mRNA_C-linearis_contig9.16632.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16632.1
Unique NamemRNA_C-linearis_contig9.16632.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig9.16632.1 vs. uniprot
Match: A0A6H5L3S1_9PHAE (Methyltransf_25 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3S1_9PHAE)

HSP 1 Score: 428 bits (1101), Expect = 2.860e-141
Identity = 284/548 (51.82%), Postives = 330/548 (60.22%), Query Frame = 1
Query:    1 WALDLQEKLGEAAELCTAVLGSAPRNARAFYVRAAALRKQGKRKEAVEAACEAARLRPDLPALVLAAGSLLCREKGFAHALALYETALEENPDKAQYHLGAAAALRKLGRSEEATAALLKAATAASTSPAGGNPPDVQLRAQVQYKLGQHLRSTGDPASCALAAEAYGRCLELDPGHTLAEFWLSATRKLAAVGGGEGASGERKTGPLPDVSGPLS---ERTSKNP--PTAAPREYVVGLYNAYAETFDSHLQEALEYRTPAVIVESLAVLFPGRRYRRCLDLGCGTGLSGQAASSVCGENLVGVDLSPAMVGRAKEKRLYRRLLVGDVTETVERLCRESKSITPAEGWAGT---RRPGVWEVPAAPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXECXXXXXXXXXXXXXXAS-------------SSAG-ERGELVISCDVFGYIGSLRACFKAVHDLVTGI-GSLMAEPQ--------EPGAIFAFSAEAPPATITTKSKGGR-------AVGGSQPGYELQGTGRW 1530
            W    ++KL EAAELC+AVL SAPRNAR  Y+RA A ++ G+ KEA E AC+AARLRPDLP++ L AGSLLCR K F  ALA+YE AL+ +P   QYHLGAA+ALR+LGR + ATAA L AA+AA+++       DV  +AQVQYKLGQHLRS GD AS A AA+AY RCLELDPGH LA FWL ATRKLAA    E   G    G     SG  S   +   + P  P +APREYVVGLYN+YAETFDSHLQ ALEYRTP VIVE+L  LFP RR+ RCLDLGCGTGLSG+AASSVC   LVGVDLSPAMV RA+EKR+Y RLLVG+VTETV RL R S+S  P+E  AG+   RR   WEVPA  E                                              +                S             SS G + G+L++SCDVF YIG LRACF+AV  LV G   S  +E +        EP A+FAFSAEAPP+  T     G        A   S  GYELQGTGR+
Sbjct:   12 WQCLGEDKLDEAAELCSAVLRSAPRNARGLYLRAVASQRAGRPKEAAEDACQAARLRPDLPSVQLMAGSLLCRNKCFGRALAVYEKALDASPGNVQYHLGAASALRQLGRGDHATAAFLAAASAAASA-------DVGTQAQVQYKLGQHLRSMGDAASLAQAAQAYARCLELDPGHVLAAFWLPATRKLAASTLREAHDGVYVAG-----SGEASVAVDNAMETPATPASAPREYVVGLYNSYAETFDSHLQGALEYRTPTVIVENLRRLFPERRWDRCLDLGCGTGLSGRAASSVC-RRLVGVDLSPAMVRRAREKRVYHRLLVGEVTETVRRLSRRSES--PSEPGAGSSPRRRRARWEVPAMVEEEGGAAVAAMAVGGCGDGNGIDQMLPGTTVAEEASVEDVESPAAGSKRELAQPTEVTTLATLQSAPIETSSGTCGGTSSGGIDGGDLILSCDVFVYIGDLRACFEAVRGLVAGYQASAESETEAGRDPRREEPAAVFAFSAEAPPSEATDAGDSGGEKRTTADAADPSHRGYELQGTGRY 544          
BLAST of mRNA_C-linearis_contig9.16632.1 vs. uniprot
Match: D7FSS7_ECTSI (Methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS7_ECTSI)

