mRNA_C-linearis_contig9.16687.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16687.1
Unique NamemRNA_C-linearis_contig9.16687.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:2974945..2975388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size444
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16687.1prot_C-linearis_contig9.16687.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 2975020..2975340 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930706.8577344-UTR-C-linearis_contig9:2974944..29750191622930706.8577344-UTR-C-linearis_contig9:2974944..2975019Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2974945..2975019 +
1690881207.1863127-UTR-C-linearis_contig9:2974944..29750191690881207.1863127-UTR-C-linearis_contig9:2974944..2975019Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2974945..2975019 +
1622930706.8890355-UTR-C-linearis_contig9:2975340..29753881622930706.8890355-UTR-C-linearis_contig9:2975340..2975388Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2975341..2975388 +
1690881207.2160816-UTR-C-linearis_contig9:2975340..29753881690881207.2160816-UTR-C-linearis_contig9:2975340..2975388Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2975341..2975388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930706.8733888-CDS-C-linearis_contig9:2975019..29753401622930706.8733888-CDS-C-linearis_contig9:2975019..2975340Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2975020..2975340 +
1690881207.201611-CDS-C-linearis_contig9:2975019..29753401690881207.201611-CDS-C-linearis_contig9:2975019..2975340Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2975020..2975340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16687.1

>prot_C-linearis_contig9.16687.1 ID=prot_C-linearis_contig9.16687.1|Name=mRNA_C-linearis_contig9.16687.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=107bp
MAQKVKATDRLNTKHARLFVSGLYKFPVLWHRHKVVHPVFGGSHMKCGTG
ISKPLLPLWGHSGTPRCHHRPTRNTSATLCITRKQIRPSTIITKIRLASR
SAKRCA*
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mRNA from alignment at C-linearis_contig9:2974945..2975388+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16687.1 ID=mRNA_C-linearis_contig9.16687.1|Name=mRNA_C-linearis_contig9.16687.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=444bp|location=Sequence derived from alignment at C-linearis_contig9:2974945..2975388+ (Chordaria linearis ClinC8C monoicous)
CGCGACGTTCGGGGCATAGCACACACCCTCAAGCTTCAGTACCGTGTTGG
TCACACTACCATCAGGATAGGTTCGATGGCACAGAAGGTCAAGGCAACCG
ATCGCCTCAATACGAAGCATGCTCGACTCTTTGTTTCCGGTCTCTACAAA
TTCCCTGTCCTTTGGCACAGGCACAAGGTCGTACATCCTGTCTTTGGTGG
GAGTCATATGAAATGTGGCACAGGAATCAGCAAACCACTCTTGCCACTCT
GGGGCCATAGCGGCACCCCTCGCTGCCATCACAGACCCACACGCAACACC
AGTGCTACCCTCTGCATCACGCGAAAGCAAATCCGGCCGTCTACCATCAT
CACTAAAATTCGACTTGCCTCGAGGAGCGCTAAGCGCTGTGCATAGGTGC
AAAGGAGGCCCCGATGCGGACGCTCCAGGGGAGGGAGAGGACGA
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Coding sequence (CDS) from alignment at C-linearis_contig9:2974945..2975388+

>mRNA_C-linearis_contig9.16687.1 ID=mRNA_C-linearis_contig9.16687.1|Name=mRNA_C-linearis_contig9.16687.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at C-linearis_contig9:2974945..2975388+ (Chordaria linearis ClinC8C monoicous)
ATGGCACAGAAGGTCAAGGCAACCGATCGCCTCAATACGAAGCATGCTCG
ACTCTTTGTTTCCGGTCTCTACAAATTCCCTGTCCTTTGGCACAGGCACA
AGGTCGTACATCCTGTCTTTGGTGGGAGTCATATGAAATGTGGCACAGGA
ATCAGCAAACCACTCTTGCCACTCTGGGGCCATAGCGGCACCCCTCGCTG
CCATCACAGACCCACACGCAACACCAGTGCTACCCTCTGCATCACGCGAA
AGCAAATCCGGCCGTCTACCATCATCACTAAAATTCGACTTGCCTCGAGG
AGCGCTAAGCGCTGTGCATAGATGGCACAGAAGGTCAAGGCAACCGATCG
CCTCAATACGAAGCATGCTCGACTCTTTGTTTCCGGTCTCTACAAATTCC
CTGTCCTTTGGCACAGGCACAAGGTCGTACATCCTGTCTTTGGTGGGAGT
CATATGAAATGTGGCACAGGAATCAGCAAACCACTCTTGCCACTCTGGGG
CCATAGCGGCACCCCTCGCTGCCATCACAGACCCACACGCAACACCAGTG
CTACCCTCTGCATCACGCGAAAGCAAATCCGGCCGTCTACCATCATCACT
AAAATTCGACTTGCCTCGAGGAGCGCTAAGCGCTGTGCATAG
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