mRNA_C-linearis_contig9.16701.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16701.1
Unique NamemRNA_C-linearis_contig9.16701.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig9.16701.1 vs. uniprot
Match: D8LSM6_ECTSI (GTPase Der n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSM6_ECTSI)

HSP 1 Score: 1071 bits (2769), Expect = 0.000e+0
Identity = 574/701 (81.88%), Postives = 616/701 (87.87%), Query Frame = 2 
Query:  134 VTPRARLQPPDRTQHHRTPGGDMTSNTPTACSPWQSRIRGSRATCCLLAAAAAA--TAPLTAEAWVAPRTHAAARSSQQAAASPSGRMSSTSTSRSRNEHNLCQVQKR--GGGDERSGSEGIRLSGERMGGSRKRRGALRSQAVDQTSASPTAEYEPMQEGDEVLIDFDENDFDESEDFFSVEGEEQDDDEADDEH--DIARSPVQVIGVEEAMERVLELKKLGPPVPVKGERARSKRRVPVVAVIGRPNVGKSTVVNRLAKRFKDGSIVFDESGVTRDRTYKRAWYCGKDFDVVDTGGLVFDDKGGDVFAKEIRQQALIALDEATAVLMVVDGKAGCNVLDQEIARFLRQQNVPVVLAVNKCESQRYGEVQTADFWCLGLGEPWPISGLHGDGIYDMMDNVKEHLYDVDETAEEEDNINVAIVGRPNVGKSSLLNRLFGETRSIVSDVPGTTRDSIDAMFERGGRTYRLVDTAGIRRKGKVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQDRVLADRVQSDGRACVVVCNKWDLVEDKNDASYNKAVDYARQMLSPVKWAEVCFTSAKTGQRCTKLFDLVDEVAVQHRRRVKTSVLNEVLRDAVLWQAPPSKKSSGASQGKIYYCNQIAARPPTVAIFCNNPKLFGDNYKRYLDRKFREQLGLKSTPIRFLWRGKKLRRMEQDNRRNPKPYSDK 2218
            +TPR +   P + Q   T  G  T+  P+A  P +SR++GSRA C LL AAA A  TAPLTAEAWV   +HAAARSS+QA        +   TSR  + H+ CQVQ++   GG  R  S+   LSG  + G R+R  + RSQAVD+ S++   E++PM+EGDEVLIDFDE++FDESEDFF+VEGEE+ D         D    PVQVIGVEEAM+RV ELKKLGPPVPVKGERARSKRR PVVAVIGRPNVGKSTVVNRLAKRFKDGSIVFDESGVTRDRTYKRAWYCGKDFDVVDTGGLVFDDKGGDVFAKEIRQQALIAL+EATAV+MVVDG  GCNVLDQEIARFLRQQ VPVVLAVNKCESQ+YGE+QTA+FWCLGLGEPWPISGLHGDGIYDMMDNV EHLY+VDE AEEEDNINVAIVGRPNVGKSSLLNRLFGETRSIVSDVPGTTRDSIDAMFERGGRTYRLVDTAGIRRKGKVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQDRVLADR+QSDGRACVVVCNKWDLVEDK+D+SYNKAV+YARQMLSPVKWAEVCFTSAKTGQRCTKLFDLVDEVAVQHRRRVKTSVLNEVLRDAVLWQAPPSKKSSGASQGKIYYCNQIA RPPTVA+FCNNPKLFGDNYKRYLDRKFREQLGLKSTPIRFLWRGK+LRRMEQDNRRNPKPYSDK
Sbjct:    1 MTPRRQ---PQQQQGQGTAEGSTTARNPSA--PSRSRLQGSRAACSLLTAAAVAAVTAPLTAEAWV---SHAAARSSRQA-------QTLGWTSRGSSGHHRCQVQRQRGSGGGSRESSQ---LSGRGVSGRRRRVVSCRSQAVDEASST---EHKPMEEGDEVLIDFDESEFDESEDFFAVEGEEEGDXXXXXXXXXDSTSGPVQVIGVEEAMDRVRELKKLGPPVPVKGERARSKRRFPVVAVIGRPNVGKSTVVNRLAKRFKDGSIVFDESGVTRDRTYKRAWYCGKDFDVVDTGGLVFDDKGGDVFAKEIRQQALIALEEATAVIMVVDGIVGCNVLDQEIARFLRQQKVPVVLAVNKCESQKYGEIQTAEFWCLGLGEPWPISGLHGDGIYDMMDNVAEHLYEVDENAEEEDNINVAIVGRPNVGKSSLLNRLFGETRSIVSDVPGTTRDSIDAMFERGGRTYRLVDTAGIRRKGKVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQDRVLADRIQSDGRACVVVCNKWDLVEDKDDSSYNKAVEYARQMLSPVKWAEVCFTSAKTGQRCTKLFDLVDEVAVQHRRRVKTSVLNEVLRDAVLWQAPPSKKSSGASQGKIYYCNQIATRPPTVAVFCNNPKLFGDNYKRYLDRKFREQLGLKSTPIRFLWRGKRLRRMEQDNRRNPKPYSDK 680
[Close]
BLAST of mRNA_C-linearis_contig9.16701.1 vs. uniprot
Match: W7TQC4_9STRA (GTPase Der n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQC4_9STRA)

HSP 1 Score: 570 bits (1468), Expect = 3.900e-191
Identity = 277/463 (59.83%), Postives = 367/463 (79.27%), Query Frame = 2 
Query:  830 RVPVVAVIGRPNVGKSTVVNRLAKRF--KDGSIVFDESGVTRDRTYKRAWYCGKDFDVVDTGGLVFDDKGGDVFAKEIRQQALIALDEATAVLMVVDGKAGCNVLDQEIARFLR-QQNVPVVLAVNKCESQRYGEVQTADFWCLGLGEPWPISGLHGDGIYDMMDNVKEHLYDVDETAEEEDNINVAIVGRPNVGKSSLLNRLFGETRSIVSDVPGTTRDSIDAMFERGGRTYRLVDTAGIRRKGKVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQDRVLADRVQSDGRACVVVCNKWDLVEDKNDASYNKAVDYARQMLSPVKWAEVCFTSAKTGQRCTKLFDLVDEVAVQHRRRVKTSVLNEVLRDAVLWQAPPSKKSSGASQGKIYYCNQIAARPPTVAIFCNNPKLFGDNYKRYLDRKFREQLGLKSTPIRFLWRGKKLRRMEQDNRRNPKPY 2209
            ++PV+AVIGRPNVGKST+VNRL +    +  +IV+D  GVTRDR Y++A + G+ F+VVDTGGL+FD+   ++FA +IR+QAL+AL+E+ A ++VVDG+ G   LD+E+A+FLR Q+N P+ +AVNKCE+   GE   + FW LGLGEP+P+SGLHG G+ +M++ +  H+Y+V+E AE E+ I VAIVGRPNVGKSSLLNRL+G+ R+IVSDV GTTRD++DA+ E  G++YR +DTAGIRR+ KV+YGNEF MVNRA KA+RRADVVLL+VDV  GI DQD++LA R+  DGRACV+V NKWD VE K+D ++N+AV Y ++ L  V WA+V FTSA TGQRC K+FD +D+ +  HR+RVKTS+LNEVL +A++WQ PP+ KSS   QG++YYCNQ+A  PP+V +FCNNPKLF D+YKRYLDRKFRE L L  TPIR+ +RGKKLR++ +    +P PY
Sbjct:  222 KLPVLAVIGRPNVGKSTIVNRLCRTMSTEPDAIVYDYEGVTRDRIYRKAEWNGRVFEVVDTGGLIFDEDQDNLFAPQIREQALLALEESVAAILVVDGQVGVTTLDEEVAKFLRLQKNKPIFVAVNKCETPNMGEAMASMFWKLGLGEPFPVSGLHGTGVAEMLERMLPHIYEVEE-AEREEAIKVAIVGRPNVGKSSLLNRLYGKERAIVSDVAGTTRDAVDALVEVNGKSYRFIDTAGIRRRKKVEYGNEFLMVNRALKAVRRADVVLLVVDVVEGINDQDKILAQRIAEDGRACVIVANKWDAVE-KDDRTFNEAVVYVKEELFAVSWADVLFTSALTGQRCHKIFDAIDKASAAHRQRVKTSILNEVLGEALVWQRPPTVKSS--QQGRVYYCNQVATEPPSVVVFCNNPKLFPDSYKRYLDRKFRESLDLTGTPIRWYFRGKKLRQLAKQG--SPVPY 678
[Close]
BLAST of mRNA_C-linearis_contig9.16701.1 vs. uniprot
Match: B7FRD0_PHATC (GTPase Der n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FRD0_PHATC)

HSP 1 Score: 542 bits (1396), Expect = 3.220e-182
Identity = 272/510 (53.33%), Postives = 373/510 (73.14%), Query Frame = 2 
Query:  734 VIGVEEAMERVLELKKLGP----PVPVKGERARSKRRVPVVAVIGRPNVGKSTVVNRLAKRFKDGSIVFDESGVTRDRTYKRAWYCGKDFDVVDTGGLVFDDKGGDVFAKEIRQQALIALDEATAVLMVVDGKAGCNVLDQEIARFLRQQ-NVPVVLAVNKCESQRYGEVQTADFWCLGLGEPWPISGLHGDGIYDMMDNVKEHL-----YDVDETAEEEDNINVAIVGRPNVGKSSLLNRLFGETRSIVSDVPGTTRDSIDAMFERG--------GRTYRLVDTAGIRRKGKVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQDRVLADRVQSDGRACVVVCNKWDLVEDKNDASYNKAVDYARQMLSPVKWAEVCFTSAKTGQRCTKLFDLVDEVAVQHRRRVKTSVLNEVLRDAVLWQAPPSKKSSGASQGKIYYCNQIAARPPTVAIFCNNPKLFGDNYKRYLDRKFREQL-GLKSTPIRFLWRGKKLRRMEQDNRRNPKP 2206
            VIG+   ++RV E   + P    P      R R  ++ P++A++GRPNVGKS +VNR+A     G+IV DESG+TRDRTY+ A + G+ F +VDTGGLVFDD    +FAKEIR+QA++A++E+ AV+MVVDG+ G   +D  IA FLR++ ++PV +AVNKCES++ G +  ADFW LGLGEP+P+S LHG G  ++M+ + + +     +D ++  EE   IN+AI+GRPNVGKSSLLN +FG+TR+IVS++ GTTRDSIDA+ ER            YR VDTAGIRRKGKVD+G EFFMVNRA +AIRRADVVLL++D  +G+ +QDRVLA ++  DGRACV+VCNKWD V DK+  +Y+K+V Y R+ L  ++WA + F SA TGQR  K++  +D     HR+R+ T++LNEVLRDA+LWQ PP++++   SQ KIYYCNQ++ RPPTV +FCN+PKL  DNY+RYLDRKFRE L G ++TPIR+++RG+++R + ++   N  P
Sbjct:   32 VIGLLATLDRVNEKSTVEPSSGDPQLQPIRRLRQNKKEPLIAIVGRPNVGKSALVNRIAGSQSGGAIVADESGITRDRTYRPAEFLGERFMIVDTGGLVFDDDESTLFAKEIREQAMVAIEESAAVIMVVDGQTGLTGMDLMIAEFLRKEVDIPVHVAVNKCESEKTGAMSAADFWGLGLGEPFPVSALHGVGTAEIMETIFDSIAEKKTFDAEDRPEE---INIAIIGRPNVGKSSLLNSIFGDTRAIVSEMAGTTRDSIDAVMERPPPPGSDDLSTIYRFVDTAGIRRKGKVDFGPEFFMVNRALRAIRRADVVLLILDATSGVAEQDRVLAQKIADDGRACVIVCNKWDAVVDKDSTTYDKSVQYFREELPMIRWAPILFISAATGQRVGKIYSAIDGAIEAHRKRISTAILNEVLRDAILWQPPPTRRNG--SQAKIYYCNQVSTRPPTVVVFCNDPKLVNDNYRRYLDRKFRESLDGFEATPIRWIFRGRRVRDVMRNRSMNGDP 536
