-linearis_contig9.16712.1 ID=mRNA_C-linearis_contig9.16712.1|Name=mRNA_C-linearis_contig9.16712.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=12072bp|location=Sequence derived from alignment at C-linearis_contig9:3257369..3272016- (Chordaria linearis ClinC8C monoicous)back to top |