mRNA_C-linearis_contig9.16647.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16647.1
Unique NamemRNA_C-linearis_contig9.16647.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig9.16647.1 vs. uniprot
Match: D7FVG8_ECTSI (Similar to fetal globin inducing factor n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVG8_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 7.450e-51
Identity = 103/131 (78.63%), Postives = 110/131 (83.97%), Query Frame = 1 
Query:   43 AGDLEGMRMYVEAGGSVKKRDFFNNTALHRSASMGFTVITGYLLESGAEVDAVANDGWTPLHLACRWGRVGAIXXXXXXXXXXXXXXXXXRMPAELLKIKMSPRDRNGMLKLLGCKPSTMGFRNAIDIGDE 435
            AGDLEGMR+YVEAGGSVKKRDFFNNTALHRSASMGFT ITGYLLESGAEVDAVANDGWTPL            XXXXXXXXXXXXXXXXX +PAELLKI+MSPRDRN  LKLLG  PS  GF++A ++GDE
Sbjct:    2 AGDLEGMRLYVEAGGSVKKRDFFNNTALHRSASMGFTAITGYLLESGAEVDAVANDGWTPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPAELLKIEMSPRDRNETLKLLGSSPSMAGFKHAGEVGDE 132
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BLAST of mRNA_C-linearis_contig9.16647.1 vs. uniprot
Match: A0A835YZ15_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ15_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.970e-14
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 MGNMLDMSIHEFAEAGDLEGMRMYVEAGGSVKKRDFFNNTALHRSASMGFTVITGYLLE 177
            MGNM DMS+ E+AE GD+ G++ +V  GG V KRDF+ NTALHR+A MG+  I  +L+E
Sbjct:    1 MGNMFDMSLLEYAEVGDMAGVKAHVAKGGDVNKRDFYKNTALHRAACMGYADIASFLVE 59
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BLAST of mRNA_C-linearis_contig9.16647.1 vs. uniprot
Match: A0A8B7ZKS1_ACAPL (protein phosphatase 1 regulatory subunit 12A-like isoform X13 n=22 Tax=Valvatida TaxID=41166 RepID=A0A8B7ZKS1_ACAPL)

HSP 1 Score: 57.0 bits (136), Expect = 1.210e-6
Identity = 30/92 (32.61%), Postives = 48/92 (52.17%), Query Frame = 1 
Query:    7 NMLDMSIHEFAEAGDLEGMRMYVEAGGSVKKRDFFNN-------TALHRSASMGFTVITGYLLESGAEVDAVANDGWTPLHLACRWGRVGAI 261
            N++D    +   A + E  RM  +A   +  ++           TALH +A+ G+  +   L+++GA VD + NDGWTPLH A  WG+  A+
Sbjct:  168 NIIDKLGLDVENARNEEEQRMLTDANQWLNTKNIKEKRHPKSGATALHVAAAKGYIKVMSILIQAGANVDEIDNDGWTPLHAASHWGQKEAV 259
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BLAST of mRNA_C-linearis_contig9.16647.1 vs. uniprot
Match: A0A066XZI9_COLSU (Uncharacterized protein n=1 Tax=Colletotrichum sublineola TaxID=1173701 RepID=A0A066XZI9_COLSU)

HSP 1 Score: 56.2 bits (134), Expect = 2.300e-6
Identity = 29/78 (37.18%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:   22 SIHEFAEAGDLEGMRMYVEAGGSVKKRDF-FNNTALHRSASMGFTVITGYLLESGAEVDAVANDGWTPLHLACRWGRV 252
            ++H   E      +R+ + AG    ++D  +  T LHR+++     I   LLE+GA+ +A    GWTPLH ACRWGR+
Sbjct: 1144 ALHVACEHSKEAVVRLLLNAGADPNQKDITYGRTPLHRASN---AAIAKMLLENGADFNAANKAGWTPLHDACRWGRL 1218
