mRNA_C-linearis_contig9.16645.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16645.1
Unique NamemRNA_C-linearis_contig9.16645.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig9.16645.1 vs. uniprot
Match: D7G0P9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0P9_ECTSI)

HSP 1 Score: 331 bits (848), Expect = 6.610e-108
Identity = 203/326 (62.27%), Postives = 229/326 (70.25%), Query Frame = 2 
Query:  140 MKVIGSSIIAALAQRKSTLINAGVGFSTFAVGDAISQGARPQPQVLLDERRRRQRQQLAKTSGGQQFVGELRQRTRGVDLARSAKVGLLGIFLNGFALGAWYRVLDRYIGSDRTRIQQVLKKVVVDQFVYAPFSITSFVGYAAVLNGGGPANVLANTKSSLVDHGLETWIMDWKVWPAANVIMFRFIPSSYRPSFASLVQVAWQAYMSSVSYDNPSPTK-------ATIKAGNS-----------GGVFVRGGGGGGRAGVGATDGVAANGTGGDGVRTGGGEGITPSPGLPVAVAAIEG-GTARRAVMVDRRSTGRYAYNSTSSS 1060
            MKV GSS IAALA R+STLIN  VGFSTFAVGDA+SQGARPQ Q+++  RRR+   Q  + S  QQF+     RTR VD ARSAKVGLLGI LNGFALGAWYRVLDRYIGSDRTR QQ+LKK+VVDQ VYAPFSITSFVGYAAVLNGGGPA V+  TK +L +     W+ DWKVWPAAN++MFRFIPSSYRPSFAS+VQVAWQAY+SSVSYD+P           ATI+AG +               VRGG  G      A   VAA        +TGGG+   PSPG+PV   AI G GT R  V VDRR+TGRYAY S+ SS
Sbjct:    1 MKVFGSSFIAALANRRSTLINGAVGFSTFAVGDALSQGARPQSQLVVAGRRRQH--QSEEPSWQQQFID----RTRRVDYARSAKVGLLGIMLNGFALGAWYRVLDRYIGSDRTRFQQILKKLVVDQMVYAPFSITSFVGYAAVLNGGGPAKVVDETKKNLGETFWSIWLTDWKVWPAANLVMFRFIPSSYRPSFASMVQVAWQAYLSSVSYDSPHXXXXXXXTQVATIQAGIAMEAXXXXXXXXXXXLVRGGEAGKDLAGKAAAAVAAV------AKTGGGDESVPSPGVPVGSNAIAGAGTPR--VAVDRRATGRYAYTSSVSS 312
[Close]
BLAST of mRNA_C-linearis_contig9.16645.1 vs. uniprot
Match: A7RSR7_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RSR7_NEMVE)

HSP 1 Score: 84.3 bits (207), Expect = 1.410e-15
Identity = 48/144 (33.33%), Postives = 74/144 (51.39%), Query Frame = 2 
Query:  374 DLARSAKVGLLGIFLNGFALGAWYRVLDRYIGSDRTRIQQVLKKVVVDQFVYAPFSITSFVGYAAVLNGGGPANVLANTKSSLVDHGLETWIMDWKVWPAANVIMFRFIPSSYRPSFASLVQVAWQAYMSSVSYDNPSPTKATI 805
            D+ R+ K+G +G+F+ G  +  WY  LD+ + + R      LKKV +DQ ++AP  I  F G    ++G      L   K  L +H L T I ++K+WPA  ++ F  IP SYR  F     V W  Y+  ++ + PS T   +
Sbjct:   47 DVKRTLKMGAVGLFV-GPIIRTWYLTLDKLVVASRRPKLDALKKVFLDQSLFAPCFIAVFFGIKCTVSG----QTLDEYKQVLREHYLNTLIANYKLWPAVQIVTFSIIPFSYRVLFVQCFAVFWNTYLCWMA-NRPSETNTEL 184
[Close]
BLAST of mRNA_C-linearis_contig9.16645.1 vs. uniprot
Match: A0A6B2LKY0_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LKY0_9EUKA)

HSP 1 Score: 82.8 bits (203), Expect = 2.580e-15
Identity = 50/137 (36.50%), Postives = 74/137 (54.01%), Query Frame = 2 
Query:  365 RGVDLARSAKVGLLGIFLNGFALGAWYRVLDRYIGSDRTR----IQQVLKKVVVDQFVYAPFSITSFVGYAAVLNGGGPANVLANTKSSLVDHGLETWIMDWKVWPAANVIMFRFIPSSYRPSFASLVQVAWQAYMS 763
            RG +  R AK+ + G  L+G     WYR+LD+ I + R+          KK+++DQ V+APF + +F+   AVL+G        N K  L    L T  +++ +WPAA  I FRF+PS +R  + SLV V W   +S