[Close]
BLAST of mRNA_C-linearis_contig9.16701.1 vs. uniprot
Match: A0A1Z5K803_FISSO (GTPase Der n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K803_FISSO)

HSP 1 Score: 533 bits (1373), Expect = 5.350e-178
Identity = 268/536 (50.00%), Postives = 368/536 (68.66%), Query Frame = 2 
Query:  812 RARSKRRVPVVAVIGRPNVGKSTVVNRLAKRFKDGSIVFDESGVTRDRTYKRAWYCGKDFDVVDTGGLVFDDKGGDVFAKEIRQQALIALDEATAVLMVVDGKAGCNVLDQEIARFLRQQ---NVPVVLAVNKCESQRYGEVQTADFWCLGLGEPWPISGLHGDGIYDMMDNVKEHL------------------------------------------YDVDETA-----------------EEEDNINVAIVGRPNVGKSSLLNRLFGETRSIVSDVPGTTRDSIDAMFERGG--------RTYRLVDTAGIRRKGKVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQDRVLADRVQSDGRACVVVCNKWDLVEDKNDASYNKAVDYARQMLSPVKWAEVCFTSAKTGQRCTKLFDLVDEVAVQHRRRVKTSVLNEVLRDAVLWQAPPSKKSSGASQGKIYYCNQIAARPPTVAIFCNNPKLFGDNYKRYLDRKFREQL-GLKSTPIRFLWRGKKLRRMEQDNRRNPKP 2206
            RAR  ++VP++A++GRPNVGKS +VNR+A     G+IV DESG+TRDRTY+ A + G+ F VVDTGGLVFDD    +FAKEIR+QA+IA++E+ AV++V DG+AG + +D  IA FLR++   ++PV++AVNKCES++ G +  ++FW LGLGEP+P+S LHG G  D+++++ E +                                          Y + + A                 E+++ INVAI+GRPNVGKSSLLN +FG TR+IVSD+ GTTRDSIDA+ ER            YR VDTAGIRRKGKVD+G EFFMVNRA +AIRRADVVLL++D  AG+T+QDR+LA ++  DGRAC ++CNKWD V DK+  +Y+KAV Y R+ L  ++WA + F SA TGQR  K++ ++DE    HR+R+ TS+LNEVLRDA+LWQ PP++++   SQ +IYYCNQ++ RPPT+ +FCN+PKL  DNY+RYLDRKFRE L G ++TPIR+++RG++ R + +    N +P
Sbjct:   55 RARKNKKVPLIAIVGRPNVGKSALVNRIAGSQSGGAIVADESGITRDRTYRPAEFLGEHFSVVDTGGLVFDDDENTLFAKEIREQAMIAIEESAAVILVADGQAGLSPMDVAIAEFLRKEVVKDIPVLMAVNKCESEKTGAMAASEFWQLGLGEPFPVSALHGVGTADLLESMFEQIAQKKTAIDGFGTKVKKLQEAKAIMKHKGPLPGEDETSYKMRKYGIGDAAQNALDAYEDALAAFDELEQQEEINVAIIGRPNVGKSSLLNAIFGGTRAIVSDLAGTTRDSIDAVMERPAPPGSDEQPTLYRFVDTAGIRRKGKVDFGPEFFMVNRALRAIRRADVVLLILDATAGVTEQDRILAQKISDDGRACAIICNKWDAVVDKDSLTYDKAVKYVREELPQIRWAPILFISAATGQRVGKIYGVIDEAIAAHRKRISTSILNEVLRDAILWQPPPARRNG--SQARIYYCNQVSTRPPTIVVFCNDPKLVNDNYRRYLDRKFRESLDGFEATPIRWIFRGRRERDIMRMRTMNGEP 588
[Close]
BLAST of mRNA_C-linearis_contig9.16701.1 vs. uniprot
Match: A0A7S1FMA9_9STRA (GTPase Der n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMA9_9STRA)

HSP 1 Score: 533 bits (1372), Expect = 1.160e-177
Identity = 280/532 (52.63%), Postives = 370/532 (69.55%), Query Frame = 2 
Query:  737 IGVEEAMERVLELKKLGPPVPVKGERARSKRRVPVVAVIGRPNVGKSTVVNRLAKRFKDGSIVFDESGVTRDRTYKRAWYCGKDFDVVDTGGLVFDDKGGDVFAKEIRQQALIALDEATAVLMVVDGKAGCNVLDQEIARFLRQQ-NVPVVLAVNKCESQRYGEVQTADFWCLGLGEPWPISGLHGDGIYDMMDNVKEHLYDV----DETAEEE------------------------------------DNINVAIVGRPNVGKSSLLNRLFGETRSIVSDVPGTTRDSIDAMFER---GGRT----YRLVDTAGIRRKGKVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQDRVLADRVQSDGRACVVVCNKWDLVEDKNDASYNKAVDYARQMLSPVKWAEVCFTSAKTGQRCTKLFDLVDEVAVQHRRRVKTSVLNEVLRDAVLWQAPPSKKSSGASQGKIYYCNQIAARPPTVAIFCNNPKLFGDNYKRYLDRKFREQL-GLKSTPIRFLWRGKKLRRMEQD 2185
            +  EE    +LE +   P +     RAR K ++P++AVIGRPNVGKS +VNR+A     GSIV DESG+TRDRTY+   + G+DF +VDTGGLVFDD    +FA EIRQQA++A+ E+ A ++VVDG  GC  +D  +A FLR++ N+PV +AVNKCES++ G +  ADFW LGLGEP+P+S +HG G  ++++ + E +  +    DE  +EE                                    + IN+AIVGRPNVGKSSLLN+LFG+ R+IVS++ GTTRDSIDA+ ER    G T    YR VDTAGIRRK KVD+G EFFMVNRA +AIRR+DVVLL++D  AGI +QDRVLA ++  DGRAC++VCNKWD V +K++++Y K+V Y R  L  V+W+ + F SA TGQRC K++DLVD     HR+RV TSVLNE+LRDA+ WQ PPS++S   +Q KIYYCNQ++ RPPT+ +F N+PKL  DNYKRYLDRKFRE L G +STPIR+L+RG+++R + +D
Sbjct:   65 LNTEEVRMPILEGEDSSPDLYGAIRRAR-KSKMPILAVIGRPNVGKSALVNRIAGTQSGGSIVADESGITRDRTYRSGNFLGRDFQLVDTGGLVFDDDEDTLFASEIRQQAMVAIGESVAAVLVVDGLVGCTSMDLALAEFLRKEVNIPVHVAVNKCESEKSGGLNAADFWQLGLGEPFPVSAIHGVGTAELLERLFESVPQLAASEDEVEDEELLAQFSYLGDVMKKNRREIQKEKDALRNRDDDDLTQEEINIAIVGRPNVGKSSLLNKLFGDQRAIVSEMAGTTRDSIDALMERPSPDGITPAVQYRFVDTAGIRRKNKVDFGPEFFMVNRALRAIRRSDVVLLILDATAGIAEQDRVLAQKIADDGRACIIVCNKWDAVVNKDNSTYEKSVKYFRMELPMVRWSPILFISAVTGQRCKKIYDLVDAAVSAHRKRVPTSVLNEILRDAIAWQPPPSRRSG--AQAKIYYCNQVSVRPPTIVVFVNDPKLVSDNYKRYLDRKFRESLDGFESTPIRWLFRGRRVRDVLRD 593
[Close]
BLAST of mRNA_C-linearis_contig9.16701.1 vs. uniprot
Match: A0A6U3PFH2_9STRA (GTPase Der n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3PFH2_9STRA)

HSP 1 Score: 527 bits (1357), Expect = 4.720e-175
Identity = 271/540 (50.19%), Postives = 367/540 (67.96%), Query Frame = 2 
Query:  812 RARSKRRVPVVAVIGRPNVGKSTVVNRLAKRFKDGSIVFDESGVTRDRTYKRAWYCGKDFDVVDTGGLVFDDKGGDVFAKEIRQQALIALDEATAVLMVVDGKAGCNVLDQEIARFLRQQ---NVPVVLAVNKCESQRYGEVQTADFWCLGLGEPWPISGLHGDGIYDMM-----------------------------------------DNVKEHL----------------------YDVDETAEEEDNINVAIVGRPNVGKSSLLNRLFGETRSIVSDVPGTTRDSIDAMFERGGRT--------YRLVDTAGIRRKGKVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQDRVLADRVQSDGRACVVVCNKWDLVEDKNDASYNKAVDYARQMLSPVKWAEVCFTSAKTGQRCTKLFDLVDEVAVQHRRRVKTSVLNEVLRDAVLWQAPPSKKSSGASQGKIYYCNQIAARPPTVAIFCNNPKLFGDNYKRYLDRKFREQL-GLKSTPIRFLWRGKKLRRMEQDNRRNPKP 2206
            R R  ++ P++A++GRPNVGKS +VNR+A     G+IV DE G+TRDRTY+ A + G+ F +VDTGGLVFDD    +FA+EIR+QA++A++E+ AV++VVDGK G   +DQ++A FLR++   +VPV +AVNKCES++ G V  ADFW LGLGEP+P+S LHG+G+ +++                                         D  ++ L                      +D +E  EE   +N+AIVGRPNVGKSSLLN LFG  RSIVSD+ GTTRDSIDA+ ER            YR VDTAGIRRKGKV++G EFFMVNRA +AIRR+DV LL++D  AG+T+QDR+LA ++  DGRACV+VCNKWD V DK+ ++Y+K+V Y R+ L  V+WA + F SA TGQRC K++  VDE  V HRRR+ T++LNEVLRDA+LWQ PP++++   +Q KIYYCNQ++ RPPT+ +FCN+PKL  DNYKRYLDRKFRE L G ++TPIR+++RG+++R + +  + N +P
Sbjct:   93 RHRRTKKEPLIAIVGRPNVGKSALVNRIAGTQSGGAIVADEPGITRDRTYRSAEFLGERFQLVDTGGLVFDDTDA-LFAREIREQAMVAIEESAAVILVVDGKIGLTNMDQQLADFLRKEVTKDVPVHVAVNKCESEKTGAVAAADFWSLGLGEPFPVSALHGNGVAEVLEAMFDSVVKKGTAIQGFGTKVVEMKKAQQAIIDYTKEVDGEDETEQFLRKYGVGDDASKVIEKYEKAMAAFDEEEAMEE---LNIAIVGRPNVGKSSLLNTLFGGARSIVSDMAGTTRDSIDAVMERPPAPGSDAPPTLYRFVDTAGIRRKGKVEFGPEFFMVNRALRAIRRSDVALLVLDATAGVTEQDRILAQKIADDGRACVIVCNKWDAVVDKDSSTYDKSVKYFREELPQVRWAPILFISAATGQRCGKIYATVDEAIVAHRRRISTAILNEVLRDAILWQPPPARRNG--AQAKIYYCNQVSTRPPTIVVFCNDPKLINDNYKRYLDRKFRESLDGFEATPIRWIFRGRRVRDIARSRKMNGEP 626
[Close]
BLAST of mRNA_C-linearis_contig9.16701.1 vs. uniprot
Match: A0A7S2WMX9_9STRA (GTPase Der n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WMX9_9STRA)

HSP 1 Score: 526 bits (1356), Expect = 6.250e-175
Identity = 275/537 (51.21%), Postives = 363/537 (67.60%), Query Frame = 2 
