mRNA_C-linearis_contig9.16705.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16705.1
Unique NamemRNA_C-linearis_contig9.16705.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3202606..3204679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue1.8e-08
Seed eggNOG ortholog2880.D7FMP0
Hectar predicted targeting categoryother localisation
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size953
Cds size951
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16705.1prot_C-linearis_contig9.16705.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 3202606..3204678 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930759.2614775-CDS-C-linearis_contig9:3202605..32026841622930759.2614775-CDS-C-linearis_contig9:3202605..3202684Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3202606..3202684 +
1690881234.771684-CDS-C-linearis_contig9:3202605..32026841690881234.771684-CDS-C-linearis_contig9:3202605..3202684Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3202606..3202684 +
1622930759.2824137-CDS-C-linearis_contig9:3203263..32040781622930759.2824137-CDS-C-linearis_contig9:3203263..3204078Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3203264..3204078 +
1690881234.7830243-CDS-C-linearis_contig9:3203263..32040781690881234.7830243-CDS-C-linearis_contig9:3203263..3204078Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3203264..3204078 +
1622930759.301561-CDS-C-linearis_contig9:3204621..32046781622930759.301561-CDS-C-linearis_contig9:3204621..3204678Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3204622..3204678 +
1690881234.794475-CDS-C-linearis_contig9:3204621..32046781690881234.794475-CDS-C-linearis_contig9:3204621..3204678Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3204622..3204678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16705.1

>prot_C-linearis_contig9.16705.1 ID=prot_C-linearis_contig9.16705.1|Name=mRNA_C-linearis_contig9.16705.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=317bp
GPQQQRGKGKRRFVDAGLALLPDEEEDDASPASSTGARVGGGAASNAVPA
GRRENPLDKSEIMTNLASFFDDNAYLFMGGVSRCWNKAWQWQRLPTKTCG
ISAMTTTGQLQHSFACGLERSSSVCVAAARLKKLNLLQVARDAGCPWDVD
VAVWLVRGGLTNELKKACSGEGACSLGEKVLDAAAEGSRWGLMRWLFGQG
CPCSPRTMAAIAANAGRKGNVGPDALLQLARNAGAPLDVATSVSLARRGL
KETLLWAVEEGCQINETTAAAAAEGGHLDVLVCLRSQNCPWDVETCKKAA
FGGHLDVLQYARKNGCP
