mRNA_C-linearis_contig9.16681.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16681.1
Unique NamemRNA_C-linearis_contig9.16681.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:2806951..2807560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size610
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16681.1prot_C-linearis_contig9.16681.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 2806967..2807503 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930706.782415-UTR-C-linearis_contig9:2806950..28069661622930706.782415-UTR-C-linearis_contig9:2806950..2806966Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2806951..2806966 +
1690881207.1465921-UTR-C-linearis_contig9:2806950..28069661690881207.1465921-UTR-C-linearis_contig9:2806950..2806966Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2806951..2806966 +
1622930706.812571-UTR-C-linearis_contig9:2807503..28075601622930706.812571-UTR-C-linearis_contig9:2807503..2807560Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2807504..2807560 +
1690881207.1719759-UTR-C-linearis_contig9:2807503..28075601690881207.1719759-UTR-C-linearis_contig9:2807503..2807560Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2807504..2807560 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930706.795779-CDS-C-linearis_contig9:2806966..28075031622930706.795779-CDS-C-linearis_contig9:2806966..2807503Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2806967..2807503 +
1690881207.1568463-CDS-C-linearis_contig9:2806966..28075031690881207.1568463-CDS-C-linearis_contig9:2806966..2807503Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2806967..2807503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16681.1

>prot_C-linearis_contig9.16681.1 ID=prot_C-linearis_contig9.16681.1|Name=mRNA_C-linearis_contig9.16681.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=179bp
MTIGEMIELHPDLEQVCDHQLPEGTGMEDDGCGVVDDAGAVDDAPEDEPR
AKRAKAKREGQNARAAARKLQNKVSKKPAGDVATVTKEAISSAMTTIMPT
INNLVQPNSSARDSLHESESASAKLHLSSDLRTSYTSLKVDLTAERIKPD
ADEWYVEHLEKKLQKVRAAMDKDADAEL*
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mRNA from alignment at C-linearis_contig9:2806951..2807560+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16681.1 ID=mRNA_C-linearis_contig9.16681.1|Name=mRNA_C-linearis_contig9.16681.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=610bp|location=Sequence derived from alignment at C-linearis_contig9:2806951..2807560+ (Chordaria linearis ClinC8C monoicous)
AGATGACACGGACGTCATGACCATCGGAGAGATGATCGAGCTGCACCCCG
ATCTGGAGCAGGTCTGCGACCACCAGCTGCCCGAAGGTACCGGCATGGAG
GATGACGGCTGCGGCGTCGTCGACGACGCGGGCGCCGTCGACGACGCACC
TGAAGATGAGCCTAGGGCAAAGCGAGCCAAGGCCAAAAGAGAGGGCCAGA
ATGCCCGCGCCGCGGCGAGGAAGCTCCAAAACAAAGTCTCGAAGAAGCCT
GCTGGCGATGTCGCAACGGTAACTAAAGAAGCGATTTCTAGCGCGATGAC
GACTATCATGCCCACAATCAACAACTTGGTGCAGCCGAATTCATCTGCCC
GCGACAGCCTTCATGAATCCGAGAGCGCTTCCGCGAAGCTACATCTGTCA
TCGGATCTGCGCACCAGCTACACCTCGCTGAAGGTGGACCTGACCGCGGA
GAGAATCAAGCCGGACGCCGATGAGTGGTACGTGGAGCACCTCGAGAAGA
AGCTGCAAAAAGTGCGCGCGGCCATGGATAAGGATGCGGACGCGGAGCTG
TGATCGCGGCGGCGGGGGGCGACGGTGGCGTGCATGGAGAAGGATGCGCG
CGCGGAGCTG
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Coding sequence (CDS) from alignment at C-linearis_contig9:2806951..2807560+

>mRNA_C-linearis_contig9.16681.1 ID=mRNA_C-linearis_contig9.16681.1|Name=mRNA_C-linearis_contig9.16681.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at C-linearis_contig9:2806951..2807560+ (Chordaria linearis ClinC8C monoicous)
ATGACCATCGGAGAGATGATCGAGCTGCACCCCGATCTGGAGCAGGTCTG
CGACCACCAGCTGCCCGAAGGTACCGGCATGGAGGATGACGGCTGCGGCG
TCGTCGACGACGCGGGCGCCGTCGACGACGCACCTGAAGATGAGCCTAGG
GCAAAGCGAGCCAAGGCCAAAAGAGAGGGCCAGAATGCCCGCGCCGCGGC
GAGGAAGCTCCAAAACAAAGTCTCGAAGAAGCCTGCTGGCGATGTCGCAA
CGGTAACTAAAGAAGCGATTTCTAGCGCGATGACGACTATCATGCCCACA
ATCAACAACTTGGTGCAGCCGAATTCATCTGCCCGCGACAGCCTTCATGA
ATCCGAGAGCGCTTCCGCGAAGCTACATCTGTCATCGGATCTGCGCACCA
GCTACACCTCGCTGAAGGTGGACCTGACCGCGGAGAGAATCAAGCCGGAC
GCCGATGAGTGGTACGTGGAGCACCTCGAGAAGAAGCTGCAAAAAGTGCG
CGCGGCCATGGATAAGGATGCGGACGCGGAGCTGTGAATGACCATCGGAG
AGATGATCGAGCTGCACCCCGATCTGGAGCAGGTCTGCGACCACCAGCTG
CCCGAAGGTACCGGCATGGAGGATGACGGCTGCGGCGTCGTCGACGACGC
GGGCGCCGTCGACGACGCACCTGAAGATGAGCCTAGGGCAAAGCGAGCCA
AGGCCAAAAGAGAGGGCCAGAATGCCCGCGCCGCGGCGAGGAAGCTCCAA
AACAAAGTCTCGAAGAAGCCTGCTGGCGATGTCGCAACGGTAACTAAAGA
AGCGATTTCTAGCGCGATGACGACTATCATGCCCACAATCAACAACTTGG
TGCAGCCGAATTCATCTGCCCGCGACAGCCTTCATGAATCCGAGAGCGCT
TCCGCGAAGCTACATCTGTCATCGGATCTGCGCACCAGCTACACCTCGCT
GAAGGTGGACCTGACCGCGGAGAGAATCAAGCCGGACGCCGATGAGTGGT
ACGTGGAGCACCTCGAGAAGAAGCTGCAAAAAGTGCGCGCGGCCATGGAT
AAGGATGCGGACGCGGAGCTGTGA
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