Query:  812 RARSKRRVPVVAVIGRPNVGKSTVVNRLAKRFKDGSIVFDESGVTRDRTYKRAWYCGKDFDVVDTGGLVFDDKGGDVFAKEIRQQALIALDEATAVLMVVDGKAGCNVLDQEIARFLRQQ---NVPVVLAVNKCESQRYGEVQTADFWCLGLGEPWPISGLHGDGIYDMMDNV------------------------KEHLYDV---------------------DETA---------------EEEDNINVAIVGRPNVGKSSLLNRLFGETRSIVSDVPGTTRDSIDAMFERGG--------RTYRLVDTAGIRRKGKVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQDRVLADRVQSDGRACVVVCNKWDLVEDKNDASYNKAVDYARQMLSPVKWAEVCFTSAKTGQRCTKLFDLVDEVAVQHRRRVKTSVLNEVLRDAVLWQAPPSKKSSGASQGKIYYCNQIAARPPTVAIFCNNPKLFGDNYKRYLDRKFREQL-GLKSTPIRFLWRGKKLRRMEQDNRRNPKP 2206
            RAR  ++VP++A++GRPNVGKS  VNR+A     G+IV DE+G+TRDRTY+ A + G+ F +VDTGGLVFDD+ G +FAKEIR+QA+IA++E+ AV++VVDG+ G   +D E+  FLR++   ++PV +AVNKCES++ G V  A+FW LGLGEP+ +S LHG G  ++M+ V                        K  L D+                     DE A               +E + INVAIVGRPNVGKSSLLN +FG  R+IVSDV GTTRDSIDA+ ER            YR VDTAGIRRKGK+++G EFFMVNRA +AIRRADVVLL++DV AG+T+QDR+LA +V  DGRACV+VCNKWD V DK+  SY K+V Y R+ L  V+WA + FTSA TGQR  K++  VDE    HR+R+ T++LNEVLRDA+LWQ PP+K++   +Q KIYYCNQ++ RPPT+ +FCN P L  DNYKRYLDRK RE L G ++TP+R+++RG+++R + +  + N  P
Sbjct:   91 RARRNKKVPLIAIVGRPNVGKSAFVNRIAGTQSGGAIVADEAGITRDRTYRNAEFLGEQFQLVDTGGLVFDDRDG-MFAKEIREQAMIAIEESVAVILVVDGQVGMTTMDDELGTFLRKEITRDLPVHVAVNKCESEKTGGVAAAEFWNLGLGEPFAVSALHGVGTAELMETVFASIVRKKSAIQGFGTKAINLKEAKRALKDIKLDIDGEDDTDKFLRKYNLGRDEEAVIERYEEALASLDYDDEPEEINVAIVGRPNVGKSSLLNAIFGTNRAIVSDVAGTTRDSIDAVMERPAPENSDENPTLYRFVDTAGIRRKGKIEFGPEFFMVNRALRAIRRADVVLLILDVLAGVTEQDRILAQKVADDGRACVIVCNKWDAVVDKDSDSYVKSVKYIREELPQVRWAPILFTSAATGQRVNKIYGAVDEAVKAHRKRISTAILNEVLRDAILWQRPPAKRNG--AQAKIYYCNQVSTRPPTIVVFCNEPSLINDNYKRYLDRKMRESLSGFEATPVRWIFRGRRVRDVMRARKMNGNP 624
[Close]
BLAST of mRNA_C-linearis_contig9.16701.1 vs. uniprot
Match: A0A251WGG9_9CYAN (GTPase Der n=2 Tax=unclassified Alkalinema TaxID=2635015 RepID=A0A251WGG9_9CYAN)

HSP 1 Score: 518 bits (1333), Expect = 3.450e-174
Identity = 265/451 (58.76%), Postives = 335/451 (74.28%), Query Frame = 2 
Query:  833 VPVVAVIGRPNVGKSTVVNRLAKRFKDGSIVFDESGVTRDRTYKRAWYCGKDFDVVDTGGLVFDDKGGDVFAKEIRQQALIALDEATAVLMVVDGKAGCNVLDQEIARFLRQQNVPVVLAVNKCESQRYGEVQTADFWCLGLGEPWPISGLHGDGIYDMMDNVKEHLYDVDETAEEEDNINVAIVGRPNVGKSSLLNRLFGETRSIVSDVPGTTRDSIDAMFERGGRTYRLVDTAGIRRKGKVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQDRVLADRVQSDGRACVVVCNKWDLVEDKNDASYNKAVDYARQMLSPVKWAEVCFTSAKTGQRCTKLFDLVDEVAVQHRRRVKTSVLNEVLRDAVLWQAPPSKKSSGASQGKIYYCNQIAARPPTVAIFCNNPKLFGDNYKRYLDRKFREQLGLKSTPIRFLWRGKKLRRMEQD 2185
            +PVVA+IGRPNVGKST+VNRLA+  +  +IVFDE GVTRDRTYKRA++  ++F VVDTGGLVFDD     F   IR+QA  AL EA A + VVDG+ G  V D+EIA +LR Q+VPVV+AVNKCES   GE+Q A+FW LGLG+P+  SG+HG+G  D++D V +H   + E  EE + I VAIVGRPNVGKSSLLN   G+ RSIVS + GTTRD+ID + ER G  YRL+DTAGIR+K  V+YG EFF +NRAFKAI RADVVL+++D   G+T+QD+ LA R+  +GRACVVV NKWD +E  +   Y    D  R  L   +WA++ FTSA TGQR  K+FDL+   A QHRRR+ TSV+NE+L DAV+W  PP+ +     QGKIYY  Q++A+PPT+A+F NNP+LFGD Y+RY++RKFRE LG K TPIR LWRGKK+R +E++
Sbjct:    3 LPVVAIIGRPNVGKSTIVNRLAQVQE--AIVFDEPGVTRDRTYKRAFWRDREFMVVDTGGLVFDDDTE--FLPFIREQAEAALLEACAAIFVVDGQEGLTVADEEIASWLRLQDVPVVVAVNKCESVTQGELQAAEFWSLGLGQPYASSGIHGNGTGDVLDEVLKHFPPI-EDVEEAEEIRVAIVGRPNVGKSSLLNAFTGQNRSIVSPISGTTRDTIDMLVERKGVNYRLIDTAGIRKKKHVEYGPEFFSINRAFKAINRADVVLMVIDAVDGVTEQDQKLAGRILDEGRACVVVVNKWDAIEKDSTTIYEYERD-VRSRLHFTEWADMIFTSAMTGQRVEKIFDLIAPAAEQHRRRIGTSVINEILEDAVMWHTPPTTRQG--KQGKIYYGTQVSAQPPTIALFVNNPELFGDGYRRYIERKFRESLGFKGTPIRLLWRGKKVRDVERN 445
[Close]
BLAST of mRNA_C-linearis_contig9.16701.1 vs. uniprot
Match: UPI0019A4D92C (Ribosome biogenesis GTPase Der n=1 Tax=Leptolyngbyaceae cyanobacterium LF-bin-369 TaxID=2804781 RepID=UPI0019A4D92C)

HSP 1 Score: 516 bits (1330), Expect = 1.340e-173
Identity = 259/453 (57.17%), Postives = 336/453 (74.17%), Query Frame = 2 
Query:  833 VPVVAVIGRPNVGKSTVVNRLAKRFKDGSIVFDESGVTRDRTYKRAWYCGKDFDVVDTGGLVFDDKGGDVFAKEIRQQALIALDEATAVLMVVDGKAGCNVLDQEIARFLRQQNVPVVLAVNKCESQRYGEVQTADFWCLGLGEPWPISGLHGDGIYDMMDNVKEHLYDVDETAEEEDNINVAIVGRPNVGKSSLLNRLFGETRSIVSDVPGTTRDSIDAMFERGGRTYRLVDTAGIRRKGKVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQDRVLADRVQSDGRACVVVCNKWDLVEDKNDASYNKAVDYARQMLSP---VKWAEVCFTSAKTGQRCTKLFDLVDEVAVQHRRRVKTSVLNEVLRDAVLWQAPPSKKSSGASQGKIYYCNQIAARPPTVAIFCNNPKLFGDNYKRYLDRKFREQLGLKSTPIRFLWRGKKLRRMEQ 2182
            +PVVA+IGRPNVGKST+VNRLA+     +IVFDE G+TRDR+YKRA++  ++F VVDTGGLVFDD+    F   IR+QA  AL EA   + VVDG+ G  + D+EIA +LR Q VPVVLAVNKCES   G++Q ++FW LGLG P+P+SG+HG+G  +++D+V ++L   +E  +E+D I VAI+GRPNVGKSSLLN   GE RSIVSD+ GTTRD+ID   ERGG  YRL+DTAGIRRK  VDYG EFF +NR FKAI R+DVVL+++D E G+TDQD+ LA R+  +GRACVVV NKWD++E  ++  Y    ++ R++ S     +WA++ FTSA  GQR  K+FDL+   A QHRRR+ TS +NEV+ DAV+W  PPS +     QGKIYY  Q++A+PP +A+F NNP LFGD Y+RY++RKFRE LG + TPIR  WRGKK+R  E+
Sbjct:    3 LPVVAIIGRPNVGKSTIVNRLAQ--VQDAIVFDEPGITRDRSYKRAFWLDREFMVVDTGGLVFDDETE--FLPLIREQAEAALAEACVAIFVVDGRQGLTIADEEIAGWLRLQTVPVVLAVNKCESVMQGDLQASEFWTLGLGTPYPMSGIHGNGTGELLDDVMQYLPPSEEV-QEDDEIRVAIIGRPNVGKSSLLNAFTGENRSIVSDISGTTRDTIDMKVERGGIHYRLIDTAGIRRKKNVDYGAEFFSINRTFKAISRSDVVLMVLDAEDGVTDQDQKLAGRILDEGRACVVVVNKWDMIEKDSNTIY----EFEREIRSRFHFTEWADIIFTSALNGQRVEKIFDLIAPAAEQHRRRISTSTINEVIEDAVMWHTPPSTRQG--KQGKIYYGTQVSAQPPAIALFVNNPDLFGDGYRRYIERKFRESLGFRGTPIRLFWRGKKVRDAER 444
[Close]
BLAST of mRNA_C-linearis_contig9.16701.1 vs. uniprot
Match: A0A0S3TZP2_9CYAN (GTPase Der n=6 Tax=Cyanobacteria TaxID=1117 RepID=A0A0S3TZP2_9CYAN)

HSP 1 Score: 516 bits (1329), Expect = 1.380e-173
Identity = 264/455 (58.02%), Postives = 331/455 (72.75%), Query Frame = 2 
Query:  833 VPVVAVIGRPNVGKSTVVNRLAKRFKDGSIVFDESGVTRDRTYKRAWYCGKDFDVVDTGGLVFDDKGGDVFAKEIRQQALIALDEATAVLMVVDGKAGCNVLDQEIARFLRQQNVPVVLAVNKCESQRYGEVQTADFWCLGLGEPWPISGLHGDGIYDMMDNVKEHLYDVDETAEEEDNINVAIVGRPNVGKSSLLNRLFGETRSIVSDVPGTTRDSIDAMFERGGRTYRLVDTAGIRRKGKVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQDRVLADRVQSDGRACVVVCNKWDLVEDKNDASYNKAVDYARQMLSPVKWAEVCFTSAKTGQRCTKLFDLVDEVAVQHRRRVKTSVLNEVLRDAVLWQAPPSKKSSGASQGKIYYCNQIAARPPTVAIFCNNPKLFGDNYKRYLDRKFREQLGLKSTPIRFLWRGKKLRRMEQDNRRN 2197
            +P+VA+IGRPNVGKST+VNRLA+     +IVFDE GVTRDRTYKRA++  ++F VVDTGGLVFDD     F   IR+QA+ AL E+ A + VVDG+AG    DQEIA++LRQQ VPVVLAVNKCES   G +Q A+FW LGLGEP+P+S +HG G  D++D V EHL   DE  EE     VAI GRPNVGKSSLLN   GE RSIVS + GTTRD+ID + ER G+ YRL+DTAGIR+K  V+YG EFF +NRAFKAI R+DVVLL++D   G+T+QD+ LA R+  +GR CVV+ NKWD VE  +   Y       R  L  V+WAE  F SAKTGQR  K+F+L+D  A QH+RRV T+V+NEVL DA+ W  PP+ +     QGKIYY  Q++  PPT+A+F N+P LF +NY+RY+DRKFRE LG + TP+R LWRGKK+R +E+ ++ N
