mRNA_C-linearis_contig9.16650.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16650.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI) HSP 1 Score: 136 bits (342), Expect = 3.170e-34 Identity = 76/116 (65.52%), Postives = 85/116 (73.28%), Query Frame = 3
Query: 153 KKAAISKSMVDRLADDLLEGKGFGAVAKSLAKAYQEG--TSVRS-VGL----VGQH------ADPGVVPKFSSIGDPSGYNSSPPSAHYLGDIWNTWFYETPVVQDGGCSWTREEY 461
KKAAISKS+VDRLADDLLEG GF A +KSLA Y +RS V L V +H D G++PKFSSIGDPSG++SSPPSAHYLGDIW+ FYETPVVQ GCSWTREEY
Sbjct: 135 KKAAISKSVVDRLADDLLEGTGFAAASKSLANTYHARYFNQLRSYVSLANRCVSRHKGMWPNVDLGMIPKFSSIGDPSGFHSSPPSAHYLGDIWHKGFYETPVVQADGCSWTREEY 250
BLAST of mRNA_C-linearis_contig9.16650.1 vs. uniprot
Match: A0A6H5KSM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM2_9PHAE) HSP 1 Score: 103 bits (256), Expect = 5.130e-23 Identity = 53/107 (49.53%), Postives = 68/107 (63.55%), Query Frame = 3
Query: 153 KKAAISKSMVDRLADDLLEGKGFGAVAKSLAKAY----------------QEGTSVRSVGLVGQHADPGVVPKFSSIGDPSGYNSSPPSAHYLGDIWNTWFYETPVV 425
+KAAIS+S++DRLADDLLEGKGF A +KSL AY + + ++ +GL+G AD G +PKF + D G+NS PSAHYLGDIW+ WF E PV
Sbjct: 161 RKAAISRSLIDRLADDLLEGKGFAATSKSLQNAYTATYFKLYRSYVSLANRRVSQLKGLGLLGPDADVGKIPKFEEMADALGFNSRHPSAHYLGDIWHKWFDEMPVT 267
BLAST of mRNA_C-linearis_contig9.16650.1 vs. uniprot
Match: A0A6H5K4D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D4_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 2.320e-18 Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 1
Query: 1 LGRRYECKKCTDDNKQ-RSEDERTTQTFNAWDPGVLARMDDFVSKEFPFVLTKK 159
+G RYECK+CT NK+ RSEDERTTQTFNAWDP VLARMDDFVS++FPFVLTKK
Sbjct: 233 IGFRYECKECTRANKEDRSEDERTTQTFNAWDPAVLARMDDFVSEQFPFVLTKK 286
BLAST of mRNA_C-linearis_contig9.16650.1 vs. uniprot
Match: A0A6H5JE51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE51_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 3.470e-17 Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 1
Query: 1 LGRRYECKKCTDDNKQRSEDERTTQTFNAWDPGVLARMDDFVSKEFPFVLTKKRPSVRA 177
+G RY CK+CTD N ++ ++RTT TFNAWDP VL RM+DFVSKEFPFVLT+K + R+
Sbjct: 45 IGYRYYCKRCTDANAMKNNEDRTTVTFNAWDPDVLGRMNDFVSKEFPFVLTRKGATSRS 103
BLAST of mRNA_C-linearis_contig9.16650.1 vs. uniprot
Match: A0A6H5KE68_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE68_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 1.030e-13 Identity = 44/113 (38.94%), Postives = 56/113 (49.56%), Query Frame = 3
Query: 156 KAAISKSMVDRLADDLLEGKGFGAVAKSLAKA-----------YQEGTSVRSVGLVGQHADPGVVPKFSSIGDPSGYNSSPPSAHYLGDIWNTWFYETPVVQDGGCSWTREEY 461
++ I +VDRLADDL+ GKGF A AK + +A Y R V V KF S D Y + PS HYL D+W T+F E PV++ G WTRE+Y
Sbjct: 69 RSGIDIRLVDRLADDLVHGKGFSAAAKYIRQAHTTKFMAFQLKYVSLADARRSSRVSLFGAAPVPVKFGSFDDTEKYCGAVPSDHYLRDVWRTYFSELPVLEVKGVKWTREDY 181
BLAST of mRNA_C-linearis_contig9.16650.1 vs. uniprot
Match: D7FVB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB4_ECTSI) HSP 1 Score: 72.8 bits (177), Expect = 1.130e-12 Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 3
Query: 177 MVDRLADDLLEGKGFGAVAKSLAKAYQEGTSV------------RSVGLVGQHADPGVVP-KFSSIGDPSGYNSSPPSAHYLGDIWNTWFYETPVVQDGGCSWTREEY 461
MVDRLADDL+ GKGF A AK++ +A+ V R+ + + A+ P +F S D + Y + PS HYL D+W +F + PV++ G SWT EEY
Sbjct: 1 MVDRLADDLVHGKGFSAAAKNICQAHTTKFMVDQLKYTSLVNSRRTSSGIFRSANLAKTPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFSKLPVLEVDGVSWTLEEY 108
BLAST of mRNA_C-linearis_contig9.16650.1 vs. uniprot