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mRNA from alignment at C-linearis_contig9:3202606..3204679+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16705.1 ID=mRNA_C-linearis_contig9.16705.1|Name=mRNA_C-linearis_contig9.16705.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2074bp|location=Sequence derived from alignment at C-linearis_contig9:3202606..3204679+ (Chordaria linearis ClinC8C monoicous)
GGGCCACAACAGCAGCGCGGGAAGGGAAAGCGTCGTTTTGTCGATGCGGG
GCTAGCTCTCCTTCCCGATGAAGAAGAAGGTGAGGTACGGCGGTTAAAAA
TGAGTTTTATCTGTTGTAGCCATAAGGCTCAGTAGCTGAAGACGCCCGTT
TCGTGCGAAGAAGCTACGTAGGCTGCTCCGGGCAATTTAGGGCCACTTAT
CCGGCTCTCCGCGTGGAGATGCCTTGGCTCCACAGGCTATGGCGGACTGG
ACCATCAGGTTCTGCTGGCCGACGGCCTGAGCTGCTGGCAAGAAACCGCC
TGTGGGCTTGACGGCAGCCCCTATTTGCACAACGGTGGTGCAAATAACAC
CGTGCACAACCCCTGTCTGATTGGTCAAAGAAGACCCCCCGACACGGTCG
TTGTTGTTTTTTGCAAGAACGCCAACCGAAGCGCGGCGAAGTCGCGCAGA
GGCTTATTTCGCACCCGATCGCCCCAGAGGCTAGGCGTGTGGGTTAGGGT
TAGGGTTGGGTTGGGTTGGGTTGGGAGCAGCATAAATCATCGAGAGTGTG
GAAGCGTTGTGCACGGTGTTATTTCACAGCCGTTGTGCGAATAGGGGCTG
CCGTGCTTGACGCCCTCCACTCGCTCACTCCTCGCGCCGCGCCAACTGCA
ACAAACAGACGATGCTTCGCCCGCTAGTTCAACTGGTGCTCGTGTCGGCG
GCGGCGCTGCTTCCAACGCGGTGCCTGCCGGTCGCCGTGAAAACCCCCTA
GACAAATCAGAGATCATGACGAACCTGGCGTCTTTCTTTGACGACAACGC
ATACCTCTTCATGGGCGGCGTGTCCCGCTGCTGGAACAAGGCGTGGCAGT
GGCAGCGGCTTCCGACGAAGACCTGCGGGATATCGGCGATGACCACGACG
GGTCAGCTCCAGCACAGCTTCGCCTGCGGCCTCGAGCGGAGCTCGTCGGT
GTGCGTCGCGGCGGCCCGGCTCAAGAAGCTGAACCTCCTACAGGTCGCTC
GGGACGCGGGATGTCCCTGGGACGTCGACGTCGCGGTCTGGCTCGTGCGC
GGCGGCCTCACCAATGAGCTCAAGAAAGCCTGCTCTGGCGAAGGCGCTTG
CTCGTTGGGCGAGAAGGTTCTCGACGCCGCCGCCGAGGGTAGTAGGTGGG
GCCTGATGAGGTGGTTGTTTGGTCAGGGGTGCCCGTGCTCGCCCCGCACG
ATGGCAGCGATCGCTGCCAACGCTGGCCGGAAGGGGAACGTGGGGCCCGA
CGCTCTCCTGCAATTGGCGAGGAACGCGGGTGCCCCCTTGGATGTGGCCA
CTTCGGTGAGCCTCGCTCGCCGCGGGCTGAAGGAGACTCTGCTTTGGGCG
GTAGAGGAAGGGTGCCAGATCAACGAGACAACGGCCGCAGCGGCAGCAGA
GGGCGGACACCTGGATGTCTTGGTGTGCCTTAGGTCTCAGAACTGTCCCT
GGGACGTGGAGACGTGCAAGAAGGTGCGTGCGCACCCGCAGTATTGTTCC
AGATGCGCAATAGATGCGTGGTAGCAATCTTTGGTAAGCTGCTGGGGAAG
CGGTTGCCCCGAAACGACTTCCCGGTTTGGTCTTTCGCCAGCTTCAATCG
TCCACGGATACACGCGGTTTTTAACTTGACGGTGGTTGGTGTGGCTCAGG
CCTCAGCGTTGATACTCCGACCGGACCGCCTCCTCGCACGTACGTACATA
CGTACGTATGATACCCGTACATGTCCAGATGGATTTCAGATGCGTCGCAT
CAATCGTGGGCACACGGCCGAAAAGAATTGCCCCGGGAGCAACCCTCCCC
TTAGTTCGCTCAAGAATCACACGTTGATTCTGCGCGCAAGCATATCTCCA
TCATGGTGCCTCTACCGCGTGCTGATTCTCTCGGTTTTTGTTCACTGCTT
TTGCCCACAGCCAGTTTTTCAATGGCCGTTTTCGTGAAGATAGTGTCCAG
CCAGGCTACCCTGCTAGCCGCCACAGCCCGGTTTATCGCTGCAATGGCAC
CCACTTCTGCACGCAGGCGGCCTTCGGAGGGCACCTGGATGTTTTGCAGT
ACGCGAGGAAGAACGGTTGCCCGT