Sbjct:    3 LPIVAIIGRPNVGKSTLVNRLAQ--VQDAIVFDEPGVTRDRTYKRAFWRDREFQVVDTGGLVFDDDTE--FLPLIREQAMAALSESKAAIFVVDGQAGLTQADQEIAQWLRQQPVPVVLAVNKCESLDQGLIQAAEFWELGLGEPYPVSSIHGSGTGDLLDQVVEHLPPTDEI-EETLETKVAIAGRPNVGKSSLLNAFVGENRSIVSPISGTTRDAIDMLVERDGKQYRLIDTAGIRKKKNVEYGPEFFGINRAFKAIDRSDVVLLVIDALDGVTEQDQKLAGRIDDEGRGCVVIVNKWDAVEKDSHTIYEYD-QQIRDRLHFVEWAESIFISAKTGQRVEKIFELIDRAAEQHKRRVSTAVINEVLEDALSWHTPPTTRQG--RQGKIYYGTQVSTAPPTIALFVNDPNLFNENYRRYIDRKFRESLGFQGTPVRLLWRGKKVREVERGHQAN 449
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSM6_ECTSI0.000e+081.88GTPase Der n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
W7TQC4_9STRA3.900e-19159.83GTPase Der n=2 Tax=Monodopsidaceae TaxID=425072 Re... [more]
B7FRD0_PHATC3.220e-18253.33GTPase Der n=2 Tax=Phaeodactylum tricornutum TaxID... [more]
A0A1Z5K803_FISSO5.350e-17850.00GTPase Der n=1 Tax=Fistulifera solaris TaxID=15195... [more]
A0A7S1FMA9_9STRA1.160e-17752.63GTPase Der n=1 Tax=Corethron hystrix TaxID=216773 ... [more]
A0A6U3PFH2_9STRA4.720e-17550.19GTPase Der n=1 Tax=Ditylum brightwellii TaxID=4924... [more]
A0A7S2WMX9_9STRA6.250e-17551.21GTPase Der n=1 Tax=Eucampia antarctica TaxID=49252... [more]
A0A251WGG9_9CYAN3.450e-17458.76GTPase Der n=2 Tax=unclassified Alkalinema TaxID=2... [more]
UPI0019A4D92C1.340e-17357.17Ribosome biogenesis GTPase Der n=1 Tax=Leptolyngby... [more]
A0A0S3TZP2_9CYAN1.380e-17358.02GTPase Der n=6 Tax=Cyanobacteria TaxID=1117 RepID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3107816..3124089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score1072.4
Seed ortholog evalue8.4e-311
Seed eggNOG ortholog2880.D8LSM6
KEGG rclassRC00053,RC00209,RC00870
KEGG koko:K03650,ko:K03977
KEGG ReactionR08701
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.GTP binding
EggNOG OGsCOG0486@1,KOG1191@2759
Ec32 ortholog descriptionPEngA, plastid EngA GTPase
Ec32 orthologEc-09_002220.1
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03016
Exons15
Model size2393
Cds size2022
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930758.5644495-UTR-C-linearis_contig9:3107815..31080141622930758.5644495-UTR-C-linearis_contig9:3107815..3108014Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3107816..3108014 +
1690881234.414637-UTR-C-linearis_contig9:3107815..31080141690881234.414637-UTR-C-linearis_contig9:3107815..3108014Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3107816..3108014 +
1622930758.8959339-UTR-C-linearis_contig9:3123917..31240891622930758.8959339-UTR-C-linearis_contig9:3123917..3124089Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3123918..3124089 +
1690881234.6054916-UTR-C-linearis_contig9:3123917..31240891690881234.6054916-UTR-C-linearis_contig9:3123917..3124089Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3123918..3124089 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930758.5802395-CDS-C-linearis_contig9:3108014..31083931622930758.5802395-CDS-C-linearis_contig9:3108014..3108393Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3108015..3108393 +
1690881234.430425-CDS-C-linearis_contig9:3108014..31083931690881234.430425-CDS-C-linearis_contig9:3108014..3108393Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3108015..3108393 +
1622930758.5932326-CDS-C-linearis_contig9:3109250..31093961622930758.5932326-CDS-C-linearis_contig9:3109250..3109396Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3109251..3109396 +
1690881234.4391322-CDS-C-linearis_contig9:3109250..31093961690881234.4391322-CDS-C-linearis_contig9:3109250..3109396Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3109251..3109396 +
1622930758.6182156-CDS-C-linearis_contig9:3109765..31098951622930758.6182156-CDS-C-linearis_contig9:3109765..3109895Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3109766..3109895 +
1690881234.4474716-CDS-C-linearis_contig9:3109765..31098951690881234.4474716-CDS-C-linearis_contig9:3109765..3109895Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3109766..3109895 +
1622930758.6381834-CDS-C-linearis_contig9:3110420..31106201622930758.6381834-CDS-C-linearis_contig9:3110420..3110620Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3110421..3110620 +
1690881234.4557667-CDS-C-linearis_contig9:3110420..31106201690881234.4557667-CDS-C-linearis_contig9:3110420..3110620Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3110421..3110620 +
1622930758.6538715-CDS-C-linearis_contig9:3111004..31111631622930758.6538715-CDS-C-linearis_contig9:3111004..3111163Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3111005..3111163 +
1690881234.4645562-CDS-C-linearis_contig9:3111004..31111631690881234.4645562-CDS-C-linearis_contig9:3111004..3111163Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3111005..3111163 +
1622930758.6797585-CDS-C-linearis_contig9:3111421..31115051622930758.6797585-CDS-C-linearis_contig9:3111421..3111505Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3111422..3111505 +
1690881234.4740872-CDS-C-linearis_contig9:3111421..31115051690881234.4740872-CDS-C-linearis_contig9:3111421..3111505Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3111422..3111505 +
1622930758.704802-CDS-C-linearis_contig9:3111937..31120471622930758.704802-CDS-C-linearis_contig9:3111937..3112047Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3111938..3112047 +
1690881234.4839518-CDS-C-linearis_contig9:3111937..31120471690881234.4839518-CDS-C-linearis_contig9:3111937..3112047Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3111938..3112047 +
1622930758.7311823-CDS-C-linearis_contig9:3112335..31124861622930758.7311823-CDS-C-linearis_contig9:3112335..3112486Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3112336..3112486 +
1690881234.496807-CDS-C-linearis_contig9:3112335..31124861690881234.496807-CDS-C-linearis_contig9:3112335..3112486Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3112336..3112486 +
1622930758.7603633-CDS-C-linearis_contig9:3112862..31129701622930758.7603633-CDS-C-linearis_contig9:3112862..3112970Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3112863..3112970 +
