mRNA_C-linearis_contig9.16637.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16637.1
Unique NamemRNA_C-linearis_contig9.16637.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:2217903..2220908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1247
Cds size657
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16637.1prot_C-linearis_contig9.16637.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 2217903..2218559 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930706.6311707-CDS-C-linearis_contig9:2217902..22185591622930706.6311707-CDS-C-linearis_contig9:2217902..2218559Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2217903..2218559 -
1690881207.0896368-CDS-C-linearis_contig9:2217902..22185591690881207.0896368-CDS-C-linearis_contig9:2217902..2218559Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2217903..2218559 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930706.6486692-UTR-C-linearis_contig9:2218559..22189461622930706.6486692-UTR-C-linearis_contig9:2218559..2218946Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2218560..2218946 -
1690881207.0998397-UTR-C-linearis_contig9:2218559..22189461690881207.0998397-UTR-C-linearis_contig9:2218559..2218946Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2218560..2218946 -
1622930706.6696477-UTR-C-linearis_contig9:2220271..22204441622930706.6696477-UTR-C-linearis_contig9:2220271..2220444Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2220272..2220444 -
1690881207.1091528-UTR-C-linearis_contig9:2220271..22204441690881207.1091528-UTR-C-linearis_contig9:2220271..2220444Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2220272..2220444 -
1622930706.6872704-UTR-C-linearis_contig9:2220879..22209081622930706.6872704-UTR-C-linearis_contig9:2220879..2220908Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2220880..2220908 -
1690881207.1211321-UTR-C-linearis_contig9:2220879..22209081690881207.1211321-UTR-C-linearis_contig9:2220879..2220908Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2220880..2220908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16637.1

>prot_C-linearis_contig9.16637.1 ID=prot_C-linearis_contig9.16637.1|Name=mRNA_C-linearis_contig9.16637.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=219bp
MARLCEPGPDPSPCQPDQNPTVTAGLSPMTPGNSTVSSGSSAFAQTETGT
EVVGDVASVAVAAGAIVDAARGPAKNAEGGGWNGAMVGCASDRAVASGKG
GDCREEGAALSSNGAPNVAGAGAAAAAPANGGAGKDGGAAAAAAATESSP
SGTADSAATREAANSAAIVGAVAIGVYELSPDFSVAGPTKGLPTAPDTAV
GATGKGRAAAAAAAAAATT
