mRNA_C-linearis_contig9.16689.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16689.1
Unique NamemRNA_C-linearis_contig9.16689.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3010243..3010490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size225
Cds size129
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16689.1prot_C-linearis_contig9.16689.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 3010306..3010457 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930703.724717-UTR-C-linearis_contig9:3010242..30103051622930703.724717-UTR-C-linearis_contig9:3010242..3010305Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3010243..3010305 +
1690881205.8297997-UTR-C-linearis_contig9:3010242..30103051690881205.8297997-UTR-C-linearis_contig9:3010242..3010305Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3010243..3010305 +
1622930703.7940547-UTR-C-linearis_contig9:3010457..30104901622930703.7940547-UTR-C-linearis_contig9:3010457..3010490Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3010458..3010490 +
1690881205.872125-UTR-C-linearis_contig9:3010457..30104901690881205.872125-UTR-C-linearis_contig9:3010457..3010490Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3010458..3010490 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930703.7391176-CDS-C-linearis_contig9:3010305..30103481622930703.7391176-CDS-C-linearis_contig9:3010305..3010348Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3010306..3010348 +
1690881205.8407586-CDS-C-linearis_contig9:3010305..30103481690881205.8407586-CDS-C-linearis_contig9:3010305..3010348Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3010306..3010348 +
1622930703.7541108-CDS-C-linearis_contig9:3010359..30103791622930703.7541108-CDS-C-linearis_contig9:3010359..3010379Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3010360..3010379 +
1690881205.85083-CDS-C-linearis_contig9:3010359..30103791690881205.85083-CDS-C-linearis_contig9:3010359..3010379Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3010360..3010379 +
1622930703.777003-CDS-C-linearis_contig9:3010391..30104571622930703.777003-CDS-C-linearis_contig9:3010391..3010457Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3010392..3010457 +
1690881205.8622274-CDS-C-linearis_contig9:3010391..30104571690881205.8622274-CDS-C-linearis_contig9:3010391..3010457Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3010392..3010457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16689.1

>prot_C-linearis_contig9.16689.1 ID=prot_C-linearis_contig9.16689.1|Name=mRNA_C-linearis_contig9.16689.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=43bp
MMTQKQKELSPKQIVCLPKMRQNTADERPLRQLQPNAFQVTQ*
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mRNA from alignment at C-linearis_contig9:3010243..3010490+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16689.1 ID=mRNA_C-linearis_contig9.16689.1|Name=mRNA_C-linearis_contig9.16689.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=248bp|location=Sequence derived from alignment at C-linearis_contig9:3010243..3010490+ (Chordaria linearis ClinC8C monoicous)
CCGGGCGAAAAGGAAGCGAGGCGGCAAAACGTGCAGCAAGTTGCCGACCG
AAAGCATCCATAAATGATGACCCAAAAACAGAAGGAGTTGTCGCCAAAAC
AAATAGTCCACCCGTGTTGTGTCTCCCAAAAATGCGGGCGGCATGTGAGC
AAAATACCGCTGACGAGCGACCCCTACGCCAGCTACAACCGAACGCGTTC
CAGGTGACACAGTAGGCCTCTGAGGCGCATCCATGAGGGCAGGCAGAA
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Coding sequence (CDS) from alignment at C-linearis_contig9:3010243..3010490+

>mRNA_C-linearis_contig9.16689.1 ID=mRNA_C-linearis_contig9.16689.1|Name=mRNA_C-linearis_contig9.16689.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at C-linearis_contig9:3010243..3010490+ (Chordaria linearis ClinC8C monoicous)
ATGATGACCCAAAAACAGAAGGAGTTGTCGCCAAAACAAATAGATGATGA
CCCAAAAACAGAAGGAGTTGTCGCCAAAACAAATAGTGTGTCTCCCAAAA
ATGCGGTGTGTCTCCCAAAAATGCGGCAAAATACCGCTGACGAGCGACCC
CTACGCCAGCTACAACCGAACGCGTTCCAGGTGACACAGTAGCAAAATAC
CGCTGACGAGCGACCCCTACGCCAGCTACAACCGAACGCGTTCCAGGTGA
CACAGTAG
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