HSP 1 Score: 425 bits (1093), Expect = 1.120e-140
Identity = 271/535 (50.65%), Postives = 316/535 (59.07%), Query Frame = 1
Query:    1 WALDLQEKLGEAAELCTAVLGSAPRNARAFYVRAAALRKQGKRKEAVEAACEAARLRPDLPALVLAAGSLLCREKGFAHALALYETALEENPDKAQYHLGAAAALRKLGRSEEATAALLKAATAASTSPAGGNPPDVQLRAQVQYKLGQHLRSTGDPASCALAAEAYGRCLELDPGHTLAEFWLSATRKLAAVGGGEGASGERKTGPLPDVSGPLSERTSKNPPTAAPREYVVGLYNAYAETFDSHLQEALEYRTPAVIVESLAVLFPGRRYRRCLDLGCGTGLSGQAASSVCGENLVGVDLSPAMVGRAKEKRLYRRLLVGDVTETVERLCRESKSITPAEGWAGTRRPGV-WEVPAAPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXECXXXXXXXXXXXXXXASSSAGER------GELVISCDVFGYIGSLRACFKAVHDLVTGIGSLMAEPQ----------EPGAIFAFSAEAPPATITTKSKGGR-------AVGGSQPGYELQGTGRWV 1533
            W    ++KL EAAELC+AVL SAPRNAR  Y+RA A ++ G+ KE  E AC+AARLRPDLP++ L AGSLLCR K F  ALA+YE AL+ +P   QYHLGAA+ALR+LGR ++ATAA L AA+AA+++       DV  +AQVQYKLGQHLRS GD    A AA+AY RCLELD GH LA FWL ATRKLAA    E   G    GP    +   +   +   P +APREYVVGLYN+YAETFDSHLQ ALEYRTP VIVE+L  LFPGRR+ RCLDLGCGTGLSG+AASSVC   LVGVDLSPAMV RA+EKR+Y RLLVG+VTETV RL   S+S +        R P   WEVPA  E                                              E               + S  G        G+L++SCDVF YIG LRACF+AV +LV G     AE +          +P A+FAFSAEAPP         G        A   S  GYELQGTGR V
Sbjct:   12 WQCLQEDKLDEAAELCSAVLRSAPRNARGLYLRAVASQRAGRPKEGAEDACQAARLRPDLPSVQLMAGSLLCRNKCFGRALAVYEKALDVSPGNVQYHLGAASALRQLGRGDQATAAFLTAASAAASA-------DVGTQAQVQYKLGQHLRSMGDAVYFAQAAQAYARCLELDRGHVLAAFWLPATRKLAASTLREPHDGGYVAGPGEGSAAVDNAMETPASPASAPREYVVGLYNSYAETFDSHLQGALEYRTPTVIVENLRRLFPGRRWDRCLDLGCGTGLSGRAASSVC-RRLVGVDLSPAMVLRAREKRVYHRLLVGEVTETVRRLSSRSESASEPGAGLSARHPRARWEVPAMAEEEGGAAVAAVAVGGCGDGGGTGQMLPGTTVAGEASVEDEGELVPPTEVATLATLPSAPIVTGSGSCGGSSSDGIGGGDLILSCDVFVYIGDLRACFEAVRELVAG-DQASAESETDAGRDPRREKPAAVFAFSAEAPPPEAADAGDSGAEKRTTADAANPSHRGYELQGTGRCV 537          
BLAST of mRNA_C-linearis_contig9.16632.1 vs. uniprot
Match: A0A835Z4Q9_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Q9_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.350e-25
Identity = 80/191 (41.88%), Postives = 104/191 (54.45%), Query Frame = 1
Query:  418 RAQVQYKLGQHLRSTGDPASCALAAEAYGRCLELDPGHTLAEFWLSATRKLAAVGGGEGASGERKTGPLPDVSGPLSERTSKNPPTAAPREYVVGLYNAYAETFDSHLQEALEYRTPAVIVESLAVLFPGRRYRRCLDLGCGTGLSGQAASSVCGENLVGVDLSPAMVGRAKEK--RLYRRLLVGDVTETV 984
            RA  Q+   QHLRS GD A    A   + R   LDP + LA FW S    +AA G G  ASG    G +P                A PREY+  LY+ YA  F+ HL + L+Y+T  ++VE+L    PGR + RC+DLGCGTGLSG  A     E+L GVDLS  M+ +A+ K   +Y RL+VG+  E +
Sbjct:   32 RALAQFA--QHLRSIGDHAQ---ALHEFERAAALDPANQLAAFWQS----VAAKGTGASASGG---GDVP----------------APPREYIEKLYDGYAAKFEEHLTKGLQYKTHELLVEALVKALPGRLWARCVDLGCGTGLSGVTARPHV-EHLTGVDLSKNMIAQARAKGTAVYNRLIVGECAEAL 193          
BLAST of mRNA_C-linearis_contig9.16632.1 vs. uniprot
Match: A0A7S4D6U5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6U5_HETAK)

HSP 1 Score: 104 bits (259), Expect = 4.910e-21
Identity = 71/203 (34.98%), Postives = 97/203 (47.78%), Query Frame = 1
Query:  424 QVQYKLGQHLRSTGDPASCALAAEAYGRCLELDPGHTLAEFWLSATRKLAAVGGGEGASGERKTGPLPDVSGPLSERTSKNPPTAAPREYVVGLYNAYAETFDSHLQEALEYRTPAVIVESLAVLFPGRRYRR----CLDLGCGTGLSGQAASSVCGENLVGVDLSPAMVGRAKEKRLYRRLLVGDVTETVERLCRESKSITP 1020
            ++ YK  ++LR+ GD      AAE + +CLEL P H+LAEFWL       AV                              P+  P  Y+  LYN YA  F+ HL + L Y+TP VI   L  +   R +       LDLGCGTGLSG  A  V   ++VGVDLS AM+  A++K +Y  + V DV   +     +S++  P
Sbjct:   33 ELHYKYAKYLRNKGDKDK---AAEHFRKCLELQPDHSLAEFWLGTFGGSDAV------------------------------PSKCPENYIKKLYNGYASKFEEHLVKDLRYQTPTVINALLQQVTEERGWNSTNNAALDLGCGTGLSG-LAFKVHARSMVGVDLSEAMIEEARKKDIYNEVHVADVLGFLREKLIQSENYNP 201          
BLAST of mRNA_C-linearis_contig9.16632.1 vs. uniprot
Match: A0A366FDZ0_9HYPH (Putative TPR repeat methyltransferase n=1 Tax=Roseiarcus fermentans TaxID=1473586 RepID=A0A366FDZ0_9HYPH)