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mRNA from alignment at C-linearis_contig9:2217903..2220908-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16637.1 ID=mRNA_C-linearis_contig9.16637.1|Name=mRNA_C-linearis_contig9.16637.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3006bp|location=Sequence derived from alignment at C-linearis_contig9:2217903..2220908- (Chordaria linearis ClinC8C monoicous)
GCCACTTCTCTCACAGCAATAGTGACCAGGTGAGGAAAACCACGCCAGTT
CAGGGTAGGATAAAGCTTCATACGGCGCCCTTTCTTGGTGAAATTTGTTG
ATACAACCGTCTTCAGCCCCTGCATATTGATTGTACATAAACCATTAATG
GTACTTCGTATGTAGCCCTTGGAGGCGTGCACGCCACGCTGCTCTCCCTT
TCAAGCACCCTCCCGTCGCCCTGTTGGTATCACTTGTTTCACATCTGGCT
GCCTCCACTCTGTGCACGTGGTTCCTTCCACCTTTTCGGGAGCATGGCGT
ACGTACTCAATCACAACAGCCGCAGCTCGCTCTCGGCCGTCTGTCTTCTT
CTGAGACCATGCGGACCGAACGCTTGGGTTCCACTCCATTTTTGAATCGT
CACACTCACGCGCTAGACATGGAGCCCTTTGCCTCTTTTCCTCGTCATGC
CCCGGCAACAACAGCAGCGCCGACACCGACACCAAACATTTGGAAGGAAG
TTAAGTAGAGTTAAACGGCAGCCGCTGAGAGAGTGCATCACGCACACAAG
GAAGTCAGGAAGGAGCCTGAGGAACGGAGAATACACAGCAGGGGATACAA
CCCAGAGAGCACCGCGTTGTGATGTCGTCCGTGTAAGGTAAGACAGGGGT
GGGGTAATGTTGCGAACAATGCTGCTGTCGGCGGTGCACGGCAGTAGCAG
GCGTTAGGTTTAGGATACAACTTGCCTCCATCATATCGTCCATAGTCTCT
ACAGCAGTAAATACCGTGGACACGCCGGAGTAGAGCAGAGGCAGGTCTAC
GAAGTTTGTTCTCGACAAGATGCAGGCTCAACAGTTTGCCCGGTTGCTCC
AACCCCCAGAGAGTATTGCCGAGGCCAAGTCAAGCTTTCAGCTTTTATCT
GCGCTCGTGCTCAAATTCCTATCTTGTAGCTGTTCCAAAATATCAGATTT
GAAGATTTGTCCGCAGATACTGCTATCGGTGTGGTACGTAGGTTTGGGTA
CGGGCCCATATGTGATGGCTGGAAGAGGCTTACAGCCCCATATTTGATGC
CTACAAGCCATATTATGGCGTCTGCTCCGGAAACAGCCCACATTAGATGT
CCACAAGCCTTTGTAGTTAAGGTGTCTGTTTCCGGAACAGCCCATATTTC
ACGTCTTGTTGTTGTTGTTGTCTTCAAATTAAAAACCATCCCGGTCTCGT
CTCTATCCAGTACCTCCTTCTGTCTCAACCTCTCCGTACTAATCCATCAC
TTGACGCGGCCAATTTCCGTGGTCACAAGCTAGCTTACCTAAAAAGGTAT
ACTGAAAATAAAACGGACCCCAAGGGTCAGCAGAGCGTCTACAAGCCATA
TTTAACGTGTCTGTTTCCGAAACAGCCCATATTTGATATCTGCAAGCCAT
ATTAATATTAAGGTGTCTCTTTCAGAAGCAGCTTGTTGATGAATGGTTTG
ACAAAGCTGAATATGTCAAATGCGCTTCGCGTGATGTACAGGAACTCTTA
TATTACCCACCCACGCAGGATCGTCGCCAACCAAGTTGATCATTGTCCAC
TACTACATTCAGTTGATGAATACCGGCAGTGGTTTTCGCCCCAACTCCGG
CATCGAAGTAACCCCAAATAACCCAGATAGTACCAGTATACATCTTCTAG
TGAAGCCAATTTGCTGCGTGTCGGTGTCCAACCCTACTATTATAGCTAGT
GTACTCTTCATGCAACAACCCAAAGATATCGCTTGCGAGAATGGAAACCC
GGCTGCACCGTAGAACCTCACCGTGAACACGGGGTAGCCATTCCTGCGAT
GGTGAACTTTACATCTCGGGTGCGCGAGAGATACACCGCGGATAGCAGCC
ACGTCCTGCCTTTCGGAAAAATACAACCCGTTTCCCCCCTTCTTGCTGCC
CCACTGCCGTTCCCTCGTGTTGTACATATCTCTCTCGCGCGTCTCCATGC
TCCCTCTGTCAGGGGCAGCGGCGGCGGGATTGGCGAGGCAGGACGTCTTT
GGCGCTTCAGAAATGGCTACGGGTCACACAACACTGCTGTCGGCTCACGG
AGACGGCACGGCAAGGGCAGGACTCGACTTTCGATTACACCAGCAGGAGC
AGCACCAACAACAGCAGCAACAAGTTGGGGCGGTGTTGCTACCACGAGGA
GGGCGGCTACCACCACGGCAGCAGCCACGAGGGCGGCAGCGATAGTTCCA
AAGCCCGGAGGAAAAGGGCAACACTTCTTTGGGGAGACTATAATAGCTAG