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BLAST of mRNA_C-linearis_contig9.16647.1 vs. uniprot
Match: A0A2E7DMK3_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E7DMK3_9GAMM)

HSP 1 Score: 55.8 bits (133), Expect = 2.840e-6
Identity = 24/61 (39.34%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:   52 LEGMRMYVEAGGSVKKRDFFNNTALHRSASMGFTVITGYLLESGAEVDAVANDGWTPLHLA 234
            LE +++ VE G +V  R++   TALH +   G  ++  YL+E GA + A+ +DGW+PL +A
Sbjct:  399 LEAVQICVEHGNNVNARNYRGETALHGAGFRGVNLVVDYLVEKGANIGALTDDGWSPLAIA 459
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BLAST of mRNA_C-linearis_contig9.16647.1 vs. uniprot
Match: A0A524QEP8_9GAMM (Ankyrin repeat domain-containing protein n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A524QEP8_9GAMM)

HSP 1 Score: 54.7 bits (130), Expect = 4.780e-6
Identity = 28/71 (39.44%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:   22 SIHEFAEAGDLEGMRMYVEAGGSVKKRDFFNNTALHRSASMGFTVITGYLLESGAEVDAVANDGWTPLHLA 234
            S+++ A  GDLE ++ ++  G  + + D    TALH S      ++T YL+E GA+VDA    G TPLH+A
Sbjct:   25 SLYQAAREGDLEKVQAFLAEGADINQLDGGGFTALHASIIHRHPLVTRYLIEHGADVDAAGIYGVTPLHVA 95
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BLAST of mRNA_C-linearis_contig9.16647.1 vs. uniprot
Match: A0A3B4ABR4_9GOBI (Myosin motor domain-containing protein n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4ABR4_9GOBI)

HSP 1 Score: 54.7 bits (130), Expect = 7.120e-6
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:   52 LEGMRMYVEAGGSVKKRDFFNNTALHRSASMGFTVITGYLLESGAEVDAVANDGWTPLHLACRWGR 249
            L  +R  V  GG + + +    T LH + + G+  +   LLE+GAEV +  + GWTPLHLA ++G+
Sbjct:  203 LSDVRQLVATGGGLNQSNDDGVTLLHIACASGYREVVAVLLENGAEVHSADSHGWTPLHLAAKYGQ 268
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BLAST of mRNA_C-linearis_contig9.16647.1 vs. uniprot
Match: A0A8M1HFI5_BETSP (ankyrin repeat domain-containing protein SOWAHC isoform X4 n=1 Tax=Betta splendens TaxID=158456 RepID=A0A8M1HFI5_BETSP)

HSP 1 Score: 54.3 bits (129), Expect = 8.340e-6
Identity = 26/69 (37.68%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   43 AGDLEGM-RMYVEAGGSVKKRDFFNNTALHRSASMGFTVITGYLLESGAEVDAVANDGWTPLHLACRWG 246
            AG+++   +++V+    + K+DF   TALH +A  G     G++++SGA+V+A  + G+T LHLAC  G
Sbjct:  167 AGNMDAQHQLFVQEPSLLFKKDFITGTALHWAAKQGHQEAVGWMVDSGADVNARCHGGYTALHLACIHG 235
[Close]
BLAST of mRNA_C-linearis_contig9.16647.1 vs. uniprot
Match: A0A2R5GHQ9_9STRA (Ankyrin repeat domain-containing protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GHQ9_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.890e-5
Identity = 36/85 (42.35%), Postives = 45/85 (52.94%), Query Frame = 1 
Query:   22 SIHEFAEAGDLEGMRMYVEAG-GSVKKRDFFNN----TALHRSASMGFTVITGYLLESGAEVDAVANDGWTPLHLACRWGRVGAI 261
            +IH     G LE +R  VE G   V +R   N     T LH +A  G   I  YLL++GAE   +ANDG +PLHLAC   R  A+