Sbjct:   13 RGFEWTRCAKMCIYGAVLSGPLNHYWYRLLDQRITAGRSLGWLGHSMDYKKLLLDQVVFAPFIVGAFLASMAVLDGK-----YKNIKEKLESDFLPTLKLNYYLWPAAQFINFRFVPSHHRVGYVSLVIVGWSCLLS 144
[Close]
BLAST of mRNA_C-linearis_contig9.16645.1 vs. uniprot
Match: A0A6A5BU89_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BU89_NAEFO)

HSP 1 Score: 82.8 bits (203), Expect = 7.410e-15
Identity = 41/144 (28.47%), Postives = 73/144 (50.69%), Query Frame = 2 
Query:  371 VDLARSAKVGLLGIFLNGFALGAWYRVLDRYIG---------SDRTRIQQVLKKVVVDQFVYAPFSITSFVGYAAVLNGGGPANVLANTKSSLVDHGLETWIMDWKVWPAANVIMFRFIPSSYRPSFASLVQVAWQAYMSSVSY 775
            +D  R+ K+   GI + G  L  WY+ LDR++          S+  R     ++++VDQ ++APF++  F+ Y   + G    ++    K  +      T +++W +WPAA ++ F  +P  YR  F + V + W AY+S V +
Sbjct:   61 LDWVRTLKMASFGIIMIGPTLHLWYKFLDRFVAKKYPVGYVLSNTERTLNAARQMLVDQTLFAPFALFQFLAYMGAIEGKSFDSIAEKMKHDM----WPTLVVNWYIWPAAQMLNFTLVPLQYRVLFVNSVAILWNAYLSHVQH 200
[Close]
BLAST of mRNA_C-linearis_contig9.16645.1 vs. uniprot
Match: A0A8K0C493_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0C493_9COLE)

HSP 1 Score: 82.4 bits (202), Expect = 7.910e-15
Identity = 48/131 (36.64%), Postives = 70/131 (53.44%), Query Frame = 2 
Query:  371 VDLARSAKVGLLGIFLNGFALGAWYRVLDRYIGSDRTRIQQVLKKVVVDQFVYAPFSITSFVGYAAVLNGGGPANVLANTKSSLVDHGLETWIMDWKVWPAANVIMFRFIPSSYRPSFASLVQVAWQAYMS 763
            V+L R+A+   +G+FL G AL  WYRVL +  G D+     VLKKV +DQFV+AP  I  F+    V+ G  P   +A  K + +D      I ++K+WP   +  F  +P  Y+     LV + W  Y+S
Sbjct:   47 VNLKRTAQFASVGLFLAGPALTTWYRVLAKTFG-DKGHTSVVLKKVALDQFVFAPAFIGVFLTALGVVQGKDPQVTVAEVKKNYLD----VVISNYKLWPWVQLGNFYLVPLRYQVLVVQLVAILWNTYLS 172
[Close]
BLAST of mRNA_C-linearis_contig9.16645.1 vs. uniprot
Match: L7LZH6_RHIPC (Uncharacterized protein n=2 Tax=Rhipicephalus TaxID=426455 RepID=L7LZH6_RHIPC)

HSP 1 Score: 81.6 bits (200), Expect = 1.030e-14
Identity = 47/130 (36.15%), Postives = 70/130 (53.85%), Query Frame = 2 
Query:  371 VDLARSAKVGLLGIFLNGFALGAWYRVLDRYIGSDRTRIQQVLKKVVVDQFVYAPFSITSFVGYAAVLNGGGPANVLANTKSSLVDHGLETWIMDWKVWPAANVIMFRFIPSSYRPSFASLVQVAWQAYM 760
            +D+ R+A+  ++G+   G AL  WY  L+R +GS   R   V+KKV +DQ V+ P  + SF+    V  G        + K +L    L     ++ +WPAA +I FRF+P SYR  FAS V + W  Y+
Sbjct:   45 IDVPRAARFFIMGVAFVGPALRVWYLALERIVGSSGGRAM-VVKKVFLDQAVFTPVFLPSFL----VTLGALQQRSWGSIKDTLRADYLPILKANYMLWPAAQLINFRFVPLSYRVPFASCVALVWNTYL 169
[Close]
BLAST of mRNA_C-linearis_contig9.16645.1 vs. uniprot
Match: UPI0018893730 (protein Mpv17-like n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=UPI0018893730)

HSP 1 Score: 81.3 bits (199), Expect = 1.200e-14
Identity = 45/130 (34.62%), Postives = 71/130 (54.62%), Query Frame = 2 
