mRNA_C-linearis_contig9.16648.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16648.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE) HSP 1 Score: 226 bits (576), Expect = 1.200e-70 Identity = 115/159 (72.33%), Postives = 125/159 (78.62%), Query Frame = 2
Query: 2 SGSVLDMCGGPGDAVARVLGATCDVVTNDVSSRLSPGSRQAPDTHLDASATTFRADFLADGGQ----RVVTSPPYKGAMKFVKAALSVAKKCVALKLSLSFLEPCADRGEWLSANPPALCVFLRRGRYTPAPVNVGEFWGVWYSTGADTTTAGGSKLVF 466
SG VLDMCGGP DAVAR L TC+VVTNDVSSRLS +R+APDT LDAS +TF A+FLADG Q RVV SPPYKGA+KFVKAAL VAK VALK SLSFLEPC DR +WL ANPP +CVFLRR YTP V +GEFWGVWY TG D T GG+KLVF
Sbjct: 136 SGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFLRRASYTPEHVMMGEFWGVWYCTGGDRTAVGGTKLVF 294
BLAST of mRNA_C-linearis_contig9.16648.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE) HSP 1 Score: 189 bits (479), Expect = 6.120e-56 Identity = 103/161 (63.98%), Postives = 122/161 (75.78%), Query Frame = 2
Query: 2 SGSVLDMCGGPGDAVARVLGATCDVVTNDVSSRLSPGSRQAPDTHLDASATTFRADFL-ADGGQR---VVTSPPYKGAMKFVKAALSVAKKCVALKLSLSFLEPCADRGEWLSANPPALCVFLRRGRYTPAP-VNVGEFWGVWYSTGADTTTAGGSKLVFC 469
+G VLDMCGGP DAVA+ +TC+V+TNDVSSRLS G T+LDAS +FR +F A+ G++ VVTSPPYKGA+ FVKAAL+VA K VALKL LSFLEPCADRG WL NPPA+C+FLRR +YT A V VGEFWGVWY+ G +GGS+LVFC
Sbjct: 146 AGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAG------TNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLRRAKYTHAHHVKVGEFWGVWYTDGGCCGKSGGSRLVFC 300
BLAST of mRNA_C-linearis_contig9.16648.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE) HSP 1 Score: 177 bits (450), Expect = 1.660e-52 Identity = 96/147 (65.31%), Postives = 107/147 (72.79%), Query Frame = 2
Query: 2 SGSVLDMCGGPGDAVARVLGATCDVVTNDVSSRLSPGSRQAPDTHLDASATTFRADFLA-DGGQR---VVTSPPYKGAMKFVKAALSVAKKCVALKLSLSFLEPCADRGEWLSANPPALCVFLRRGRYTPAPVNVGEFWGVWYSTGA 430
SG VLDMCGG DAVA L TC V+TNDV RLSP T+LDAS+ +F DFLA GQ+ +VTSPPYKGA+ FVKAAL+VAKK VALKL LSFLEPCADR WL ANPPALC+ + R RY PA V VGEFWGVWY G+
Sbjct: 88 SGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPA------TNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVRVGEFWGVWYPPGS 228
BLAST of mRNA_C-linearis_contig9.16648.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI) HSP 1 Score: 163 bits (412), Expect = 7.270e-47 Identity = 86/122 (70.49%), Postives = 98/122 (80.33%), Query Frame = 2
Query: 5 GSVLDMCGGPGDAVARVLGATCDVVTNDVSSRLSPGSRQAPDTHLDASATTFRADFL-ADGGQR---VVTSPPYKGAMKFVKAALSVAKKCVALKLSLSFLEPCADRGEWLSANPPALCVFL 358
G VLDMCGGPGDA+A LGATC VVTND+S+RLSPG PDT+LDAS +F DFL A GQR V+TSPPYKGA+++VK+ALS+A K VALKL LSFLEPCADRG WL ANPPA+CVF