Match: A0A6H5JPP4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP4_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 2.950e-12 Identity = 42/116 (36.21%), Postives = 62/116 (53.45%), Query Frame = 3
Query: 153 KKAAISKSMVDRLADDLLEGKGFGAVAKSLAKAYQEGTSV------------RSVGLVGQHADPGVVP-KFSSIGDPSGYNSSPPSAHYLGDIWNTWFYETPVVQDGGCSWTREEY 461
K++ I MVDRLADDL+ GKGF A AK++ +A+ V R+ + + A+ +P +F S D + Y + PS HYL D+W +F + PV++ WT EEY
Sbjct: 200 KRSGIEICMVDRLADDLVHGKGFSAAAKNICQAHTTKFMVDQLKYTSLVSTRRTSSGIFRSANLAKIPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFSKLPVLEMDSVDWTLEEY 315
BLAST of mRNA_C-linearis_contig9.16650.1 vs. uniprot
Match: A0A6H5KTU1_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTU1_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 3.460e-10 Identity = 41/116 (35.34%), Postives = 61/116 (52.59%), Query Frame = 3
Query: 153 KKAAISKSMVDRLADDLLEGKGFGAVAKSLAKAYQEGTSV------------RSVGLVGQHADPGVVP-KFSSIGDPSGYNSSPPSAHYLGDIWNTWFYETPVVQDGGCSWTREEY 461
K++ I MVDRLADDL+ GKGF A AK++ +A+ V R+ + + A+ +P +F S D + Y + PS HYL D+ +F + PV++ WT EEY
Sbjct: 60 KRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVSTRRTSSGIFRSANLAKIPERFGSFDDSTKYGGAVPSEHYLRDVRRLYFSKLPVLEVDSVDWTLEEY 175
BLAST of mRNA_C-linearis_contig9.16650.1 vs. uniprot
Match: A0A6H5L7G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G9_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 1.040e-9 Identity = 41/116 (35.34%), Postives = 60/116 (51.72%), Query Frame = 3
Query: 153 KKAAISKSMVDRLADDLLEGKGFGAVAKSLAKAYQEGTSV------------RSVGLVGQHADPGVVP-KFSSIGDPSGYNSSPPSAHYLGDIWNTWFYETPVVQDGGCSWTREEY 461
K++ I MVDRLADDL+ GKGF A AK++ +A+ V R+ + + A+ P +F S D + Y + PS HYL D+ +F + PV++ WT EEY
Sbjct: 200 KRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRTSSGIFRSANLAKTPERFGSFDDSTKYGGAVPSEHYLRDVRRFYFSKLPVLEVDSVDWTLEEY 315
BLAST of mRNA_C-linearis_contig9.16650.1 vs. uniprot
Match: A0A6H5JZ22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ22_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 1.460e-9 Identity = 39/108 (36.11%), Postives = 57/108 (52.78%), Query Frame = 3
Query: 177 MVDRLADDLLEGKGFGAVAKSLAKAYQEGTSV------------RSVGLVGQHADPGVVP-KFSSIGDPSGYNSSPPSAHYLGDIWNTWFYETPVVQDGGCSWTREEY 461
MVDRLADDL+ GKGF A AK++ +A+ V R+ + + A+ P +F S D + Y+ + PS HYL D+ +F + PV++ WT EEY
Sbjct: 1 MVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRTSSGIFRSANLAKTPERFGSFDDSTEYSGAVPSEHYLRDVRRLYFSKPPVLEVESVDWTLEEY 108 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16650.1 >prot_C-linearis_contig9.16650.1 ID=prot_C-linearis_contig9.16650.1|Name=mRNA_C-linearis_contig9.16650.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=95bp MVDRLADDLLEGKGFGAVAKSLAKAYQEGTSVRSVGLVGQHADPGVVPKFback to top mRNA from alignment at C-linearis_contig9:2360518..2361196- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16650.1 ID=mRNA_C-linearis_contig9.16650.1|Name=mRNA_C-linearis_contig9.16650.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=679bp|location=Sequence derived from alignment at C-linearis_contig9:2360518..2361196- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:2360518..2361196- >mRNA_C-linearis_contig9.16650.1 ID=mRNA_C-linearis_contig9.16650.1|Name=mRNA_C-linearis_contig9.16650.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at C-linearis_contig9:2360518..2361196- (Chordaria linearis ClinC8C monoicous)back to top |