Query:  371 VDLARSAKVGLLGIFLNGFALGAWYRVLDRYIGSDRTRIQQVLKKVVVDQFVYAPFSITSFVGYAAVLNGGGPANVLANTKSSLVDHGLETWIMDWKVWPAANVIMFRFIPSSYRPSFASLVQVAWQAYM 760
            VD+ R+A+  L+G    G  +  W+  L+R++GS       V +KV++DQ ++AP  I SF+    V+ G        + + SL  + L+     + +WPAA ++ FRF+P SYRP FA  V V W  Y+
Sbjct:   24 VDVVRAARFFLMGAGFAGPVIRIWHLTLERFVGSGVGAFV-VARKVMIDQALFAPVFIASFL----VVLGAFKRRSWHDIEQSLRTNYLQILKTSYVIWPAAQLVNFRFVPLSYRPPFAGCVAVVWSTYL 148
[Close]
BLAST of mRNA_C-linearis_contig9.16645.1 vs. uniprot
Match: A0A8B7Y6M9_ACAPL (protein Mpv17-like isoform X3 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y6M9_ACAPL)

HSP 1 Score: 81.6 bits (200), Expect = 1.400e-14
Identity = 46/130 (35.38%), Postives = 68/130 (52.31%), Query Frame = 2 
Query:  374 DLARSAKVGLLGIFLNGFALGAWYRVLDRYIGSDRTRIQQVLKKVVVDQFVYAPFSITSFVGYAAVLNGGGPANVLANTKSSLVDHGLETWIMDWKVWPAANVIMFRFIPSSYRPSFASLVQVAWQAYMS 763
            D+ R+ +    G+ + G  L AWYR LD+ I    T + + LK V VDQ V  P  +T F     + +G  PA V+   K ++      T I ++K+WPAA VI F F+P  +R   A+ V + W  Y+S
Sbjct:   48 DVIRTVRQASFGLVIGGPLLFAWYRTLDKVIKG--TGVIKALKSVAVDQMVMPPIFLTLFYSAIGLTSGLSPAEVVDKLKQNMK----PTLITNYKIWPAAQVINFYFVPLQHRVLTANFVALFWNIYLS 171
[Close]
BLAST of mRNA_C-linearis_contig9.16645.1 vs. uniprot
Match: A0A6P8HN46_ACTTE (protein Mpv17-like isoform X2 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HN46_ACTTE)

HSP 1 Score: 81.6 bits (200), Expect = 1.400e-14
Identity = 43/130 (33.08%), Postives = 76/130 (58.46%), Query Frame = 2 
Query:  374 DLARSAKVGLLGIFLNGFALGAWYRVLDRYI-GSDRTRIQQVLKKVVVDQFVYAPFSITSFVGYAAVLNGGGPANVLANTKSSLVDHGLETWIMDWKVWPAANVIMFRFIPSSYRPSFASLVQVAWQAYM 760
            D+ R+ ++G++G+ L G  L AWY  LD+ +  S R ++   LKK+++DQ ++AP  I  F   + +L+G       +  K +L +  +ET I ++K+WPAA ++ F F+P  +R  F  +V + W  Y+
Sbjct:   42 DVTRTVRMGVVGLCL-GPILRAWYLTLDKVVVASSRPKLDG-LKKMLLDQALFAPVCIGFFYCVSEMLSG----KTFSQCKETLKERYVETLIANYKLWPAAQIVNFTFVPLEHRVGFVQIVAIFWNTYL 165
[Close]
BLAST of mRNA_C-linearis_contig9.16645.1 vs. uniprot
Match: A0A6P8HUY4_ACTTE (protein Mpv17-like isoform X1 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HUY4_ACTTE)

HSP 1 Score: 81.6 bits (200), Expect = 1.590e-14
Identity = 43/130 (33.08%), Postives = 76/130 (58.46%), Query Frame = 2 
Query:  374 DLARSAKVGLLGIFLNGFALGAWYRVLDRYI-GSDRTRIQQVLKKVVVDQFVYAPFSITSFVGYAAVLNGGGPANVLANTKSSLVDHGLETWIMDWKVWPAANVIMFRFIPSSYRPSFASLVQVAWQAYM 760
            D+ R+ ++G++G+ L G  L AWY  LD+ +  S R ++   LKK+++DQ ++AP  I  F   + +L+G       +  K +L +  +ET I ++K+WPAA ++ F F+P  +R  F  +V + W  Y+
Sbjct:   48 DVTRTVRMGVVGLCL-GPILRAWYLTLDKVVVASSRPKLDG-LKKMLLDQALFAPVCIGFFYCVSEMLSG----KTFSQCKETLKERYVETLIANYKLWPAAQIVNFTFVPLEHRVGFVQIVAIFWNTYL 171