1690881234.5058055-CDS-C-linearis_contig9:3112862..31129701690881234.5058055-CDS-C-linearis_contig9:3112862..3112970Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3112863..3112970 +
1622930758.7829337-CDS-C-linearis_contig9:3113270..31133751622930758.7829337-CDS-C-linearis_contig9:3113270..3113375Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3113271..3113375 +
1690881234.5168092-CDS-C-linearis_contig9:3113270..31133751690881234.5168092-CDS-C-linearis_contig9:3113270..3113375Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3113271..3113375 +
1622930758.8037636-CDS-C-linearis_contig9:3113777..31138671622930758.8037636-CDS-C-linearis_contig9:3113777..3113867Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3113778..3113867 +
1690881234.5317538-CDS-C-linearis_contig9:3113777..31138671690881234.5317538-CDS-C-linearis_contig9:3113777..3113867Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3113778..3113867 +
1622930758.8210008-CDS-C-linearis_contig9:3114248..31143171622930758.8210008-CDS-C-linearis_contig9:3114248..3114317Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3114249..3114317 +
1690881234.5506651-CDS-C-linearis_contig9:3114248..31143171690881234.5506651-CDS-C-linearis_contig9:3114248..3114317Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3114249..3114317 +
1622930758.8394465-CDS-C-linearis_contig9:3117880..31179671622930758.8394465-CDS-C-linearis_contig9:3117880..3117967Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3117881..3117967 +
1690881234.5632496-CDS-C-linearis_contig9:3117880..31179671690881234.5632496-CDS-C-linearis_contig9:3117880..3117967Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3117881..3117967 +
1622930758.8623576-CDS-C-linearis_contig9:3118361..31184601622930758.8623576-CDS-C-linearis_contig9:3118361..3118460Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3118362..3118460 +
1690881234.5732563-CDS-C-linearis_contig9:3118361..31184601690881234.5732563-CDS-C-linearis_contig9:3118361..3118460Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3118362..3118460 +
1622930758.880817-CDS-C-linearis_contig9:3123812..31239171622930758.880817-CDS-C-linearis_contig9:3123812..3123917Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3123813..3123917 +
1690881234.5870967-CDS-C-linearis_contig9:3123812..31239171690881234.5870967-CDS-C-linearis_contig9:3123812..3123917Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3123813..3123917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16701.1prot_C-linearis_contig9.16701.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 3108015..3123917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16701.1

>prot_C-linearis_contig9.16701.1 ID=prot_C-linearis_contig9.16701.1|Name=mRNA_C-linearis_contig9.16701.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=674bp
MTSNTPTACSPWQSRIRGSRATCCLLAAAAAATAPLTAEAWVAPRTHAAA
RSSQQAAASPSGRMSSTSTSRSRNEHNLCQVQKRGGGDERSGSEGIRLSG
ERMGGSRKRRGALRSQAVDQTSASPTAEYEPMQEGDEVLIDFDENDFDES
EDFFSVEGEEQDDDEADDEHDIARSPVQVIGVEEAMERVLELKKLGPPVP
VKGERARSKRRVPVVAVIGRPNVGKSTVVNRLAKRFKDGSIVFDESGVTR
DRTYKRAWYCGKDFDVVDTGGLVFDDKGGDVFAKEIRQQALIALDEATAV
LMVVDGKAGCNVLDQEIARFLRQQNVPVVLAVNKCESQRYGEVQTADFWC
LGLGEPWPISGLHGDGIYDMMDNVKEHLYDVDETAEEEDNINVAIVGRPN
VGKSSLLNRLFGETRSIVSDVPGTTRDSIDAMFERGGRTYRLVDTAGIRR
KGKVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQDRVLADRVQSD
GRACVVVCNKWDLVEDKNDASYNKAVDYARQMLSPVKWAEVCFTSAKTGQ
RCTKLFDLVDEVAVQHRRRVKTSVLNEVLRDAVLWQAPPSKKSSGASQGK
IYYCNQIAARPPTVAIFCNNPKLFGDNYKRYLDRKFREQLGLKSTPIRFL
WRGKKLRRMEQDNRRNPKPYSDK*
back to top

mRNA from alignment at C-linearis_contig9:3107816..3124089+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16701.1 ID=mRNA_C-linearis_contig9.16701.1|Name=mRNA_C-linearis_contig9.16701.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=16274bp|location=Sequence derived from alignment at C-linearis_contig9:3107816..3124089+ (Chordaria linearis ClinC8C monoicous)
ACCACAGGACGTCTCTTGCTCACCAGACGGCCTATCTGGGATTACTTGAA
GCACAGGGTCCTTCCAGCAGCCCCAGCCGAGCGAGAAATTGCGCACTGAG
AAGTCCACCCTGCTGGGTCTCGTCTGCAGATAAGTAACGCCCCGTGCGAG
ACTTCAACCTCCGGACCGCACACAACACCACCGCACCCCGGGAGGTGACA
TGACTTCCAACACGCCGACTGCTTGCTCACCATGGCAGTCCAGAATTCGA
GGGTCGAGGGCCACTTGTTGTCTGCTGGCGGCGGCGGCAGCGGCAACAGC
TCCTCTCACAGCTGAGGCTTGGGTGGCGCCACGGACACATGCGGCTGCGC
GAAGCTCTCAGCAGGCAGCAGCATCGCCGAGCGGTCGCATGAGTAGCACC
AGCACCAGCAGGAGCAGGAACGAGCACAACCTCTGCCAGGTCCAGAAGCG
GGGAGGTGGGGATGAGAGAAGTGGCAGTGAGGGGATTCGGCTGTCCGGCG
AGCGCATGGGGGGGAGTAGGAAGAGACGGGGGGCCTTGCGCAGCCAAGCG
GTTGACCAGACATCGGCATCCCCGACAGGTGAGGGTGTGTGTGAGGGAGA
GAGCAGGCCAGGAGAGAGAGAGCCTGCATCACAAACAGGCAACGGTATCC
CAAGAGTATTCGGCTAGATAAGGCAACCCCAAGCAGCAGCACACTTGTTT
GCTTCTAGTCTGCGCTTGGAAGAGCGACAGATGTGTTTTTTTGCGGTCAA
AACGCCACAGACCTCTGTTGTTTCGGCGAAGGGTGCAGGGCGTTCCACGC
TTTCCTGATACAGCGTATCTAATGTTGATCGCGTTGGTGGGACTAACAAA
GAGCCGCGCAGCTCCTCTCGTGCTCAATTATTTAAATCTGCACATCTACA
GGTAGCAGTAGTTTGTCCCAACCTACGCGAGAAACCGCAATCTGCGACAG
CCATCTACACGCCCGTTGGTGTAAGTTGCACGAAACTCCGCCCCGGATCG
TGAGCTTCGACTGAGTCGGTAGGTACCACATGAAGAGTTTTTCTACACCC
CCTCCGCGGCTTGACTAAAATCTCATGAACAACAGAGCGGCGCCATGTCT
ACGAATCTACATCAGTACGGTTCGTTTCGTTTGCGATTCCAATGTACAGC
AGTACAGCTGAGCTTCCGCTGCAGGAGGTTCAGCTGCAGACGGGAGTAAA
GTGTGGTCGAATATTCGTCGAGAACAATTCTGTACAAGTACCGGGGTGTT
TCTTGCTAAAAATTAAATTTATCAAAATACTTCGTGTATAATCGGAGTAG
TATCTAACTACGCAGCCCTGAGAACAAAGCCTTATGCATCGGACGTGTCA
CCAGCATTTTTTTTTGTTTCTGTGTTTCTGTGTGTTTGACGTTGCTGCTT
CGATCGACAAACCTTCGTGTACGAACGATCGAAAGCAGAGTACGAGCCGA
TGCAGGAAGGAGACGAGGTTTTGATCGACTTCGACGAGAACGATTTCGAC
GAGTCGGAGGACTTTTTCTCTGTGGAGGGAGAGGAGCAGGACGACGACGA
AGCCGATGATGAGCACGACATAGCCAGGTCAGTCAGCGGATGGCAAGCGT
GCCCGTAGTTGTCGTCCCACTCCTTTCGATCCACCCGCCCTTGTTGTTGT
CATTTCGTCAATTCACCCTGTTTTCTCCATAGAAGGGACGGTTGACGCTT
TTCCCCTTTTCAAATACTTGTCATTGGCCTTTGGCGCCTATTGTAGTGAG
CATGGGCGTCAAGTGGGTGTGTGCACAACAACCGTATTTAATGAACACAG
GCGGTCCTGCTTTGCGTCGAGTGTTTTTTTTGTGTTTTTGTAGCTTGTTT
TCAGCATGGGTGTAGTGACCCCACGAAGAGACATACTGGTATATAGGTGT
CAGGCTCATTCCTCTGCTCCATTCCATCGTCGCTTCCATGCAACAGCGAG
CCTGTGCAAGTGATCGGGGTGGAGGAGGCTATGGAGCGCGTGCTGGAGCT
GAAGAAACTCGGCCCGCCCGTTCCGGTGAAGGGAGAGCGCGCCCGCTCCA
AGCGCCGAGTTCCAGTTGTGGCCGTCATCGGTGAGATAGAGGGAGAAACC
GAAAGACAAGAGAGAGAGGCAGTGCAGCAGTAGCGAGAGACAACAAGGGT
TTTCAGGCAGAATGCCCCCCGCCCGTTGAGGATTTGTCGAGCACGGGGCG
CATGCTTCTTCCCGCAACGTTACAAGATGGTTGCAACCGGTTACCGGTGC
AGCAGTTGCCCTATCAGCAAGCACACAACAAATAAGTACACAGCAAATAA
ATTCAACAGCACGTACAGTAGGAGAAGCCGATGGCGCGATTTCATCTTCC