Sbjct:  190 AIHMACLHGYLECVRCLVETGEDDVNRRSRGNASSGATPLHAAAMGGHIDIIAYLLKAGAEPSPLANDGTSPLHLACARDRADAV 274
[Close]
BLAST of mRNA_C-linearis_contig9.16647.1 vs. uniprot
Match: A0A318CD46_9BACT (Ankyrin n=6 Tax=Mesotoga TaxID=1184396 RepID=A0A318CD46_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 2.410e-5
Identity = 24/64 (37.50%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:   22 SIHEFAEAGDLEGMRMYVEAGGSVKKRDFFNNTALHRSASMGFTVITGYLLESGAEVDAVANDG 213
            S++  A  GDL+G++  V +GG++ +R + N T L  +A  G + I  YL+ESGA++  V ++G
Sbjct:   21 SVYNSASNGDLQGVKEAVNSGGNINERGYANKTPLMVAADYGHSEIATYLIESGADISTVDDNG 84
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FVG8_ECTSI7.450e-5178.63Similar to fetal globin inducing factor n=2 Tax=Ec... [more]
A0A835YZ15_9STRA1.970e-1455.93Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A8B7ZKS1_ACAPL1.210e-632.61protein phosphatase 1 regulatory subunit 12A-like ... [more]
A0A066XZI9_COLSU2.300e-637.18Uncharacterized protein n=1 Tax=Colletotrichum sub... [more]
A0A2E7DMK3_9GAMM2.840e-639.34Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A524QEP8_9GAMM4.780e-639.44Ankyrin repeat domain-containing protein n=1 Tax=X... [more]
A0A3B4ABR4_9GOBI7.120e-637.88Myosin motor domain-containing protein n=1 Tax=Per... [more]
A0A8M1HFI5_BETSP8.340e-637.68ankyrin repeat domain-containing protein SOWAHC is... [more]
A0A2R5GHQ9_9STRA1.890e-542.35Ankyrin repeat domain-containing protein 1 n=1 Tax... [more]
A0A318CD46_9BACT2.410e-537.50Ankyrin n=6 Tax=Mesotoga TaxID=1184396 RepID=A0A31... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:2338709..2341298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.7
Seed ortholog evalue2e-39
Seed eggNOG ortholog2880.D7FVG8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.spermatogenesis
EggNOG OGsCOG0666@1,KOG0512@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-09_001030.1
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size438
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16647.1prot_C-linearis_contig9.16647.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 2338709..2341298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930748.7604442-CDS-C-linearis_contig9:2338708..23387641622930748.7604442-CDS-C-linearis_contig9:2338708..2338764Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2338709..2338764 -
1690881229.4016263-CDS-C-linearis_contig9:2338708..23387641690881229.4016263-CDS-C-linearis_contig9:2338708..2338764Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2338709..2338764 -
1622930748.7752573-CDS-C-linearis_contig9:2339353..23395201622930748.7752573-CDS-C-linearis_contig9:2339353..2339520Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2339354..2339520 -