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0P9_ECTSI6.610e-10862.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A7RSR7_NEMVE1.410e-1533.33Predicted protein n=2 Tax=Nematostella vectensis T... [more]
A0A6B2LKY0_9EUKA2.580e-1536.50Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A6A5BU89_NAEFO7.410e-1528.47Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
A0A8K0C493_9COLE7.910e-1536.64Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
L7LZH6_RHIPC1.030e-1436.15Uncharacterized protein n=2 Tax=Rhipicephalus TaxI... [more]
UPI00188937301.200e-1434.62protein Mpv17-like n=1 Tax=Rhipicephalus microplus... [more]
A0A8B7Y6M9_ACAPL1.400e-1435.38protein Mpv17-like isoform X3 n=1 Tax=Acanthaster ... [more]
A0A6P8HN46_ACTTE1.400e-1433.08protein Mpv17-like isoform X2 n=1 Tax=Actinia tene... [more]
A0A6P8HUY4_ACTTE1.590e-1433.08protein Mpv17-like isoform X1 n=1 Tax=Actinia tene... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:2313627..2319710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score334.3
Seed ortholog evalue6.3e-89
Seed eggNOG ortholog2880.D7G0P9
Preferred nameSYM1
KEGG koko:K03259,ko:K13348,ko:K13349
KEGG Pathwayko01521,ko03013,ko04066,ko04146,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04146,map04150,map04151,map04211,map04910
KEGG ModuleM00428
Hectar predicted targeting categorymitochondrion
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006066,GO:0006067,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016021,GO:0016999,GO:0017144,GO:0019866,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034308,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901615
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
Ec32 ortholog descriptionMpv17/PMP22
Ec32 orthologEc-09_001220.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Exons4
Model size1135
Cds size996
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16645.1prot_C-linearis_contig9.16645.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 2313766..2319710 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930748.3885896-UTR-C-linearis_contig9:2313626..23137651622930748.3885896-UTR-C-linearis_contig9:2313626..2313765Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2313627..2313765 +
1690881229.1838124-UTR-C-linearis_contig9:2313626..23137651690881229.1838124-UTR-C-linearis_contig9:2313626..2313765Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2313627..2313765 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930748.406354-CDS-C-linearis_contig9:2313765..23139861622930748.406354-CDS-C-linearis_contig9:2313765..2313986Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2313766..2313986 +