TTCATGAACACAGAGTTGCGTACGACAAACAGTCATCACGTATTGCACTG
AGTCACCCAGCGCGGCGTTCCTTGCCCCTATGCCCCTGCTGTGCGGGAGA
ATATGCTCTCCTGCTGTTCGAGAACAGCACCCCTCCTGTGCAGACAATGC
CACAAACTACCTGAACTAGTGTGTTGCCTTGTTTCTGACTGTTACGCCCC
CCCACACCCGCACGCTTCGATCTCGACTCGCTGTACACTGGGTGTGCAAA
AACAGGTCGCCCAAACGTGGGCAAGAGCACGGTCGTGAACCGGCTGGCGA
AGCGCTTCAAGGACGGGTCCATCGTGTTCGACGAGTCTGGCGTCACCCGC
GACCGCACGTACAAGCGTGCGTGGTACTGCGGCAAGGACTTCGACGTGGT
GGACACTGGGGGGCTCGTGTTCGATGACAAGGGGGGAGACGTGTTTGCGA
AAGAGGTGAGAGTGGGGGGTGTTACCGCCCACTTTGGCCCTGCGCTGAAC
CGTATGCCACATCTCGGATCGGAGTTCAGCCCTTCCTCCCTCCTGAACAA
CGCTTGCTGCAAGCGGGTGCGTGCCGACCTAGCCGATGAAAACGTTAGAA
ATCCGCGCTGCGTTCGGACTTTCAGGGGATGAGAGAGCCGATGGCCTGAT
GAACACTCGTACGCACGTTTGATTCATTTGCTTCGAATAGGCATCAGGGT
CTGGTACCCCTGACGGCGATGGAGGTGATCGTAGTCGACACCTACCGGCC
CTCCTTTGGCCCCTTTACTCCCGCGTTTTCTCTCCGTCTCCCCTAACCTC
CCGCTACGCCGCCTATCGCATCCTGTGCGGTGTTTGCAGATCCGGCAGCA
GGCTCTGATCGCCCTCGATGAGGCTACAGCGGTTCTCATGGTGGTGGACG
GCAAGGCTGGCTGCAACGTGCTAGATCAGGAGATCGCGCGGTTCCTGCGG
CAGCAGAATGTGCCGGTCGTTCTCGCCGTCAACAAGTGCGAATCGCAGGT
GCGTGGTGGACAAGGGATTGCTGTTGTTTCGAGTAACCTGGAAGCCCCAA
AGACTAGCCAGTGACTCTCCTCTCCCCCCCCCTCTCTTGCTCCATGGCGG
CCTGCACGGGGCTGCGTTTGTTTCAGTCACTAACCACCTGTATTTTCGTG
TCACCTCTCTGGTTGTATTTTTCGTTCCGATCTCGTCGGCTGTCAAACTC
AACTGTTCGCTTCGCTGCACGTTGCATTTGCGATGTTGGCTTGTCTTACG
AAACAGAGATACGGAGAGGTACAGACGGCGGACTTCTGGTGCCTAGGACT
CGGCGAGCCCTGGCCAATAAGCGGCCTTCACGGCGACGGGGTAAGTAACC
GTCTTGCACGCGCTGCTGTGTACAGGTGAATTTTTTCTGATACGCCCGTT
TCTTGTGCACACGCACGCGTTGTGTCGTGTTGTTTCGGGTTCAGGGTATG
TTGGGTGGCGATTGAGAGTGCTTTCGGTGGAAGTAGGGGGTGGTGTAGAG
TGCGTTGATCCTCCTACTGATGGCTCTTCGTCTCGTGCACTTGTCCCAAC
CTCTTTTCATGTTTCCCTTTCCGTACACGGTTGTGAGCCACACCGATACT
GGTGTATCCCCTGCTCTGTGGGGTTCGCAAAGGAGCGGTCCGGGGCATAA
GCACACCTCCCAAGATTAAGAACGCATGGGTCGTTTTCCAAGCCCGCAAT
CGCATCCACTTGTTATGTGATGTGACACTTCTTCTCCTCTCCACGGCCAC
TGTAAACTGATGCGGGGGACAGATTTACGACATGATGGACAACGTGAAGG
AGCACCTTTACGACGTCGACGAGACCGCGGAGGAGGAGGACAACATTAAC
GTCGCCATCGTAGGAAGGCCTAACGTCGGAAAGTGAGCGCCATTGAGTAC
ACAGTACATAAGGGAATAGCCCATAGAGGAGCTTGTATCGGTTATTCATC
ACCGATTTTTGCTCGCGTCACGGTTGCCCCGCCCCATCCTGTTCGGCCAA
CAACGGCCTTACTTTTCGGGTCGGCCCGTTTATTGTTTTAGCTTGCGTAT
TTTTGGGGTCATTTCATTTTTTGGTACGCCACCCCTCTGCGACATAAAGC
ATGTGTACATTTGGCTCTGCAGCCCTCAAATGTTTGCCTACTCATGTCCT
CCCTTCTCCGCAACGGCCAGGTCGAGCCTCCTAAACCGGCTTTTCGGAGA
GACACGGTCGATCGTCAGCGACGTGCCGGGTACCACGCGCGACTCGATCG
ACGCTATGTTCGAGCGGGGGGGCAGAACCTACCGGCTCGTGGACACGGCC
GGCATCCGCCGGAAGGGAAAGGTGATGCTTGAACCATTAGATGATTCCCC
TAACGATATTTTTGAGGGGCGGACAAGCCGCCGTGCAGTCTTCGTACTTG
CCATGGCACGTGAATCGAAGCAAAGGCGAGTTGGGCGAGAATTGACGAAA
TATCTCTCGGTCTTACTTGTGGTGGTGTGCGACTGAAGAGCCTTTTCGAA
GAGTCCGTTGTGGGAGCAAACTCTTTTGTCTTGAGCCTTTTCCCGCATGG
TCGACAGGTAGTCGTTTTTTTGCCTGTGGCAATTTATTCTTGGCGCAGCA
GTGATCGTGTCTGTAGCTCTCAGCGTGGCCGTGCCGTTTTTAAGGATACG
CGCTCGTTGACAGTAAAACTCCCCTCGCTGTATTGATGCCTTTTAAGGTG
GACTACGGTAACGAGTTTTTCATGGTGAACCGAGCGTTCAAGGCCATCAG
GCGAGCGGACGTTGTTCTACTCATGGTGGATGTCGAGGCGGGCATCACAG
ACCAGGTATACCCCAACGCGCGTTAGATTTGCTGTGTTTTTTGGGCTGCC
TTCTGTACATGAATATTTGTATGTGTACTTCGAAGTATACGAAGTATGTA
TATGATCGAGCGTTTCGCCAACGCAACCAACAATCTTGCCGTTAAGCCTT
CTTCGCGTGCAATTGCTGCTACTGTGTACACCTTGCTCGTATGGACGTTT
TGAGTCGGAGGAGACTTCCGTGCCCCTTTTCAGTTGTGACGAACGTCGAC
AATCGAAATTGAACGCGGGCCCATTGATCCGCCGGTCTCGATTCTCCGTG
TTCAGGACCGAGTGCTGGCGGACCGTGTCCAGTCGGATGGCCGTGCGTGC
GTGGTAGTGTGCAACAAGTGGGATCTGGTGGAAGACAAGAACGACGCCAG
CTATAACAAGGTGTGACATTCACGGCCTAAAAGTGCCGAAAGTGCTGTTT
TTTTTTGGGATTTTTTTGATTTTTTCACGTTGAAACCTGAGCAACTACAC
CAACGACTTCTGTGTTGGCGGAAACCTCATTTTTTCGGGAATAGTTCTTC
CACTTTGTTTGCAACGTTGAATTCGTGCCCTATGCGCCAAACGCTCTTAG
CAGCGTGCAGGTAATGCTTGATGCGACTCACGGCCGAAAATATTGCGACC
CTTCGCGTTTAGTGGAAGGCCCGGAGTGCTTATTGTAGTGCGCTTTGTTG
GGATGCGAGGTCTTCATTCAAACGATTCTGGCAGAGTGATCAGTTCTACG
CATCGCCGTTAGTTTTTCAGCTTTCCCTCTTGCCTTTTTTTGCTGGGTCT
CGCCCCTCGTAGGCGGTGGACTACGCGAGGCAAATGCTGTCTCCGGTGAA
ATGGGCCGAGGTTTGCTTCACGTCCGCGAAGACGGGACAGCGGTGCACCA
AGGTAAGGAAACGGTCTGAGAGAGAGTTTTTTTGGAGTGCTGCGAAACCC
TCGTCGCTTGATACTTGCTGAACAAATCATAGAGGAGCACCTTCGCAGTC
ATGGCGGGTGGCGCGCGCTTCTCTACAAATATGCATGCGCATGCGCCTAA
GGTAGTAGGGGGAGCAGGTTGGATCGACAGAGCTTACAGGGGCTGCAGGT
CGATTTCAGCCCGACAGGCGTTGCGCTTCCGTCTCTTTCTTTGCTCGAAC
AAAGGAGAAACACGCAAGCCTACACGACAAGCGACCTAGCGCTCACGCTG
GGAACATTCTGCCACCTTCGCCTCATTGCCCTACCGGCCTGTCTGCCTCT
ACCAATTGTATTCCACGTGATTGTCTGTCTCAGCTGTTCGACCTGGTGGA
TGAGGTGGCCGTTCAGCACCGGCGTAGGGTGAAGACGAGCGTGCTCAACG
AGGTGAGTGACGACTGCACTCCCTCGCCACGTTTGCGGTTTTTACTGCAG
GGGGGTATTTCTCGCCACTCAAGGACTTGGACCGGTGGAATCTCTGACGA
TGCGAGTGAGCACTTGAATAACTGTCGCCTCCAACCGCCACAATCAAGCA
GATCGAAGTGCTCGCGTAGTGTTTTTACAACTCGATCGCGCATGAGATAC
AAGTATACCCTTTTCACGTTTGGGTGGCGAATTTATTTTGCTAGGCGATT
CGAAACATATTTAGGTCCTTGCGTTCATGTGTTCCATGATTTATGTCACA
TGGCTTACAACTTACAACCTTGCTCTGCAGCGTGCCTCTAAGAAAGGGTC
GTTCTAAGCGAAGCAAAACTTTCTTTGATTTCTTGGTTGTCTTGGAATTC
TTGGACTTTTCCCGAGAAATCCAAGAAAATGAAGGCGGGTGCTTTTTGAA
GGGTCACTTCGTTTTCTTGTTTTTCTTGGATTGTTGGATTTGTTGGGTCC
TACGTAATTTTTTTTGACCTAAACAACAAACAAGCAAACATAGAACAAGC
GGCCTAATCATGTGATGGCCAGGAAGATTCCTGGAATATAAAGATGTTAG
GGTTTTCGAGTTTTTGTACGACGGATCTTCCAGGGGTGGAACAGGCTCAA
ACTCTACCATCTTAAAAAAAAACTCGAAAACCTATACCTAACCTACGGTC
ACGTGAGCTATTCGCACTGAAATTTCGGCATCTACATGGAAAGAACACCC
GTGCAGACAACAAGCAAAACGCACCCACGCCCCGTCCCCTCCCTGTGCAC
ATCCTCTCGCGCGCTCATAGCACAGACAAAGGCAACCCGAGACGAACCAT
AATACATAGATCGAAAGGGTGGCTTGACCATGCCCGTCGCATCTCTTGTG
TGCAAAGTTATCTCCTGAAAACGGAACAGATGCGTTGCGAAATGGACACA
AAAAACTTGACAAAAGCAGCAGCAGCACCGTTGCACCGATTTGATCTTCT
TTTCTCAAGATAATGAAAGCCTCCCAGCTTCAACCGCCGTGCAAGCGAGA
CGCACAACAAGACACGGCTCTTGGGAATAGCTTTTTCATGACTGTTAGAC
GTGGGCCTTAGCCCCGTAACGACTTTTATTTTTTATTTTTTTTAAACAAG
AGGGGCACACATATATACAATTACCTTGGTTTTAGACAAGGATCTGGGAA
CACTCAAAGCTTGCCACTGGCGGAATCATGATTCTTCCTGCGCTGCAGAA
CCTGTCTGCAGGACACAAGCTACAATTCACGCTGTTCACAATTTTTATCC
GCACTCTGAACGGCAAGAAATGTTGAAATTAGTGTGTTTTCGGACCTTCT
CGGGCTGTGGATGCAAATTTGCTACTTCATCTCAACAATCTGTACAGCGT
GATTTGTAGCCTTGTTCGTTGCGCAGACAACACAAAAACCCGCTCCTCAA
TCCAACACGCCAATGTAGAGCAGCGTGTTCTGGAATTGTCGCTTTGCTGC
GCAAAACGGTGGTCGGGGAGTTTTTTTTACTTCGCGTATGAGCGAAGAAA
ACCCCCCGACACCGCTCGTTTGGCGCACACCTCCAGCCACCTCCCGACCT
CCCCGAGCGAAGCTAACCGCATGCACTGAGAGCTCTACTCGCGCTCTTTC
TTGGAAGTCTTTGGGCGTGTTTCTCCTCGACGTATCGGTGCCAAAACCTG
TCTCGCAGCATTTCGCGGAGGCTAACAAAATATCAAAAAAATGGCGTGCG
GTGCATTTCGCCGAAAGCACACCAGCCGTTCTTCGCAAACGCTGCGAGAC
AAATTTTGGCACCGACACGTCGAGGAGAGACACGCCCAAGGGCTTCCAAG
AAAGAGCGCGAAGTAGAGCTCTCAGTGCATGCGGTTGGGTTTGCCTGGGG
AGGCCGGGAGGTGGCTGGAGGTGTGTGAGAAACGAGACGTAGCGTGTGCG
