mRNA_C-linearis_contig9.16660.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16660.1
Unique NamemRNA_C-linearis_contig9.16660.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:2495621..2496455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size243
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16660.1prot_C-linearis_contig9.16660.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 2495621..2496452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930703.4048836-CDS-C-linearis_contig9:2495620..24958091622930703.4048836-CDS-C-linearis_contig9:2495620..2495809Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2495621..2495809 +
1690881205.697021-CDS-C-linearis_contig9:2495620..24958091690881205.697021-CDS-C-linearis_contig9:2495620..2495809Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2495621..2495809 +
1622930703.421023-CDS-C-linearis_contig9:2496398..24964521622930703.421023-CDS-C-linearis_contig9:2496398..2496452Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2496399..2496452 +
1690881205.7145674-CDS-C-linearis_contig9:2496398..24964521690881205.7145674-CDS-C-linearis_contig9:2496398..2496452Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2496399..2496452 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930703.4441946-UTR-C-linearis_contig9:2496452..24964551622930703.4441946-UTR-C-linearis_contig9:2496452..2496455Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2496453..2496455 +
1690881205.728869-UTR-C-linearis_contig9:2496452..24964551690881205.728869-UTR-C-linearis_contig9:2496452..2496455Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2496453..2496455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16660.1

>prot_C-linearis_contig9.16660.1 ID=prot_C-linearis_contig9.16660.1|Name=mRNA_C-linearis_contig9.16660.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=81bp
QESSTGCLALKERREPSTGRIFQSGVLRCFTYSQEENGGDGGHAPCAGTG
TCVSRPVVAVASQVRPPGAMKEGGLVYACL*
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mRNA from alignment at C-linearis_contig9:2495621..2496455+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16660.1 ID=mRNA_C-linearis_contig9.16660.1|Name=mRNA_C-linearis_contig9.16660.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=835bp|location=Sequence derived from alignment at C-linearis_contig9:2495621..2496455+ (Chordaria linearis ClinC8C monoicous)
CAAGAATCCTCGACCGGCTGCTTAGCGCTGAAGGAGAGGAGAGAGCCAAG
TACTGGGCGAATTTTTCAGTCGGGGGTGCTCCGATGCTTCACTTATAGCC
AAGAGGAGAACGGTGGAGATGGCGGCCATGCGCCGTGCGCTGGGACAGGG
ACCTGCGTTTCGCGCCCGGTCGTGGCAGTGGCCAGCCAGGTCTGCGTCGT
TGTGTGTTAATGGTGATGAATCTGCTGGGATTCCGTCGAGTGGGGCATGC
CTTGCTATGGCCCCGTTACACGTGTGTATTACCGACCAAATGTCCCAAGG
CGCTTCACCAGGTTGATTCACGGGTGGGATCAAGCCCTGGTGATCTGTAC
TCATACAAATCGTGGCCAGGAAAGTGCCTAGTTAGTGCCTTCGCCGATCT
AGCTAACGAGTTCGTACCGGCGCGTTCAAAATCCATCCAGGCGTGCGAGA
CCACCAAGGCACACATCCTCTCTGGAAATTGGAAACGGACTAGTCTATGT
GGACTTTTTTTGTGTGGAGAGTGGTGGCTCACCTTTCGTGCTTGTCCAGC
ATTGCTGTTAACTCGAATTTGTGCCCCTAGCCCCTCTGCCCCCGGACATT
CGGCTGGTATGCGGTCGAAGTTGCGGTTGTTTGTTGGTTCTTCCACCGGG
AGCGATCGTGCGAGAAGTGACCGTATGTGTCCTCCACCGGTGCTCATCAA
GACGGGACATATCTCTCTATGTAAACACGCGTTGCTGTTCCTGTTCCTCT
CTCTCTTGCCTGTTTGACCCACTCCCAGGTACGTCCTCCGGGTGCAATGA
AAGAAGGAGGGCTTGTATATGCCTGCCTGTAGGGG
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Coding sequence (CDS) from alignment at C-linearis_contig9:2495621..2496455+

>mRNA_C-linearis_contig9.16660.1 ID=mRNA_C-linearis_contig9.16660.1|Name=mRNA_C-linearis_contig9.16660.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at C-linearis_contig9:2495621..2496455+ (Chordaria linearis ClinC8C monoicous)
CAAGAATCCTCGACCGGCTGCTTAGCGCTGAAGGAGAGGAGAGAGCCAAG
TACTGGGCGAATTTTTCAGTCGGGGGTGCTCCGATGCTTCACTTATAGCC
AAGAGGAGAACGGTGGAGATGGCGGCCATGCGCCGTGCGCTGGGACAGGG
ACCTGCGTTTCGCGCCCGGTCGTGGCAGTGGCCAGCCAGCAAGAATCCTC
GACCGGCTGCTTAGCGCTGAAGGAGAGGAGAGAGCCAAGTACTGGGCGAA
TTTTTCAGTCGGGGGTGCTCCGATGCTTCACTTATAGCCAAGAGGAGAAC
GGTGGAGATGGCGGCCATGCGCCGTGCGCTGGGACAGGGACCTGCGTTTC
GCGCCCGGTCGTGGCAGTGGCCAGCCAGGTACGTCCTCCGGGTGCAATGA
AAGAAGGAGGGCTTGTATATGCCTGCCTGTAGGTACGTCCTCCGGGTGCA
ATGAAAGAAGGAGGGCTTGTATATGCCTGCCTGTAG
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