1690881229.200319-CDS-C-linearis_contig9:2313765..23139861690881229.200319-CDS-C-linearis_contig9:2313765..2313986Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2313766..2313986 +
1622930748.4202754-CDS-C-linearis_contig9:2317778..23178951622930748.4202754-CDS-C-linearis_contig9:2317778..2317895Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2317779..2317895 +
1690881229.2127087-CDS-C-linearis_contig9:2317778..23178951690881229.2127087-CDS-C-linearis_contig9:2317778..2317895Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2317779..2317895 +
1622930748.4347155-CDS-C-linearis_contig9:2318301..23185171622930748.4347155-CDS-C-linearis_contig9:2318301..2318517Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2318302..2318517 +
1690881229.223383-CDS-C-linearis_contig9:2318301..23185171690881229.223383-CDS-C-linearis_contig9:2318301..2318517Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2318302..2318517 +
1622930748.452692-CDS-C-linearis_contig9:2319268..23197101622930748.452692-CDS-C-linearis_contig9:2319268..2319710Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2319269..2319710 +
1690881229.2385192-CDS-C-linearis_contig9:2319268..23197101690881229.2385192-CDS-C-linearis_contig9:2319268..2319710Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2319269..2319710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16645.1

>prot_C-linearis_contig9.16645.1 ID=prot_C-linearis_contig9.16645.1|Name=mRNA_C-linearis_contig9.16645.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=332bp
MKVIGSSIIAALAQRKSTLINAGVGFSTFAVGDAISQGARPQPQVLLDER
RRRQRQQLAKTSGGQQFVGELRQRTRGVDLARSAKVGLLGIFLNGFALGA
WYRVLDRYIGSDRTRIQQVLKKVVVDQFVYAPFSITSFVGYAAVLNGGGP
ANVLANTKSSLVDHGLETWIMDWKVWPAANVIMFRFIPSSYRPSFASLVQ
VAWQAYMSSVSYDNPSPTKATIKAGNSGGVFVRGGGGGGRAGVGATDGVA
ANGTGGDGVRTGGGEGITPSPGLPVAVAAIEGGTARRAVMVDRRSTGRYA
YNSTSSSAGTARDGGAGSSSGALKDDGSVSGG
back to top

mRNA from alignment at C-linearis_contig9:2313627..2319710+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16645.1 ID=mRNA_C-linearis_contig9.16645.1|Name=mRNA_C-linearis_contig9.16645.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6084bp|location=Sequence derived from alignment at C-linearis_contig9:2313627..2319710+ (Chordaria linearis ClinC8C monoicous)
CAAAGTCTACTCCCGTTGCCTCAAGTTGAGCCGTCAAGCTTGCCTCTCTC
CCCTTCCTCTCTCCCCTTCCACGAGAGACGCCCTTCGCACAACCCGCGCC
TTCCTTCCTTCCTTCCTTCCTTCCTAGCCAGTACCCCTCATGAAGGTGAT
CGGGTCGAGCATCATAGCTGCTTTAGCTCAGCGCAAATCAACTTTGATCA
ACGCCGGGGTTGGCTTTTCGACGTTTGCTGTCGGGGACGCCATTTCGCAG
GGTGCAAGGCCCCAGCCGCAAGTCCTGCTGGATGAGAGGCGGCGGCGGCA
GCGGCAGCAACTCGCCAAGACCTCGGGGGGACAGCAGTTCGTGGGCGAAC
TGCGTCAAAGGTGTGTGTTGATGTCGGTCGGTTGAATTTGAAGGGAGAAA
TAGAGGGCCATGTTTTGAATGCTTCCCATCACCGCGGCGCCAATGGTTCT
CACGCGAAAGGTTGCTTCCGCGTGCGCGCGCCATTGACGCGCCGCTGCTG