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Coding sequence (CDS) from alignment at C-linearis_contig9:3202606..3204679+

>mRNA_C-linearis_contig9.16705.1 ID=mRNA_C-linearis_contig9.16705.1|Name=mRNA_C-linearis_contig9.16705.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1902bp|location=Sequence derived from alignment at C-linearis_contig9:3202606..3204679+ (Chordaria linearis ClinC8C monoicous)
GGGCCACAACAGCAGCGCGGGAAGGGAAAGCGTCGTTTTGTCGATGCGGG
GCTAGCTCTCCTTCCCGATGAAGAAGAAGGGGCCACAACAGCAGCGCGGG
AAGGGAAAGCGTCGTTTTGTCGATGCGGGGCTAGCTCTCCTTCCCGATGA
AGAAGAAGACGATGCTTCGCCCGCTAGTTCAACTGGTGCTCGTGTCGGCG
GCGGCGCTGCTTCCAACGCGGTGCCTGCCGGTCGCCGTGAAAACCCCCTA
GACAAATCAGAGATCATGACGAACCTGGCGTCTTTCTTTGACGACAACGC
ATACCTCTTCATGGGCGGCGTGTCCCGCTGCTGGAACAAGGCGTGGCAGT
GGCAGCGGCTTCCGACGAAGACCTGCGGGATATCGGCGATGACCACGACG
GGTCAGCTCCAGCACAGCTTCGCCTGCGGCCTCGAGCGGAGCTCGTCGGT
GTGCGTCGCGGCGGCCCGGCTCAAGAAGCTGAACCTCCTACAGGTCGCTC
GGGACGCGGGATGTCCCTGGGACGTCGACGTCGCGGTCTGGCTCGTGCGC
GGCGGCCTCACCAATGAGCTCAAGAAAGCCTGCTCTGGCGAAGGCGCTTG
CTCGTTGGGCGAGAAGGTTCTCGACGCCGCCGCCGAGGGTAGTAGGTGGG
GCCTGATGAGGTGGTTGTTTGGTCAGGGGTGCCCGTGCTCGCCCCGCACG
ATGGCAGCGATCGCTGCCAACGCTGGCCGGAAGGGGAACGTGGGGCCCGA
CGCTCTCCTGCAATTGGCGAGGAACGCGGGTGCCCCCTTGGATGTGGCCA
CTTCGGTGAGCCTCGCTCGCCGCGGGCTGAAGGAGACTCTGCTTTGGGCG
GTAGAGGAAGGGTGCCAGATCAACGAGACAACGGCCGCAGCGGCAGCAGA
GGGCGGACACCTGGATGTCTTGGTGTGCCTTAGGTCTCAGAACTGTCCCT
GGGACGTGGAGACGTGCAAGAAGACGATGCTTCGCCCGCTAGTTCAACTG
GTGCTCGTGTCGGCGGCGGCGCTGCTTCCAACGCGGTGCCTGCCGGTCGC
CGTGAAAACCCCCTAGACAAATCAGAGATCATGACGAACCTGGCGTCTTT
CTTTGACGACAACGCATACCTCTTCATGGGCGGCGTGTCCCGCTGCTGGA
ACAAGGCGTGGCAGTGGCAGCGGCTTCCGACGAAGACCTGCGGGATATCG
GCGATGACCACGACGGGTCAGCTCCAGCACAGCTTCGCCTGCGGCCTCGA
GCGGAGCTCGTCGGTGTGCGTCGCGGCGGCCCGGCTCAAGAAGCTGAACC
TCCTACAGGTCGCTCGGGACGCGGGATGTCCCTGGGACGTCGACGTCGCG
GTCTGGCTCGTGCGCGGCGGCCTCACCAATGAGCTCAAGAAAGCCTGCTC
TGGCGAAGGCGCTTGCTCGTTGGGCGAGAAGGTTCTCGACGCCGCCGCCG
AGGGTAGTAGGTGGGGCCTGATGAGGTGGTTGTTTGGTCAGGGGTGCCCG
TGCTCGCCCCGCACGATGGCAGCGATCGCTGCCAACGCTGGCCGGAAGGG
GAACGTGGGGCCCGACGCTCTCCTGCAATTGGCGAGGAACGCGGGTGCCC
CCTTGGATGTGGCCACTTCGGTGAGCCTCGCTCGCCGCGGGCTGAAGGAG
ACTCTGCTTTGGGCGGTAGAGGAAGGGTGCCAGATCAACGAGACAACGGC
CGCAGCGGCAGCAGAGGGCGGACACCTGGATGTCTTGGTGTGCCTTAGGT
CTCAGAACTGTCCCTGGGACGTGGAGACGTGCAAGAAGGCGGCCTTCGGA
GGGCACCTGGATGTTTTGCAGTACGCGAGGAAGAACGGTTGCCCGGCGGC
CTTCGGAGGGCACCTGGATGTTTTGCAGTACGCGAGGAAGAACGGTTGCC
CG
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