GTCGAACAAAAAGCGGGCAAGACACGAAAAAGTATATATTTTGGTGCATA
AACCAAAAAGATAAAAACGCATCCACACGACACTCAGGAGCTACCCCAAA
CGACACCAACCACATGCGCTGAGAGCTCTACTCGCGCTCTTTCTTGGAAG
CCCTTGGGCGTGTTTCTCCTCGATGTATCAGTGCCAAATTCTGTCTCGTA
GCGTTCTGCAAAAGCCGACAATATATCAAAAAAATGACGTGCGGTGTATT
TCGCCGAAAGCACGCCAGCCATTATTCGCAAACGCTGCGAGACAGATTTT
GGCACCGATACGTCGAGGAGAGACACGCCCGAGGGCTTCCAAGAAAGAGG
GCGAGTAGAGCTCTCAGTTTGTGTGGTTGGGTTCGTCGGAGCGGCTCTCG
GGGCAGCTGGAGGTGTGAGCAAACCGAGCGGTCTCGGAGCGTTTGCATTT
TTTCAACTGGGTTTGGCTGCGGAACAAGAAATTCGAGAGTTGTGATTGGT
CTCGAAACTGAAAACCAGTCTTTTCATACCAGAATGTCTGGAGACCACGG
GACACATTTTGGGCCCAAAATTGGGGCTAAGGCCCACACGTAATTGTGGC
TTCTTTGTGTACAAAGTTATCGTCGGAAAAGTGGCCTGAAATGTGTGTGA
GGGGTCTCATTACTCTCTCCCTCTTTTTTGCTCTTGCTATTCGGTGGTTG
CCTTTTGTTTTCGCTCGATGTGGGAGCGTGTGTGTGTGTGTGTGTGTGTG
TGTTTTTTTAAACCGTCTTGGTTCAAATATAAAGGACCGAAAAAGTCGAA
CATCTAACCATCCGCGTTTTTTTTGTTTTTTTCCCAACCCAAAAAATTAC
GTAGGACCCACCCTCAGTGATTGACCCCAACATCGCCCAAATCAACAGCG
GTTACTCTTATCGGCCACCACAGAATACGCTGTTGCGTAGGAGTCGGTCC
TGGGGTAGTTCAAAGTCCATGGCGGCAAGTAAGAAGCGCCGCGGAGGTCA
TCTTGTCATTTTCGACCAGATCAACCGACCAAAGCGACCATATTGCAGCG
GATTTTCATCAGTGCACACAACACTTTCCGTTGCTCTCTTCATAGATTAC
CTTCTCGAAGTACTAAGCTCTAACCTCCAAGATTGTGGCCTCCATCTACT
GTTGTCACTCGGATGCGCGTGGGGTAGCAGTGGGCTGCTTCAATAAAGAG
AAAGAAGCGTCGCTGTGTAAGTAAGATGATTATTTTGTTTTTTCAACGGT
TGGTCCGCATTTTTGCTTCTGGCGTTCGAAGCTACCCCCACAGCGATGCC
TCTCATTCTTGATTGAAGCAGCCCGCTGCTACCCCACGCCCACCCGAGTA
ACAGCAGTAGATGGAGGCAACAAAATCGAAGGGTTTAGCTTCAGAGGTGG
TCTATGAAGCGAGCAACGGAAATTGTTGTGCTTTGCTGTGTGTTTGTTGC
AATTCAGGGTAGCAAACCCGCTCTTTTTCTTTTTTTCCCGCTAAGAACGA
CTCCACCTGAAATCACTGAAAGCCAAGAATATTGTTTTGCTTTGTTAAAG
ACGGCCCAATACAACTCTCCTACTTGTCTCGTTTTTGGCGTGGTTTGCCG
CACCCATCTATCCAGGTCCTACGCGATGCCGTGCTTTGGCAAGCACCACC
GAGCAAGAAATCTTCGGGTGCGTCTCAGGGGAAGATCTACTACTGTAACC
AGGTGAGAAACGTGAAATGTCAGAGATCAGTATGCCAAAATGCAGAATGC
AATTTCGCCTTGCGCTCAAAGATACTTATCTTTTCGTAGATGGGGCACGT
CAAGCGTGACCGGACGAGGATGTGCTAAAGGGAAAGGTCTACAACCCTGT
GTCGGCCGCGAAAACGTTTACACCTGGTGATAGACTTTCCACAAACTAGT
TTCGATGTTCCCCGCCTGGGTTTGCGTTTGGGTGCGTTTATCAAGTAGAG
AAATGGATGTCGTGTGCCAAATCCGTGAGAGTGACTGATCCCTGCGAAAT
CAGCGCGTTCATCGTTTTCTCGCGCACCGAAGACGGACGGGCATCAGTTC
TCACAATTCCCGCATGGTGGTGCTCTTTCGCCTGTTTTTCACACAGATCG
CCGCCCGGCCCCCGACTGTGGCTATCTTCTGCAATAACCCCAAGCTCTTC
GGAGACAACTACAAGCGATACCTGGACCGCAAGTTCAGGGAGCAGGTCTG
TTTACAGCCTCGATAGTTCGTGACACACCCGCCTTTGCTAGTTCGTGTGG
CAACAAGAGCTGTTTGCAAGGGTGAAGACGAGCAATCGTGTAGCGCTGTT
GGTTCTAGTTTCGAGAAGGCAGGTGGTTCCCTCCGACTGCCAGCGTAGGA
ACGCTCTTGGCATGCACGTTGTCGCTGAAACGGGGTACCAACCCCTTCCC
TATCCTGCACGCAACGGTGCGTAGGATTTAGCTGGATACTTGATAAAGGC
ACCACTCGTTCTCTTTTCTGAAATGCGTTGAGCGAAAGACCGTTGATGTT
GCAAAACGGCATTGCCGATTACTGTTGTATTCTTCTGCGCGGTTTCCGAT
CACTTGATGAATGTGTTGGATTATGAGATGAGGCCTCCTGTCCCGGCCGG
TGGTCCCACCCAAACTTTCGTTACCTTCTCTTTTTGTGCACTCAGCCCAC
CACCGGTCTGGCATTAGGTTGGCCCTTACCCAAACTTTCATTTTGGTGGG
TACACCAAAAGCTCATTCGCGGGGCGGAGGACCGCAATATCCGCCCGCAC
GACAAAAACAATGCTGCATTGTCTCGGAATGCATGTAGCCAATCCTTCCT
TGCGGGCGCCAACCAATCCTTGCCGGCACAATTCCGTCGAAAGAGACAAG
CGATACATGAACACCGCACCCGGCACGCCGCCATGGGTTGCGGGGGGAAA
GCAAGTAGAGTACGGTAGCCTGAACGCACGACACCCTTGCGACCGACCGG
ATGTAGGGTCTTGCTCAACGCACGGCCGTGTCGTCGAAAGAACGCGACCC
TCTGTAGTAGCGCAGTGTCGCAGCGCAGTCTCGCCACTGTCTTACCCTTG
CGGAGGAGGCGTACACCGAAGAAATGCTTCCCGCACATCCACAACTCAAC
CGTCGAAATATCTACCGGCCTGTGTGCACCTTAGGCGAAAGGAACGGTAG
GCAGCAAATGCCTAGATCCTCGAGAACAACCACCACGTAGATACCCACGA
CGGGTTCGTAAGCGTACATGGCACACCTGGGCGTCGGGATGATCGAAGAG
AAACGCAATGCGGCGCCACTGCACGCCGCGATTAGAACTGAGACGACGGA
ACGACGGGCCTGCGCGGTGTGTGTCGCCGTTGAATCGACACAGCAAAGAT
GAAGAAACAGAAAACCCACAACGCAGAAACAATTAACACCTGCTAGCCAA
ATACTCCGAGTAGTAAGGTATCCCCGCATGACGATAGAGCGCGATCCACT
ACCGGCGGCGACGGCGGCGGCAAAGTAATGGTGCGGTATAGCGGCAAATT
TTAGCGCGGTCGGAGCGGCAGAGAGCGACACGAGTAACATACTCTGAGCT
CTGCATGCGTCGGGCAGGCGCTTTTACCCGGCCCGGTACGAACCGGGAAA
GCGGAGAAACCAAGGGCATTCGTGTACGAGCTGTCCGCAAGCACATCGAT
TAATACGCTAGCGAAATCCGTGCGCGGATGGTTGGACGGCCACATGTGGT
CTGCAGAAGGCGCAGAAAATGCAGCTTTCCACGGCGGTGATTATCATGAC
CGGAGTGACACGTAGTCGCGTGGTGGCAAACGTAGAATTGCGAGACCCAA
AGGCCGTGTTCACGGGGATTGCCCGGGAAAACTTGGCCGGGCAGGCCAAG
GGACAAAATGGCGTTGTACGAACCACCCGCCAAGTGCATGAAGGCGCGGT
CGTGAATTACACGTGGTGCAAAACCATGGGCACAAACCAGAGACACTAGC
TTGTGGCAGCATGGTTATGGCAAGGCCAGGTATGGCCGGCGGCCCGCGTC
CCCACCACGATGATGAGGGGAATCGACGACAGCTTGGAAAGAGGGGGGAG
TTCGCACGGAGCGGCTTGGAGGCGAGGAGCCCCCACAGCAGCGTGTGTGC
AGACGGAACAATAAAGCTGGATTGAACAATGGTAGCATCGCAAATCGAAC
AATCTACAGATGTTAGCTAGGGTCACACACGAGGGGGTAAAACCTGGGGC
TTTTTTCTTCTTTTTCTGTTTCTTTTTCGCCCCACCTTCCTCCTGTGGTG
CTTGCCTTGGATTTTATCGCGAGAAGGGTGAAGCCATCCCTGCTAAGTCG
AAGTTTGGTACTCACGTATGTACGATGTGCTTGTTACGCTGATGATAGCC
ACACGCACACGCCATTGTGCTTGGTTCGCGGCCACACGCAGTCGTGGGTA
GATGCCGTTATGTGCTTGTAGTGACATACTGTCGTCCGGGCCGTAGCTAC
GTGTTGGTTGTATTCAAGGCATTTAATGTTTGGGTTATTCTATCTGATCG
TGTGTATTACGCGTTTACTCTCCGGCACGCATACGCATGCCAAGCCGTTT
CTGCCGCACGCCGTTGCATCTAAATTTGGCGCACGCGCTGTCGTGCGTGA
TCTGATATTTTCGGCGTACAGGCTGCTGATACAGACCTGTTCTCCGGCCG
CCAGCCGTACGTACGAGGTGCTTGTCACGCTGATGATAGCCACAAGCACA
CGCGGTTGTACTTGGTCGCGGCCACACGCAGTTGTGGGCAGACGCCTTGT
TGTAGTGATCTACTGTCGTCTGGTTGATGTGCGCCCTAAACGCAATTCCG
GACTGCGGTGCCTAGCACCGTGTTCGCGCGATGTTGCGGCTAGCACAGCT
CTGACACAACCGCGCTGTTTTATACAAGTACTGCGGCACGCAGTCATTAC
ATACCCCGCGCCGTTGCGTCCAACTTATGGCTCACGCGCTGTCGTGCGTG
GCTTGAAAAATTCGGCTTACAGGCTGCTGGTACACGCCTTTGTGCTCCGG
CCGCCGGCTGTATGTACGATGTGCTCTTATTCCGCTGATGATTGCCACAC
ACACACGCCATTGTGCTTGGTCGCGGCCACACGCAACTGTGGGCAGACGA
CGTTATGTGCTTGTAGTGACATACTGTCGTCCTGGCGGTAGCTGCGTGTT
GGTTGTATTCATGGCATTTGTTGTTTGGGCTACTTCATCTGATTGTGTTT
GTTACGCGTTTTCTCTCCGGCACGCATACGCATGCCAAGCCGTTTCTGCC
GCACGCCGTTGCATCTAAATTTGGCGTACGCGCTGTCGTGCGTGGTCTAA
TATTTTCGGCATACAGGCTGCTGGTACAGACCTGTGCTCCGGCCGCCAGC
CGTATGTACGAGGTGCTTGTCACGCTGATGATAGCCACAAGCACACGCGG
TTGTGCTTGGTCGCGGCCACACACAGTTGTGGGCAGACGCCTTGTTGTAG
TGATCTACTGTCGTCTGGTTGATGTGCGTCCTAAACGCAATTCCGGACTG
CGGTGCCTAGCACCGTGTTCACGCGATGTTGCGGCTGGCGCAGCTCTGAC
ACAACCGCGCTGTTTTATACAAGTACTGCGGCACGCAGTCATTACATACC
CCGCGCCGTTGCGTCCAACTTATGGCTCACGCGCTGTCGTGCGTGGCTTG
AAAAATTCGGCTTACAGGCTGCTGGTACACGCCTTTGTGCTCCGGCCGCC
GGCTGTATGTACGATGTGCTCTTATTCCGCTGATGATTGCCACACACACA
CGCCATTGTGCTTGGTCGCGGCCACACTCAGCTGTGGGCAGACGACGTTA
TGTGCATGTAGTGACATACTGTCGTCCGGGCGGTAGCTGCGTGTTGGTTG
TATTCATGGCATTTGTTGTTTGGGCTACTTCATCTGATTGTGTTTGTTAC
GCGTTTTCTCTCCGGCACGCATACGCATGCCAAACCGTTTCTGCCGCACG
CCGTTGCATCCAAATTAAGCGCACGCGCTGTCGTGCGTGGTCTGATGTTT
TTGGCATACAGGCTGCTAGTAGACGCCGTTGTGCTCCGGCCGCCAGCCGT
ACGTACGAGGTGCTTGTCACGCTGATGATAGCCGAACGTAGTTGTGGGTA