TTTCACTCTCATGAGAGAGCCGTGTGGCTCTTTCATAGGCCGTGGTAGTC
TATGTGTAGCTGTTGGTTGAATCAAATATTGCACACGCCCATTTTTTTCG
CCGCAATGACAGCATTGGAGGGCACTCCAGCCACCTTTTTTCTCTTGCAC
ACGCCTCTTCCGAACGCTTACCTTGCTGAGGTCGCGAAGGCGTTCCGCTG
AGGCTGCTTTCACCTACCCAACAATTCTTAGATGCCGACTCGGTGCCGTC
ACAGTATGTAGGTCGGAGTGGTAGGTCGGGGGCAGCAAGAAAAGCATTTT
GGCACGTTGCACTTTCGTGCGGGTGTTTTTTTTTCCAACCAACACGCGTT
ATGCGCTATGGATCCAGGGAGAGTTAAAAGCGACCGCTTTTGAAACCAGC
GAGTTTCATCTTCAGTGGGTGCATCAGCAATGCTTATCGTTGACGGATGA
AAGCCGTATGCCTCCAAGTCACGCATTTTCGCTGTCTCATGACACTCGAA
TTCACCCGCCACTACGGTCCTATGTAAGCCCATGTACATGCACTTTCGTA
CATACATACGAGCAGCGTTCCCACGCCTCGGGCCTGGGTGTTTTCCCCTT
ATGTGCCCTCTCGCGCCATGCATGTGCAAACCGGGAAGTGATTTTGAGCG
AGCACCCATACATGCATGGGAAATATGAGTGTATTATCAAGGCTTGGGCT
GCTCGTTTGCACTTGGTCTCCTGTTTTGCCCTCTCTCCCTCCATGCCTGC
CAATTTTAATTTTCGAACGAAAAGCAGCCACAGCGTGCTCTTTTTGATTT
GGCGAAGATGTGAGTACCCTGTGTCCTGTGAGCCATACATCCTACCGGGG
GAGCTTTACTGTTAGACTCTCGCGTGACCCTCTTTTTTGGCCAAGTTTCT
GTCACACGGGCCTATATTTGAAAAGATTTCAATTCCTTCTTTGACCAATG
AAATCCCACCAATTTTGACAACTTTCGACACGTTCAGGCGAACAGGTCGC
AAACGATTGTGTATAAGCGTGATTTTTTTGCGTGTGTGTGTGTGTGTGTG
TGTGTTTTTTCGGCTGTGTGTGTTCGTGTGCGTGGTCTTGGTGTGCAGTG
TGTAGGGTGCACAGACAGCAGGAGCTGCAAAAAGTGTGCGTGGTGCGCTG
CTCCGCCCAACTGGACGGGCGGGGGGTGGGGGGCGATGCTGCTGTAGTCG
AATGGAGACTGCGGGCGTGCAGTTCAGATTTGGACACGCAAAACTTGCTG
TAGGTATTTAAGGTGTACCTCTTCGGGCTTGTGTACCCTTTCCCTGCTAA
AAGTGTGCGTGTTCTTTAGGAGTCTCTGATGGCTCTAGCACTTTTGTGAC
CACGGGCTGTGATCTTGCTAGATTTGAGGGATTAGCAACTGTAACGAGTT
TAATGTCAAGACAACAACAACAACAACAACAACAACAACAACAACCGTTT
TTTTTTGCGGTGCGGAATTTTTCGGTCATTCCTCAGAATTTGTGCGAGGC
CCACATCCGCTAACGCGGGCGCTAGAGCAGCTTTTGCTACCGTTCCAGCG
CCAAAAGTAGCTGTGACTACCTCACTCGCGACGCAATGTCACTTGAACCT
CGCAAAAGTTGGGGGAGGGCGCGGTCGGATGCAATACCTTTCGATGTCAA
CCTAGAAAAAATCGCTGTTTTGAGAGAAATTGTTTTTTTCACGACTCCAT
GTCGCCGCTCTGGACATCGGCTGGTTCAGGAGGAGGAGGAGTTGGGCCTG
TGCCTCGTCGGCGTTGTCAGCAATATTCGTTGCGACGGACCGTGGGAGCG
TGGTCCCCCCTTCCCACTCCCTACCAATGAATAAGCCGACTACAGCGGAA
CTGCTGTCTGAAGTGCTGTCTGTACAAAAACACACGGTAGGCGTGGGAAC
AAGAATGGAGCACGCAGCTGCTGTCTGAAGTGCTGCCAGAATGACATTCC
GCGGACATACAGTACAGTGAAAAAGAACAGCAAACCAAACAAAGCCATCA
CATCAATTGACAATATCCCGAGTCTATCCCGAACGCCTGTGTTAGGCACA
GCATTGTAAACATCGACACTGATTAGGAATCGTTCCACATTGAAGGGGTC
TTCCCCGATGCAGGTACACACTTAAGGCACCCGGGGTACCCGCGCCATCG
CTGTGGCGTCTCTCTACAAAACCAGTGACGTCATCACAAAAACCCAGCAC
CAACATCCATCCAGAAAAAAAAGAAATAATTGCCAACACATAATGTTTGT
CCGTGCGCCACGGTTCGATGTCGTCCGCATGCTCCGGTGCCGCTGCTCCG
GTGCCGCTGTGGCCAGTCCTAGCACGACCACACTCGACCCGCTCCGTCCG
TACACGCTCTCGTCGCTGTCCTTCTCAGCCGGTCCCTCGCTTTCTCCCTA
GTTGCACTAGGACCCGCTTTTGCCCATGTTAGGGCCCGCTTTTGCACAAC
AGAATGCGTGGTGTTGGCGCAGCCGATCCTGGTGTGGATTCTTGCGTGAC
CTCCGCAAAAACGGGAGCTAGATATCTCTGTCAGCTCTGTACACGTTCAC
AGCAGCCGGCGAAAAAGACCGAATTGTACTTGATCTTCGAGTTCGAAGGT
TTGTAATTTACCGATTGAAAAGCGCACCGTTAGCTAGCTAGATGTGTCCT