1690881229.413696-CDS-C-linearis_contig9:2339353..23395201690881229.413696-CDS-C-linearis_contig9:2339353..2339520Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2339354..2339520 -
1622930748.7912385-CDS-C-linearis_contig9:2340031..23402041622930748.7912385-CDS-C-linearis_contig9:2340031..2340204Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2340032..2340204 -
1690881229.4257054-CDS-C-linearis_contig9:2340031..23402041690881229.4257054-CDS-C-linearis_contig9:2340031..2340204Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2340032..2340204 -
1622930748.8087468-CDS-C-linearis_contig9:2341256..23412981622930748.8087468-CDS-C-linearis_contig9:2341256..2341298Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2341257..2341298 -
1690881229.4352376-CDS-C-linearis_contig9:2341256..23412981690881229.4352376-CDS-C-linearis_contig9:2341256..2341298Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2341257..2341298 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16647.1

>prot_C-linearis_contig9.16647.1 ID=prot_C-linearis_contig9.16647.1|Name=mRNA_C-linearis_contig9.16647.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=146bp
MGNMLDMSIHEFAEAGDLEGMRMYVEAGGSVKKRDFFNNTALHRSASMGF
TVITGYLLESGAEVDAVANDGWTPLHLACRWGRVGAIKALVQAGADVNRA
TKDGRMPAELLKIKMSPRDRNGMLKLLGCKPSTMGFRNAIDIGDE*
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mRNA from alignment at C-linearis_contig9:2338709..2341298-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16647.1 ID=mRNA_C-linearis_contig9.16647.1|Name=mRNA_C-linearis_contig9.16647.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2590bp|location=Sequence derived from alignment at C-linearis_contig9:2338709..2341298- (Chordaria linearis ClinC8C monoicous)
ATGGGAAACATGCTGGACATGAGTATCCATGAGTTTGCCGAGGTGAGAGG
GCGTGGGCGTTCAGAGAGAGAAGAGAGGAAGGGCGAGAACGGAACTTTTT
GAAGCGATACCCCCACAGGACGCAACCAACTGCTGCCGCTGTTGCATGTA
TCTTGAATACAGACAGGACTTCTCCTGACAACCCCGAAGTTGACACCCGG
CACAAGAGGCCTTGCCCCCACTTGCCCGCTCACAACAGCGTGTGAGGTAT
CCTCGCCTACTAGCGCATTTGATGCATTTCAGATCAAACGCTTTGGAGAG
AATTGCATGTACAACAGGCAGTGCGGTATGTATATGTTAGCGGTAGTCTA
CCTACAAGCGCGCGCCATGCCACCGACGCCTACATCAGTACACCAAACAG
CACTCTGGCAAACAACCCCACTGATGCAGCCTCTCGAAATTTGGTTCAAG
CTTCAAGCTTCGATCTGAATCGCCACAGCCATGCATTTGGATCAGTTCCG
ATCGTGTCGAGTTTGAATGTCTGCGCGGGTCCGCCCACCTCGGTGCGGTT
CGAACGAAAAAAACGCGGCTGCTTGAGAGGTTGAAGATACGGGTAGTCAA
GGAAGGGGCTATGCTGTATGTATGTAAATTACTGCAAGACGGCACTGCTT
TGTGGCAACTGCTGTTGCGGAACTTGTGCATCTGGAAAACCTGAAAATGT
GTCGAATGTCGTCGCTTTCCACATGCTGGAAACTGCAAGAACAACAGAGG
AAAACCAGTGCAGTCATTTTGGATATTTGTGCTAATTTACACGGTCGCTG
CCGTCACACCGAAAAAAGAGAAACTGTATCAAACCCGTGCTGAATTCCCT
ACAATACACCCGCCCATTCCCATTCCAACGGACGCCAGTGCTCTTCGTGG
TCACGCGCAAACGACGCGCATCTCCTGTCTCTGTCTCTCCCTCCCTCTCC
GCATTGGGCACCGACGTCCCTAAATGGGCGATGCTGGGAACCACATGTCG
TTCCGGCTCATGCTGAACAATGACATTCACTAAAACTATGCCTAAACATC
GGCACGCCGTGGACGCCGGTGCTGCTGCTGCTCTTGTTCCCCAGGCCGGG
