mRNA_C-linearis_contig9.16698.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16698.1
Unique NamemRNA_C-linearis_contig9.16698.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3079967..3080343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size379
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930706.9909143-CDS-C-linearis_contig9:3079966..30802991622930706.9909143-CDS-C-linearis_contig9:3079966..3080299Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3079967..3080299 +
1690881207.2658308-CDS-C-linearis_contig9:3079966..30802991690881207.2658308-CDS-C-linearis_contig9:3079966..3080299Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3079967..3080299 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.0108352-UTR-C-linearis_contig9:3080299..30803431622930707.0108352-UTR-C-linearis_contig9:3080299..3080343Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3080300..3080343 +
1690881207.2758684-UTR-C-linearis_contig9:3080299..30803431690881207.2758684-UTR-C-linearis_contig9:3080299..3080343Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3080300..3080343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16698.1prot_C-linearis_contig9.16698.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 3079967..3080299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16698.1

>prot_C-linearis_contig9.16698.1 ID=prot_C-linearis_contig9.16698.1|Name=mRNA_C-linearis_contig9.16698.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=111bp
GVHVFVVAKRSLGGGEGGADLSPLLPQKLEVKQSPRSSSFREPTFRHHLE
VYASRVVLFACAASGCVGAAAGVTTELVPALAPRYKLACRSMFRSILGRL
ANLNKRGGKL*
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mRNA from alignment at C-linearis_contig9:3079967..3080343+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16698.1 ID=mRNA_C-linearis_contig9.16698.1|Name=mRNA_C-linearis_contig9.16698.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=377bp|location=Sequence derived from alignment at C-linearis_contig9:3079967..3080343+ (Chordaria linearis ClinC8C monoicous)
GGAGTCCATGTTTTTGTAGTCGCTAAACGCTCTTTGGGGGGAGGGGAGGG
AGGTGCCGACCTCTCGCCTCTCTTGCCACAAAAACTAGAGGTCAAACAGT
CCCCCCGTTCGTCGTCCTTTCGTGAACCAACTTTCAGGCACCACTTGGAA
GTATATGCATCCCGCGTCGTCTTGTTCGCATGTGCAGCTTCTGGTTGCGT
CGGTGCTGCTGCCGGTGTGACTACAGAGCTTGTGCCTGCGCTGGCACCAC
GCTACAAATTGGCTTGCAGGAGCATGTTCCGCTCAATTCTTGGCCGGCTT
GCAAACCTCAACAAACGTGGAGGGAAATTATGATGAAATCGCTATTCTGC
CGTGGTTAAGGCGGCAAAAAAGGGGAG
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Coding sequence (CDS) from alignment at C-linearis_contig9:3079967..3080343+

>mRNA_C-linearis_contig9.16698.1 ID=mRNA_C-linearis_contig9.16698.1|Name=mRNA_C-linearis_contig9.16698.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at C-linearis_contig9:3079967..3080343+ (Chordaria linearis ClinC8C monoicous)
GGAGTCCATGTTTTTGTAGTCGCTAAACGCTCTTTGGGGGGAGGGGAGGG
AGGTGCCGACCTCTCGCCTCTCTTGCCACAAAAACTAGAGGTCAAACAGT
CCCCCCGTTCGTCGTCCTTTCGTGAACCAACTTTCAGGCACCACTTGGAA
GTATATGCATCCCGCGTCGTCTTGTTCGCATGTGCAGCTTCTGGTTGCGT
CGGTGCTGCTGCCGGTGTGACTACAGAGCTTGTGCCTGCGCTGGCACCAC
GCTACAAATTGGCTTGCAGGAGCATGTTCCGCTCAATTCTTGGCCGGCTT
GCAAACCTCAACAAACGTGGAGGGAAATTATGAGGAGTCCATGTTTTTGT
AGTCGCTAAACGCTCTTTGGGGGGAGGGGAGGGAGGTGCCGACCTCTCGC
CTCTCTTGCCACAAAAACTAGAGGTCAAACAGTCCCCCCGTTCGTCGTCC
TTTCGTGAACCAACTTTCAGGCACCACTTGGAAGTATATGCATCCCGCGT
CGTCTTGTTCGCATGTGCAGCTTCTGGTTGCGTCGGTGCTGCTGCCGGTG
TGACTACAGAGCTTGTGCCTGCGCTGGCACCACGCTACAAATTGGCTTGC
AGGAGCATGTTCCGCTCAATTCTTGGCCGGCTTGCAAACCTCAACAAACG
TGGAGGGAAATTATGA
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