GTTCACAGGTGTCCTCTGAGTGTAAAGAAACAAATCGCTTGTGGAAGCGA
GTATTCGGTCATGCCAGTACACCAGCAGTCCACCCTCCAATATCAAGTCA
AAAGACGATATGGCGTAGTCAAAAGGTAGTGCGGATGAACAATTTGTTTG
GAGAAACACACGCACAAAAAACGAATAATCGGCCCACGCGCATACACGAA
ATAGGGGGGCCACGCGAGAGCCTAACTGTCTTGTATGAGCGCACAAGCGC
GAGTACGCAAATCATCCGCACAAGTACGTTGCGCGGATCGTGGTTCTCTG
GCTGCTGCTAGGTAAGCACGCCGGCGTAGGCGCGTCACCGATGTAGGCGC
GTCACCGCTGTAGGCGCGTCACCGCTCTCGCGCCCTCGCGAGGTCGCCCC
CCTTCTGGCACAATTCAAACCCGCCCCTGATCCTCTCTTCTTTTCTGAGG
ATTTGTGGCTCTTCGTCGTCTCCCTCCTCTGTCCCGTGTGTCCTCACGGC
TCCCATCCTTGGACTGTTGCTCTCGAGAGGACTCACTGTCAACCTAGCGA
GTCGAGGGATTGAACCCTTCAGCAGTGCGTATGACGCAAACCCTTAAAGA
GGCGGAATGACTTTACAATCATCAGCAATAGGGAAAGAGGGCGCATCGTG
ATGGCAACCTCTCTCTCCGCTTGCGGTTTTTGTTCTTGCGCGTGTGGATA
TGAAGTGGCGATTTGTTTCTTGCTTGCGCGATAGAAGATGCTCTCTTGTC
ACACAGCCGTACGCATGTAAGAGTACTGAGGCTCGTGCCAAGGGCGTTAG
TCCTCGCTCCTACCGCCCTTCCTCTCCCACGCACCGCCCCTATCAACATC
GCAGCTCTATTCCAATGTAATTATATTTGTGCTTCGAAGTATACTTCGGA
TGAATATCCCAACTAAACTTGTACTCCGCACTTCGCAGTGTGCTTATGTT
CCTCTCTCTCCCTCTCCTGCTGTGTTGGCTGCACGGCTGTACGGCCCTCC
AGAACAAGAGGGGTGGACCTCGCTCGAAGCGCCAAGGTCGGCCTTCTGGG
CATCTTCCTCAACGGCTTTGCGTTAGGGGCATGGTACCGCGTGCTCGACC
GCTACATCGGGTCTGACAGGTGGAACCTAAAGTGTGAGGGGTGTTTTTTG
TACGCATCTCCTTCCTCTTTGTACGTATCTCCTTCCTTTTTGTACGTATC
TCCTCCCTTTTTGTCGTGTCTCCTTCCTTTTTGTACGTACCTCCTTCCTT
GGCGTGTGTGCATCGGGCGGCATGCTTGACAGTCCGGGAAGACTGGTTGA
ACCGTGCCGGTAAAAGGTATACAGATAAAAGCGAAAAGTAGGGCGCTCAC
GCCAAGCCAAGATAACGAGCGAGAGAACATGCGGGAGGGAAGAGCCACAA
GAGGAACTACGTCTTAACGCCGAGCGGCGTCGATAAGCTCCTGTTTCCCT
CGAGCGCTTTCTGGTTGTTTTTACTTGTTCCTCGCATCACCCCGCTTTCT
TCCGTGCGCGCACGCATGCCCTCAGGACGCGCATCCAGCAGGTCCTCAAG
AAGGTCGTGGTCGACCAGTTCGTGTACGCCCCGTTCTCCATCACCAGCTT
CGTCGGCTACGCGGCCGTCCTGAACGGCGGTGGCCCCGCCAACGTGTTGG
CCAACACCAAAAGCAGCCTGGTGGACCATGGTCTGGAAACGTGGATCATG
GATTGGAAGGTCTGGCCCGCCGCCAACGTGATCATGTTTAGGTGAGAAGA
GGCACGTTGATGCGCACACGCGGGGGGGCGGGGGAAGGGAACGGGGGGGG
AGGCGAGAGAGAGGTGCAGGCGCCGCAGGGGGGGGTGGGGCGGGTGGCCG
CGTCGTGGGCTGGAATTCTTGGCCCCCTTCGACGTTTTCGCGCATTAGCT
CGGGGACGCGTGTTTTAGGGTGAATGGATAAAGAAGAAAAAAATGTATCT
TGTTGTGGGGTTCATGGCTTGGAAGACCTGACAGCTGTTGAGGCTCACGC
TAGAACGTGCGGGGGCGGCCGCGGGAGGCTTTCCCCGGGGGTTCCGAGGC
CAGGACTCTTTGTGTTGTTCAATGAAATGCGGCACCCTGTTTGGGCTGGG
TTTGTGGAAGGGGCTCTCTTTGCTCTTGAGTAATGGTTTTATCTGCCGTA
GATGCGGCCAGTACGCTCTCCGTCTTTGTCTTTGTCTTTGTCTCTCTCCC
TCTCTCTCTCTCTCTCTCACTCTCTCTCTCTCTCTGCTATCTCTGTCTCT
TCCCGTCAAGGGCTGCGTATGCAGCTCTCCTCGCCGCGCATTGGACCTCC
CTGCTGACGGCAACAGCTTACACTCTATCTTGGACTACAGTATCCTTTGT
CCTCGAACCGCTACATCCAACTATCAAAAACTATTATAAGCAGCCCACCG
TTTTGTTCCGTTCCCCCACCACCGTAACAAAACAAACTGGGGTTATCTCA
TCTGTCGTACCTTCTTCCCGACATGATCGACCTCTCGCGCAGGTTTATCC
CGTCGTCCTACCGGCCATCTTTCGCCAGCCTGGTCCAAGTGGCGTGGCAG
GCTTACATGTCCAGCGTAAGCTACGACAACCCGTCTCCCACCAAGGCTAC
CATCAAGGCAGGCAACAGCGGCGGGGTTTTTGTGAGAGGAGGAGGAGGAG