Sbjct: 101 GCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLP-PDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221
BLAST of mRNA_C-linearis_contig9.16648.1 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE) HSP 1 Score: 154 bits (390), Expect = 1.050e-44 Identity = 87/152 (57.24%), Postives = 99/152 (65.13%), Query Frame = 2
Query: 20 MCGGPGDAVARVLGATCDVVTNDVSSRLSPGSR-QAPDTHLDASATTFRADFLADGGQRVVTSPPYKGAMKFVKAALSVAKKCVALKLSLSFLEPCADRGEWLSANPPALCVFLRRGRYTPAP-VNVGEFWGVWYSTGADTTTAGGSKLVFC 469
MCGGP DAVA G TC+V+TNDVSSRLSP + PD VVTSPPYKGA+ FVKA L+VA K VAL+L LSF +PCADRG WL NPP +C FLRR +YT A V VGEFWGVWY+ G +GGS+LVFC
Sbjct: 1 MCGGPEDAVALGFGGTCEVLTNDVSSRLSPAHPGKQPDW--------------------VVTSPPYKGAVGFVKAVLAVAAKGVALRLPLSFRKPCADRGSWLVDNPPVMCGFLRRAKYTHAHHVKVGEFWGVWYTDGG-CGKSGGSRLVFC 131
BLAST of mRNA_C-linearis_contig9.16648.1 vs. uniprot
Match: D7G0Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI) HSP 1 Score: 155 bits (391), Expect = 5.880e-44 Identity = 86/161 (53.42%), Postives = 107/161 (66.46%), Query Frame = 2
Query: 2 SGSVLDMCGGPGDAVARVLGATCDVVTNDVSSRLSPGSRQAPDTHLDASATTFRADFLAD-GGQR---VVTSPPYKGAMKFVKAALSVAKKCVALKLSLSFLEPCADRGEWLSANPPALCVFLRRGRYTPAP-VNVGEFWGVWYSTGADTTTAGGSKLVFC 469
+G VLDMCGGP DAVA L +TC+++TNDVS S + DT+LDAS +F DFLA G+R V TSPPY A+ FVKAA+S+A K V K+ + FLEPCAD G WL NPP+LCVFLRR +YT A EFWGVWY+ + + ++LVFC
Sbjct: 47 TGCVLDMCGGPTDAVATRLRSTCEILTNDVS------SGRPADTNLDASLESFPEDFLAAYSGKRPEWVATSPPYSRALTFVKAAMSLATKGVTFKMHIFFLEPCADWGGWLQTNPPSLCVFLRRAKYTRANNAKTSEFWGVWYTQ--EMSCRNRTRLVFC 199
BLAST of mRNA_C-linearis_contig9.16648.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI) HSP 1 Score: 151 bits (381), Expect = 3.940e-43 Identity = 84/155 (54.19%), Postives = 104/155 (67.10%), Query Frame = 2
Query: 20 MCGGPGDAVARVLGATCDVVTNDVSSRLSPGSRQAPDTHLDASATTFRADFLAD-GGQR---VVTSPPYKGAMKFVKAALSVAKKCVALKLSLSFLEPCADRGEWLSANPPALCVFLRRGRYTPAP-VNVGEFWGVWYSTGADTTTAGGSKLVFC 469
MCGGP DAVA L +TC+++TNDVS S + DT+L+AS F DFLA G+R VVTSPPY A+ FVKAA+S+A K VA K+ + FLEPCADRG WL NPP++CVFLRR +YT A GEFWGVWY + + ++LVFC
Sbjct: 1 MCGGPTDAVATRLRSTCEILTNDVS------SGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVWYPQ--EMSCRNRTRLVFC 147
BLAST of mRNA_C-linearis_contig9.16648.1 vs. uniprot
Match: A0A6H5JSV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV3_9PHAE) HSP 1 Score: 147 bits (372), Expect = 1.870e-41 Identity = 74/122 (60.66%), Postives = 89/122 (72.95%), Query Frame = 2
Query: 113 SRQAPDTHLDASATTFRADFLADGGQR----VVTSPPYKGAMKFVKAALSVAKKCVALKLSLSFLEPCADRGEWLSANPPALCVFLRRGRYTPAPVNVGEFWGVWYSTGADTTTAGGSKLVF 466