GGCGCCCTAATTGACATAACAGCACCACCTTTTACGCGAAATTGCGGCTG
GCATAGCTCTGACACAACCGCGCTGTTTTATACAAGTACTGCTATCATAG
GTGTGGGCCTTAGCCCCAATTTTGGGCCCAAAATGTGTCCCGTGGTCTCC
AGACATTCTGGTATGAAAAGACTGATTTTCAGTTTCGAGGCCAATCACAA
CTCTCGAATTTCTTGTTCCGCAGCCAAACCCAGCTGAAAAAATGCAAACG
CTCCGACACCGCTCGGTTTGCTCAAACCTCCAGCTGCCCCGAGAGCCGCT
CCGACGAACCCAACCACATAAACTGCGTGCGGCAGACACAGCACAACGAG
TGTGAAAATTGCGTGGTAACAGGCGGCGTAACAATCAGCCAGCTAGATAC
GGAGTAGTTCGGATGAAACAGCTAGTGCGGTAGACACAACACAACAGCGT
GAGACACTACGTAGCTTCAGGCGGCATGATCACAGCAGCGTGCGACGGGC
GGCCCAAACACAGTATCGTGTGTAGGTCCGCCACAACATGCAGTGAATGG
AAAATTAAAAAATACCGCTAAGTTCAGATGGAGAGGCACGACAAGGCGTG
CAAGATTGGTGGCATAACAAGTCACCAACTGCACAGGTTCTGATGACACA
GCTAGGTTGTGATCAAATATGCGCAACAGCGTGCGGCAGGCACAGCAGCA
CAATAGCGTGTTAAACTTCGGGATAACAGGCGGCACAGTCACAGTCGCGT
GTGACGGATGAAAAACCGAGGTGCTGAAAAATTTAGCATCAACGCACTGA
GGCAGCACCCAGAGGGATGGCACCCAGAGGGATGTAGCATCGATAATGCG
TGAGAGGTTGGCGATACAGCCAACAAGGTCACAGTACCATGACAGCAGGC
TGCTTAAGTGGCCAATACCCAAAGCAGGCCTATCTCACCTATGTTGGCGA
GCTGTTCCTGAAACGGGTAGGGTAAATGGTCTGCGTCCATGTACCTACGT
ATCGGTCCTGGAGGCCGCATCCTGGTGTGCTGGCGACGGAGGACAGGCTC
TCATACGGTATAACTTGGGAAGGGCGGGGCGTGCACGGTCGCGCCCGCCG
GCCTACTTGAAATCCTCTATTTTTTTCCCTGCCTACCACGTTGCTCGCGG
TAGGGGGCAGGGTTTCAAGAGACTGATCTCGGTTGCGTTAATTCCTCCAG
TTATTTTGGCTCACGGTTGCTTCTACTTCCGTCCCGGAATCTGTTCCATC
CGACGGGCCCCGAGATTACTGCTGTAGACAGGCGATCTCTCTTTCACCGC
CCGGTCCCGCCCCGGCATATTTTATAATTGTGGGTGTGACCTACCAACCG
CCTCCTTCCTAACTCCCCATGTCTCTCACTAGCCTGCCGCGTGCTTCTCC
CTGACGTTCCCTGATCCGATGTGTCGATTTCTCATGCCATGGATTAGCTG
GGCCTCAAGTCAACACCGATTCGGTTCCTGTGGAGGGGGAAGAAGCTTCG
CAGGATGGAGCAAGACAACCGCCGGAACCCCAAGCCGTACTCCGACAAGT
AGTTGCGATAGGAAGCACACCGGGACAGCTTCCTGTGCAAATTTGCTCTA
GCTTTTCTTAGTCTGGCAGCCCCTGCTGTTTGGCGGTCTCTCTCAGGAGG
AATTCACACAGGTGGCCGGAGCAGCGGTGGTAGTAGTTGATTTCAAATTT
CGTGCTTTGAGGACCGACCATAAA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig9:3107816..3124089+

>mRNA_C-linearis_contig9.16701.1 ID=mRNA_C-linearis_contig9.16701.1|Name=mRNA_C-linearis_contig9.16701.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4044bp|location=Sequence derived from alignment at C-linearis_contig9:3107816..3124089+ (Chordaria linearis ClinC8C monoicous)
ATGACTTCCAACACGCCGACTGCTTGCTCACCATGGCAGTCCAGAATTCG
AGGGTCGAGGGCCACTTGTTGTCTGCTGGCGGCGGCGGCAGCGGCAACAG
CTCCTCTCACAGCTGAGGCTTGGGTGGCGCCACGGACACATGCGGCTGCG
CGAAGCTCTCAGCAGGCAGCAGCATCGCCGAGCGGTCGCATGAGTAGCAC
CAGCACCAGCAGGAGCAGGAACGAGCACAACCTCTGCCAGGTCCAGAAGC
GGGGAGGTGGGGATGAGAGAAGTGGCAGTGAGGGGATTCGGCTGTCCGGC
GAGCGCATGGGGGGGAGTAGGAAGAGACGGGGGGCCTTGCGCAGCCAAGC
GGTTGACCAGACATCGGCATCCCCGACAGATGACTTCCAACACGCCGACT
GCTTGCTCACCATGGCAGTCCAGAATTCGAGGGTCGAGGGCCACTTGTTG
TCTGCTGGCGGCGGCGGCAGCGGCAACAGCTCCTCTCACAGCTGAGGCTT
GGGTGGCGCCACGGACACATGCGGCTGCGCGAAGCTCTCAGCAGGCAGCA
GCATCGCCGAGCGGTCGCATGAGTAGCACCAGCACCAGCAGGAGCAGGAA
CGAGCACAACCTCTGCCAGGTCCAGAAGCGGGGAGGTGGGGATGAGAGAA
GTGGCAGTGAGGGGATTCGGCTGTCCGGCGAGCGCATGGGGGGGAGTAGG
AAGAGACGGGGGGCCTTGCGCAGCCAAGCGGTTGACCAGACATCGGCATC
CCCGACAGCAGAGTACGAGCCGATGCAGGAAGGAGACGAGGTTTTGATCG
ACTTCGACGAGAACGATTTCGACGAGTCGGAGGACTTTTTCTCTGTGGAG
GGAGAGGAGCAGGACGACGACGAAGCCGATGATGAGCACGACATAGCCAG
GTCACAGAGTACGAGCCGATGCAGGAAGGAGACGAGGTTTTGATCGACTT
CGACGAGAACGATTTCGACGAGTCGGAGGACTTTTTCTCTGTGGAGGGAG
AGGAGCAGGACGACGACGAAGCCGATGATGAGCACGACATAGCCAGGTCA
CCTGTGCAAGTGATCGGGGTGGAGGAGGCTATGGAGCGCGTGCTGGAGCT
GAAGAAACTCGGCCCGCCCGTTCCGGTGAAGGGAGAGCGCGCCCGCTCCA
AGCGCCGAGTTCCAGTTGTGGCCGTCATCGCCTGTGCAAGTGATCGGGGT
GGAGGAGGCTATGGAGCGCGTGCTGGAGCTGAAGAAACTCGGCCCGCCCG
TTCCGGTGAAGGGAGAGCGCGCCCGCTCCAAGCGCCGAGTTCCAGTTGTG
GCCGTCATCGGTCGCCCAAACGTGGGCAAGAGCACGGTCGTGAACCGGCT
GGCGAAGCGCTTCAAGGACGGGTCCATCGTGTTCGACGAGTCTGGCGTCA
CCCGCGACCGCACGTACAAGCGTGCGTGGTACTGCGGCAAGGACTTCGAC
GTGGTGGACACTGGGGGGCTCGTGTTCGATGACAAGGGGGGAGACGTGTT
TGCGAAAGAGGTCGCCCAAACGTGGGCAAGAGCACGGTCGTGAACCGGCT
GGCGAAGCGCTTCAAGGACGGGTCCATCGTGTTCGACGAGTCTGGCGTCA
CCCGCGACCGCACGTACAAGCGTGCGTGGTACTGCGGCAAGGACTTCGAC
GTGGTGGACACTGGGGGGCTCGTGTTCGATGACAAGGGGGGAGACGTGTT
TGCGAAAGAGATCCGGCAGCAGGCTCTGATCGCCCTCGATGAGGCTACAG
CGGTTCTCATGGTGGTGGACGGCAAGGCTGGCTGCAACGTGCTAGATCAG
GAGATCGCGCGGTTCCTGCGGCAGCAGAATGTGCCGGTCGTTCTCGCCGT
CAACAAGTGCGAATCGCAGATCCGGCAGCAGGCTCTGATCGCCCTCGATG
AGGCTACAGCGGTTCTCATGGTGGTGGACGGCAAGGCTGGCTGCAACGTG
CTAGATCAGGAGATCGCGCGGTTCCTGCGGCAGCAGAATGTGCCGGTCGT
TCTCGCCGTCAACAAGTGCGAATCGCAGAGATACGGAGAGGTACAGACGG
CGGACTTCTGGTGCCTAGGACTCGGCGAGCCCTGGCCAATAAGCGGCCTT
CACGGCGACGGGAGATACGGAGAGGTACAGACGGCGGACTTCTGGTGCCT
AGGACTCGGCGAGCCCTGGCCAATAAGCGGCCTTCACGGCGACGGGATTT
ACGACATGATGGACAACGTGAAGGAGCACCTTTACGACGTCGACGAGACC
GCGGAGGAGGAGGACAACATTAACGTCGCCATCGTAGGAAGGCCTAACGT
CGGAAAATTTACGACATGATGGACAACGTGAAGGAGCACCTTTACGACGT
CGACGAGACCGCGGAGGAGGAGGACAACATTAACGTCGCCATCGTAGGAA
GGCCTAACGTCGGAAAGTCGAGCCTCCTAAACCGGCTTTTCGGAGAGACA
CGGTCGATCGTCAGCGACGTGCCGGGTACCACGCGCGACTCGATCGACGC
TATGTTCGAGCGGGGGGGCAGAACCTACCGGCTCGTGGACACGGCCGGCA
TCCGCCGGAAGGGAAAGGTCGAGCCTCCTAAACCGGCTTTTCGGAGAGAC
ACGGTCGATCGTCAGCGACGTGCCGGGTACCACGCGCGACTCGATCGACG
CTATGTTCGAGCGGGGGGGCAGAACCTACCGGCTCGTGGACACGGCCGGC
ATCCGCCGGAAGGGAAAGGTGGACTACGGTAACGAGTTTTTCATGGTGAA
CCGAGCGTTCAAGGCCATCAGGCGAGCGGACGTTGTTCTACTCATGGTGG
ATGTCGAGGCGGGCATCACAGACCAGGTGGACTACGGTAACGAGTTTTTC
ATGGTGAACCGAGCGTTCAAGGCCATCAGGCGAGCGGACGTTGTTCTACT
CATGGTGGATGTCGAGGCGGGCATCACAGACCAGGACCGAGTGCTGGCGG
ACCGTGTCCAGTCGGATGGCCGTGCGTGCGTGGTAGTGTGCAACAAGTGG
GATCTGGTGGAAGACAAGAACGACGCCAGCTATAACAAGGACCGAGTGCT
GGCGGACCGTGTCCAGTCGGATGGCCGTGCGTGCGTGGTAGTGTGCAACA
AGTGGGATCTGGTGGAAGACAAGAACGACGCCAGCTATAACAAGGCGGTG
GACTACGCGAGGCAAATGCTGTCTCCGGTGAAATGGGCCGAGGTTTGCTT
CACGTCCGCGAAGACGGGACAGCGGTGCACCAAGGCGGTGGACTACGCGA
GGCAAATGCTGTCTCCGGTGAAATGGGCCGAGGTTTGCTTCACGTCCGCG
AAGACGGGACAGCGGTGCACCAAGCTGTTCGACCTGGTGGATGAGGTGGC
CGTTCAGCACCGGCGTAGGGTGAAGACGAGCGTGCTCAACGAGCTGTTCG
ACCTGGTGGATGAGGTGGCCGTTCAGCACCGGCGTAGGGTGAAGACGAGC
GTGCTCAACGAGGTCCTACGCGATGCCGTGCTTTGGCAAGCACCACCGAG
CAAGAAATCTTCGGGTGCGTCTCAGGGGAAGATCTACTACTGTAACCAGG
TCCTACGCGATGCCGTGCTTTGGCAAGCACCACCGAGCAAGAAATCTTCG
GGTGCGTCTCAGGGGAAGATCTACTACTGTAACCAGATCGCCGCCCGGCC
CCCGACTGTGGCTATCTTCTGCAATAACCCCAAGCTCTTCGGAGACAACT
ACAAGCGATACCTGGACCGCAAGTTCAGGGAGCAGATCGCCGCCCGGCCC
CCGACTGTGGCTATCTTCTGCAATAACCCCAAGCTCTTCGGAGACAACTA
CAAGCGATACCTGGACCGCAAGTTCAGGGAGCAGCTGGGCCTCAAGTCAA
CACCGATTCGGTTCCTGTGGAGGGGGAAGAAGCTTCGCAGGATGGAGCAA
GACAACCGCCGGAACCCCAAGCCGTACTCCGACAAGTAGCTGGGCCTCAA
GTCAACACCGATTCGGTTCCTGTGGAGGGGGAAGAAGCTTCGCAGGATGG
AGCAAGACAACCGCCGGAACCCCAAGCCGTACTCCGACAAGTAG
back to top