mRNA_C-linearis_contig9.16685.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16685.1
Unique NamemRNA_C-linearis_contig9.16685.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:2953750..2954413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size300
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930703.6654398-CDS-C-linearis_contig9:2953749..29539531622930703.6654398-CDS-C-linearis_contig9:2953749..2953953Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2953750..2953953 -
1690881205.806879-CDS-C-linearis_contig9:2953749..29539531690881205.806879-CDS-C-linearis_contig9:2953749..2953953Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2953750..2953953 -
1622930703.6815493-CDS-C-linearis_contig9:2954317..29544131622930703.6815493-CDS-C-linearis_contig9:2954317..2954413Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2954318..2954413 -
1690881205.817816-CDS-C-linearis_contig9:2954317..29544131690881205.817816-CDS-C-linearis_contig9:2954317..2954413Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2954318..2954413 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16685.1prot_C-linearis_contig9.16685.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 2953750..2954413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16685.1

>prot_C-linearis_contig9.16685.1 ID=prot_C-linearis_contig9.16685.1|Name=mRNA_C-linearis_contig9.16685.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=100bp
MSSIGFEEQDEEDEMESDCECLGDMVEELGTQSSTAEIREQSAARIRGNP
DDIIRDVVAAVGAVFEEYHHHLLRFGVRFGTRRSSRDPCAILFSSSGSF*
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mRNA from alignment at C-linearis_contig9:2953750..2954413-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16685.1 ID=mRNA_C-linearis_contig9.16685.1|Name=mRNA_C-linearis_contig9.16685.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=664bp|location=Sequence derived from alignment at C-linearis_contig9:2953750..2954413- (Chordaria linearis ClinC8C monoicous)
ATGTCTTCTATAGGATTCGAAGAACAAGACGAGGAAGATGAGATGGAGAG
CGACTGCGAGTGTCTAGGGGACATGGTGGAGGAACTTGGAACTCAGGTGA
CAGACGGTCAAGAGGGAGAGAAGGTGGCGCCGGTGTACCTAGTATAAGGA
TGCATGTGCCTGCGATCTGTCGCCATCTTGCGTACTACTACTACAAGTGG
TAGCTGAGGCGCGTTGTTCACGCACAACCAAGCCTTGAATTGCGATCAAC
GTTTGCCCAATAACATAGTTCTAGGGTGCATCGTGGTTGTTCGCTATTCT
TCTAGACGTGGACACGACCTCGTTGGAGGGTTACTGCTGTTGTTGGTGCT
ATTTACAACACCTAATGTCTGATCTGCTCGCAGGGTCCTCCGTGCACGTA
CTCATCATCAACGTTGAATCGTGTCGGTGGCTTGTTTTGGATGTTTCTGC
GAAACTCCAGTCGTCAACAGCAGAAATCCGGGAACAAAGCGCTGCGAGAA
TTAGGGGCAACCCGGACGACATAATCAGAGACGTGGTGGCGGCTGTTGGC
GCTGTTTTCGAAGAGTACCACCATCATCTACTCCGCTTTGGTGTGCGCTT
TGGGACAAGGCGAAGCAGCAGGGACCCTTGCGCAATTTTATTCTCGAGCA
GTGGGAGTTTCTGA
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Coding sequence (CDS) from alignment at C-linearis_contig9:2953750..2954413-

>mRNA_C-linearis_contig9.16685.1 ID=mRNA_C-linearis_contig9.16685.1|Name=mRNA_C-linearis_contig9.16685.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at C-linearis_contig9:2953750..2954413- (Chordaria linearis ClinC8C monoicous)
ATGTCTTCTATAGGATTCGAAGAACAAGACGAGGAAGATGAGATGGAGAG
CGACTGCGAGTGTCTAGGGGACATGGTGGAGGAACTTGGAACTCAGATGT
CTTCTATAGGATTCGAAGAACAAGACGAGGAAGATGAGATGGAGAGCGAC
TGCGAGTGTCTAGGGGACATGGTGGAGGAACTTGGAACTCAGTCGTCAAC
AGCAGAAATCCGGGAACAAAGCGCTGCGAGAATTAGGGGCAACCCGGACG
ACATAATCAGAGACGTGGTGGCGGCTGTTGGCGCTGTTTTCGAAGAGTAC
CACCATCATCTACTCCGCTTTGGTGTGCGCTTTGGGACAAGGCGAAGCAG
CAGGGACCCTTGCGCAATTTTATTCTCGAGCAGTGGGAGTTTCTGATCGT
CAACAGCAGAAATCCGGGAACAAAGCGCTGCGAGAATTAGGGGCAACCCG
GACGACATAATCAGAGACGTGGTGGCGGCTGTTGGCGCTGTTTTCGAAGA
GTACCACCATCATCTACTCCGCTTTGGTGTGCGCTTTGGGACAAGGCGAA
GCAGCAGGGACCCTTGCGCAATTTTATTCTCGAGCAGTGGGAGTTTCTGA
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