GGGGGCGGGCAGGGGTAGGGGCTACAGACGGGGTCGCTGCGAATGGGACA
GGGGGGGATGGGGTGCGAACCGGGGGAGGGGAAGGAATCACCCCTTCCCC
GGGGTTGCCTGTAGCGGTCGCCGCCATCGAAGGCGGTACCGCGCGACGGG
CGGTGATGGTCGATAGGCGTTCCACAGGGCGCTACGCGTACAATAGCACC
TCTAGCAGCGCCGGGACAGCTCGTGATGGTGGTGCTGGCTCCAGCTCTGG
GGCCCTCAAAGACGACGGTAGCGTTAGTGGCGGC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig9:2313627..2319710+

>mRNA_C-linearis_contig9.16645.1 ID=mRNA_C-linearis_contig9.16645.1|Name=mRNA_C-linearis_contig9.16645.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1992bp|location=Sequence derived from alignment at C-linearis_contig9:2313627..2319710+ (Chordaria linearis ClinC8C monoicous)
ATGAAGGTGATCGGGTCGAGCATCATAGCTGCTTTAGCTCAGCGCAAATC
AACTTTGATCAACGCCGGGGTTGGCTTTTCGACGTTTGCTGTCGGGGACG
CCATTTCGCAGGGTGCAAGGCCCCAGCCGCAAGTCCTGCTGGATGAGAGG
CGGCGGCGGCAGCGGCAGCAACTCGCCAAGACCTCGGGGGGACAGCAGTT
CGTGGGCGAACTGCGTCAAAGATGAAGGTGATCGGGTCGAGCATCATAGC
TGCTTTAGCTCAGCGCAAATCAACTTTGATCAACGCCGGGGTTGGCTTTT
CGACGTTTGCTGTCGGGGACGCCATTTCGCAGGGTGCAAGGCCCCAGCCG
CAAGTCCTGCTGGATGAGAGGCGGCGGCGGCAGCGGCAGCAACTCGCCAA
GACCTCGGGGGGACAGCAGTTCGTGGGCGAACTGCGTCAAAGAACAAGAG
GGGTGGACCTCGCTCGAAGCGCCAAGGTCGGCCTTCTGGGCATCTTCCTC
AACGGCTTTGCGTTAGGGGCATGGTACCGCGTGCTCGACCGCTACATCGG
GTCTGACAGAACAAGAGGGGTGGACCTCGCTCGAAGCGCCAAGGTCGGCC
TTCTGGGCATCTTCCTCAACGGCTTTGCGTTAGGGGCATGGTACCGCGTG
CTCGACCGCTACATCGGGTCTGACAGGACGCGCATCCAGCAGGTCCTCAA
GAAGGTCGTGGTCGACCAGTTCGTGTACGCCCCGTTCTCCATCACCAGCT
TCGTCGGCTACGCGGCCGTCCTGAACGGCGGTGGCCCCGCCAACGTGTTG
GCCAACACCAAAAGCAGCCTGGTGGACCATGGTCTGGAAACGTGGATCAT
GGATTGGAAGGTCTGGCCCGCCGCCAACGTGATCATGTTTAGGACGCGCA
TCCAGCAGGTCCTCAAGAAGGTCGTGGTCGACCAGTTCGTGTACGCCCCG
TTCTCCATCACCAGCTTCGTCGGCTACGCGGCCGTCCTGAACGGCGGTGG
CCCCGCCAACGTGTTGGCCAACACCAAAAGCAGCCTGGTGGACCATGGTC
TGGAAACGTGGATCATGGATTGGAAGGTCTGGCCCGCCGCCAACGTGATC
ATGTTTAGGTTTATCCCGTCGTCCTACCGGCCATCTTTCGCCAGCCTGGT
CCAAGTGGCGTGGCAGGCTTACATGTCCAGCGTAAGCTACGACAACCCGT
CTCCCACCAAGGCTACCATCAAGGCAGGCAACAGCGGCGGGGTTTTTGTG
AGAGGAGGAGGAGGAGGGGGGCGGGCAGGGGTAGGGGCTACAGACGGGGT
CGCTGCGAATGGGACAGGGGGGGATGGGGTGCGAACCGGGGGAGGGGAAG
GAATCACCCCTTCCCCGGGGTTGCCTGTAGCGGTCGCCGCCATCGAAGGC
GGTACCGCGCGACGGGCGGTGATGGTCGATAGGCGTTCCACAGGGCGCTA
CGCGTACAATAGCACCTCTAGCAGCGCCGGGACAGCTCGTGATGGTGGTG
CTGGCTCCAGCTCTGGGGCCCTCAAAGACGACGGTAGCGTTAGTGGCGGC
GTTTATCCCGTCGTCCTACCGGCCATCTTTCGCCAGCCTGGTCCAAGTGG
CGTGGCAGGCTTACATGTCCAGCGTAAGCTACGACAACCCGTCTCCCACC
AAGGCTACCATCAAGGCAGGCAACAGCGGCGGGGTTTTTGTGAGAGGAGG
AGGAGGAGGGGGGCGGGCAGGGGTAGGGGCTACAGACGGGGTCGCTGCGA
ATGGGACAGGGGGGGATGGGGTGCGAACCGGGGGAGGGGAAGGAATCACC
CCTTCCCCGGGGTTGCCTGTAGCGGTCGCCGCCATCGAAGGCGGTACCGC
GCGACGGGCGGTGATGGTCGATAGGCGTTCCACAGGGCGCTACGCGTACA
ATAGCACCTCTAGCAGCGCCGGGACAGCTCGTGATGGTGGTGCTGGCTCC
AGCTCTGGGGCCCTCAAAGACGACGGTAGCGTTAGTGGCGGC
back to top