AAAGGTAAGGATAAAACCTCGCACCACCAGCAGCAAAAGCGGGAGCAGAA
GTCGTGGGAGAAAAAGGAGGCAGGAAAGTTTAAGTTTTAGCCCATCAACA
TGGCGAGGCTGTGCGAACCGGGGCCGGATCCGTCCCCATGCCAGCCCGAC
CAAAACCCGACGGTCACCGCAGGGCTGTCGCCCATGACCCCCGGCAACAG
CACCGTCAGCAGCGGCAGCAGCGCATTCGCCCAGACGGAGACGGGCACGG
AGGTTGTGGGAGACGTGGCGTCGGTGGCGGTGGCTGCAGGGGCGATTGTT
GATGCCGCCCGTGGGCCCGCGAAAAACGCGGAGGGTGGAGGATGGAACGG
GGCGATGGTGGGGTGTGCCAGCGACAGGGCTGTCGCCAGCGGCAAGGGGG
GCGACTGCCGCGAGGAAGGGGCGGCGTTGTCGTCGAACGGGGCGCCGAAC
GTAGCGGGAGCGGGAGCTGCAGCGGCGGCCCCAGCTAACGGTGGTGCTGG
CAAAGATGGAGGAGCCGCAGCAGCGGCAGCGGCAACAGAGTCGTCCCCAA
GCGGGACGGCCGACAGCGCTGCGACTCGCGAAGCCGCCAACTCCGCCGCC
ATCGTTGGAGCCGTTGCGATAGGTGTGTATGAGCTATCGCCGGACTTCTC
AGTGGCGGGGCCAACGAAAGGACTACCAACAGCTCCAGACACGGCTGTCG
GGGCGACGGGAAAGGGAAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACAACA
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Coding sequence (CDS) from alignment at C-linearis_contig9:2217903..2220908-

>mRNA_C-linearis_contig9.16637.1 ID=mRNA_C-linearis_contig9.16637.1|Name=mRNA_C-linearis_contig9.16637.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at C-linearis_contig9:2217903..2220908- (Chordaria linearis ClinC8C monoicous)
ATGGCGAGGCTGTGCGAACCGGGGCCGGATCCGTCCCCATGCCAGCCCGA
CCAAAACCCGACGGTCACCGCAGGGCTGTCGCCCATGACCCCCGGCAACA
GCACCGTCAGCAGCGGCAGCAGCGCATTCGCCCAGACGGAGACGGGCACG
GAGGTTGTGGGAGACGTGGCGTCGGTGGCGGTGGCTGCAGGGGCGATTGT
TGATGCCGCCCGTGGGCCCGCGAAAAACGCGGAGGGTGGAGGATGGAACG
GGGCGATGGTGGGGTGTGCCAGCGACAGGGCTGTCGCCAGCGGCAAGGGG
GGCGACTGCCGCGAGGAAGGGGCGGCGTTGTCGTCGAACGGGGCGCCGAA
CGTAGCGGGAGCGGGAGCTGCAGCGGCGGCCCCAGCTAACGGTGGTGCTG
GCAAAGATGGAGGAGCCGCAGCAGCGGCAGCGGCAACAGAGTCGTCCCCA
AGCGGGACGGCCGACAGCGCTGCGACTCGCGAAGCCGCCAACTCCGCCGC
CATCGTTGGAGCCGTTGCGATAGGTGTGTATGAGCTATCGCCGGACTTCT
CAGTGGCGGGGCCAACGAAAGGACTACCAACAGCTCCAGACACGGCTGTC
GGGGCGACGGGAAAGGGAAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AACAACAATGGCGAGGCTGTGCGAACCGGGGCCGGATCCGTCCCCATGCC
AGCCCGACCAAAACCCGACGGTCACCGCAGGGCTGTCGCCCATGACCCCC
GGCAACAGCACCGTCAGCAGCGGCAGCAGCGCATTCGCCCAGACGGAGAC
GGGCACGGAGGTTGTGGGAGACGTGGCGTCGGTGGCGGTGGCTGCAGGGG
CGATTGTTGATGCCGCCCGTGGGCCCGCGAAAAACGCGGAGGGTGGAGGA
TGGAACGGGGCGATGGTGGGGTGTGCCAGCGACAGGGCTGTCGCCAGCGG
CAAGGGGGGCGACTGCCGCGAGGAAGGGGCGGCGTTGTCGTCGAACGGGG
CGCCGAACGTAGCGGGAGCGGGAGCTGCAGCGGCGGCCCCAGCTAACGGT
GGTGCTGGCAAAGATGGAGGAGCCGCAGCAGCGGCAGCGGCAACAGAGTC
GTCCCCAAGCGGGACGGCCGACAGCGCTGCGACTCGCGAAGCCGCCAACT
CCGCCGCCATCGTTGGAGCCGTTGCGATAGGTGTGTATGAGCTATCGCCG
GACTTCTCAGTGGCGGGGCCAACGAAAGGACTACCAACAGCTCCAGACAC
GGCTGTCGGGGCGACGGGAAAGGGAAGGGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAACAACA
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