S +PDT+LDAS+ +F DFLA ++ VVT PPY GA+ FVKAAL VAKK VALKL LSFLEPCADR WL ANPPALC+ + R RY PA V VGEFWGVWY G+ +++ +KL+F
Sbjct: 49 SALSPDTNLDASSASFTDDFLAAHHEQQPDWVVTRPPYNGALAFVKAALPVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVRVGEFWGVWYPPGSGYSSSDSTKLLF 170
BLAST of mRNA_C-linearis_contig9.16648.1 vs. uniprot
Match: A0A6H5KAM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM1_9PHAE) HSP 1 Score: 145 bits (365), Expect = 6.100e-41 Identity = 72/119 (60.50%), Postives = 88/119 (73.95%), Query Frame = 2
Query: 122 APDTHLDASATTFRADFLA-DGGQR---VVTSPPYKGAMKFVKAALSVAKKCVALKLSLSFLEPCADRGEWLSANPPALCVFLRRGRYTPAPVNVGEFWGVWYSTGADTTTAGGSKLVF 466
+PDT+LDAS+T++ D+LA GQ+ VV SPPYKGA+ FVKAAL+VAK+ VALKL LSFLEPCADR WL NPP+LC+ + R RY PA V VGEFWGVWY G ++ +KL F
Sbjct: 11 SPDTNLDASSTSYADDYLAAHNGQQPDWVVASPPYKGALSFVKAALTVAKEGVALKLPLSFLEPCADRAGWLQENPPSLCMMMSRARYQPAHVRVGEFWGVWYPPGGGSSIGDSTKLSF 129
BLAST of mRNA_C-linearis_contig9.16648.1 vs. uniprot
Match: A0A6H5JT40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT40_9PHAE) HSP 1 Score: 144 bits (362), Expect = 1.790e-40 Identity = 73/121 (60.33%), Postives = 93/121 (76.86%), Query Frame = 2
Query: 116 RQAPDTHLDASATTFRADFLA-DGGQR---VVTSPPYKGAMKFVKAALSVAKKCVALKLSLSFLEPCADRGEWLSANPPALCVFLRRGRYTPAPVNVGEFWGVWYSTGADTTTAGGSKLVF 466
R +PDT+LDAS+ +F D+LA GQ+ VV+SPPY+GA+ FVKAAL+VAK+ VALKL LSFLEPCADR WL ANPPALC+ + R RY PA V VGEF GVWY G+ ++++ +KL+F
Sbjct: 10 RLSPDTNLDASSASFADDYLAAHNGQQPDWVVSSPPYEGALAFVKAALTVAKEGVALKLPLSFLEPCADRAVWLQANPPALCMMMSRARYQPALVRVGEFRGVWYPPGSGSSSSDSTKLLF 130 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16648.1 >prot_C-linearis_contig9.16648.1 ID=prot_C-linearis_contig9.16648.1|Name=mRNA_C-linearis_contig9.16648.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=152bp MCGGPGDAVARVLGATCDVVTNDVSSRLSPGSRQAPDTHLDASATTFRADback to top mRNA from alignment at C-linearis_contig9:2342642..2343551+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16648.1 ID=mRNA_C-linearis_contig9.16648.1|Name=mRNA_C-linearis_contig9.16648.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=910bp|location=Sequence derived from alignment at C-linearis_contig9:2342642..2343551+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:2342642..2343551+ >mRNA_C-linearis_contig9.16648.1 ID=mRNA_C-linearis_contig9.16648.1|Name=mRNA_C-linearis_contig9.16648.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at C-linearis_contig9:2342642..2343551+ (Chordaria linearis ClinC8C monoicous)back to top |