GACTTAGAAGGGATGCGGATGTATGTAGAGGCGGGCGGGAGCGTAAAGAA
GAGGGACTTTTTCAACAACACGGCGCTGCATCGATCGGCCTCCATGGGCT
TCACGGTCATCACAGGGTATCTCTTGGAGTCGGGGGCCGAGGTGGACGCG
GTCGCCAATGATGGGTGGTGAGGAGAGGGCGCATGCTGTAGGAGAAACCA
GCAGCGTCCTTAAATTGAGTTGTGTGCGTGCCGCTCTGTGCGCTTGGTTC
TCCTTGATCGCCGCATCATTCGCCGAGAGGGCAGACAAACATGCGCTTTT
GAATATTTTTGGTGTGACTACCAAGTTTTTTTGTAATTCGGCGAAGGATG
GCAGATGCTGCATACTTCTGTTTACATGTACAAGCAGTCGAGAAGACGGT
TAAAGTGCCACTAAGTCACTTCTCTAGTCTTCACCCGGTTGCCGTGCTGC
CGCTTGTCGCACATACGTATCCCGTGTGTTAGAAAAGCCTGCCGTTCGTG
AAGTTCGTGACTTTCGACATCTTTGAAAATGGCCTCAAGGTCAACAGGTA
CAATCCGACCCTTACTCGGCATGCCAATGAAGCCGAACACAGAGCGATCA
AACCCGAGAAGTATCAATGGTACCCGACGTAGTCTGCCACTCCTCACAAC
TTGTTCCCCCCGCCGATCGATGCCCCAGGACACCACTTCACTTGGCATGT
CGATGGGGCCGTGTGGGTGCGATCAAAGCCCTGGTGCAGGCGGGCGCCGA
CGTGAACAGGGCGACCAAGGACGGGCGAATGCCGGCGGAGCTCTTGAAGA
TCAAGATGTCTCCGAGGGATCGCAACGGAATGCTCAAGCTCCTCGGTGAG
TCGATCGCTCTAAAGATCGGCCATATTGTCTTTAGTTCACCACACCCGCA
GGGTGCCGCATGGCTTTTGAGTTAAAAGAGTCCAGTGTTGCTTGCGAACA
ACACCTCCCTGGCTGGGAAGTCTCCGAAATCCAGAGCTCAGCAGACGTCA
AGACGCTTCTAGCAAGAGAGAGGATTCGCTTTTTTTTTGCTGGCGGGTTC
TGCACACGCGAGCGTGCTAAGGTTAAGGTCAACGCCTGCTTAATGAAGTT
GCATACAGCTGTTCTTCCGAGTATTTGGTTTTGCTTTTTGGTGTGTCCTT
GTTTCGGCTCTTGCTACTTGAGTGAACGGTCTTCTCATGTAGGTTGTTGT
TCTGAGCGTCGACTACCTGGTTTGAAAACACGTCAGCCTCATGGATCGAA
AACTCTATGAAGCCAACTGCTCCTGTGGCCCTGTGAAGGACACTCATGGA
GGAGGGTGAACGACAACACCTTACAGCGGCGTGTGTAGAAGTATGTTTTC
AGCACCGCTAACATTTGTACATCTGGGCTTGCCTAAATGCGTTTTTTGGT
GAGTATCGATGCACCCGCGTGTTGTCCCTTGCAGGTTGTAAACCATCAAC
GATGGGCTTCAGAAATGCGATCGATATCGGCGACGAGTAA
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Coding sequence (CDS) from alignment at C-linearis_contig9:2338709..2341298-

>mRNA_C-linearis_contig9.16647.1 ID=mRNA_C-linearis_contig9.16647.1|Name=mRNA_C-linearis_contig9.16647.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at C-linearis_contig9:2338709..2341298- (Chordaria linearis ClinC8C monoicous)
ATGGGAAACATGCTGGACATGAGTATCCATGAGTTTGCCGAGATGGGAAA
CATGCTGGACATGAGTATCCATGAGTTTGCCGAGGCCGGGGACTTAGAAG
GGATGCGGATGTATGTAGAGGCGGGCGGGAGCGTAAAGAAGAGGGACTTT
TTCAACAACACGGCGCTGCATCGATCGGCCTCCATGGGCTTCACGGTCAT
CACAGGGTATCTCTTGGAGTCGGGGGCCGAGGTGGACGCGGTCGCCAATG
ATGGGTGGCCGGGGACTTAGAAGGGATGCGGATGTATGTAGAGGCGGGCG
GGAGCGTAAAGAAGAGGGACTTTTTCAACAACACGGCGCTGCATCGATCG
GCCTCCATGGGCTTCACGGTCATCACAGGGTATCTCTTGGAGTCGGGGGC
CGAGGTGGACGCGGTCGCCAATGATGGGTGGACACCACTTCACTTGGCAT
GTCGATGGGGCCGTGTGGGTGCGATCAAAGCCCTGGTGCAGGCGGGCGCC
GACGTGAACAGGGCGACCAAGGACGGGCGAATGCCGGCGGAGCTCTTGAA
GATCAAGATGTCTCCGAGGGATCGCAACGGAATGCTCAAGCTCCTCGGAC
ACCACTTCACTTGGCATGTCGATGGGGCCGTGTGGGTGCGATCAAAGCCC
TGGTGCAGGCGGGCGCCGACGTGAACAGGGCGACCAAGGACGGGCGAATG
CCGGCGGAGCTCTTGAAGATCAAGATGTCTCCGAGGGATCGCAACGGAAT
GCTCAAGCTCCTCGGTTGTAAACCATCAACGATGGGCTTCAGAAATGCGA
TCGATATCGGCGACGAGTAAGTTGTAAACCATCAACGATGGGCTTCAGAA
ATGCGATCGATATCGGCGACGAGTAA
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