HSP 1 Score: 102 bits (253), Expect = 2.150e-20
Identity = 76/206 (36.89%), Postives = 103/206 (50.00%), Query Frame = 1
Query:  400 PPDVQLR----AQVQYKLGQHLRSTGDPASCALAAEAYGRCLELDPGHTLAEFWLSATRKL-----AAVGGGEGASGERKTGPLPDVSGPLSERTSKNPPTAAPREYVVGLYNAYAETFDSHLQEALEYRTPAVIVESLAVLFPGRRYRRCLDLGCGTGLSGQAASSVCGENLVGVDLSPAMVGRAKEKRLYRRLLVGDVTETVER 990
            PPD  +     A  +Y  G+     GD  +   AA+ + + LE  PG   A F L+  R+      AAV    GA       P    S  L+   +   P   PR YV  L++ YA  F+ HL +AL YR PA+IVE+L  + PGRR+   +DLGCG+GL G A     G  L GVDL+P+MV RA+E   Y  +   D  E ++R
Sbjct:    2 PPDTLVSQDPIADRRYVYGKGAADDGDFRT---AADLFEQALEQAPGWPAALFALAEARERLGERDAAVAAFRGALAADPGDPF-GASARLALIGATAQPDGLPRAYVTRLFDDYAPRFERHLLDALGYRAPALIVEALDAVAPGRRFASAIDLGCGSGLMGAAIRGRVGR-LDGVDLAPSMVARAREIGAYDAVETADAVERLDR 202          
BLAST of mRNA_C-linearis_contig9.16632.1 vs. uniprot
Match: A0A4R6R9E0_9HYPH (Putative TPR repeat methyltransferase n=2 Tax=Oharaeibacter diazotrophicus TaxID=1920512 RepID=A0A4R6R9E0_9HYPH)

HSP 1 Score: 99.4 bits (246), Expect = 1.850e-19
Identity = 75/192 (39.06%), Postives = 97/192 (50.52%), Query Frame = 1
Query:  415 LRAQVQYKLGQHLRSTGDPASCALAAEAYGRCLELDPGHTLAEFWLSATRKLAAVGGGEGASGERKTGPLP-DVSGP---LSERTSKNPPTAAPREYVVGLYNAYAETFDSHLQEALEYRTPAVIVESLAVLFPGRRYRRCLDLGCGTGLSGQAASSVCGENLVGVDLSPAMVGRAKEKRLYRRLLVGDVTE 978
            L A  +Y+  +   + GD A+   AA+ Y + LE  P    A   L   R  A       A+  R     P DV G    L+   +   P A P  YV GL++ YA+ FD  L E L YRTP  +   LA + P  R+ R LDLGCGTGL+G A      + L GVDLSPAMV +A++K  Y  L VGDV +
Sbjct:    9 LVADRRYEWARGYAAAGDHAA---AADLYAQALEAAPDWLPALVGLGEARAAAGEADAAAAAFRRALALDPADVHGAGLKLAALGAAAAPAAPPAAYVRGLFDGYADRFDRALVEDLGYRTPWRLGALLAAVRPDARFARVLDLGCGTGLTG-AVLRPAADRLEGVDLSPAMVAKARDKGDYDALAVGDVVD 196          
BLAST of mRNA_C-linearis_contig9.16632.1 vs. uniprot
Match: A0A6N6MKB1_9HYPH (Methyltransferase domain-containing protein n=1 Tax=Methylobacterium sp. YIM 132548 TaxID=2615211 RepID=A0A6N6MKB1_9HYPH)

HSP 1 Score: 98.6 bits (244), Expect = 4.340e-19
Identity = 71/176 (40.34%), Postives = 92/176 (52.27%), Query Frame = 1
Query:  454 RSTGDPASCALAAEAYGRCLELDPGHTLAEFWLSATRKLAAVGGGEGASGERKTGPLPDVSGPLSERTSKNPPTAAPREYVVGLYNAYAETFDSHLQEALEYRTPAVIVESLAVLFPGR--RYRRCLDLGCGTGLSGQAASSVCGENLVGVDLSPAMVGRAKEKRLYRRLLVGDVT 975
            R++G  A    A  AY   L+LDP        L +  +L  +GGGE A             G LS              YV  L++ YA  FD HL E L YR P ++ ++L  L PG   RY   LDLGCGTGL G A +   G +L GVDLSPAM+ +A+ +RLY+RL+VGD+T
Sbjct:   66 RASGGEADFHAALRAYSAALDLDPDDA-----LGSRVRLVQLGGGEAA-------------GALSPA------------YVRALFDGYAARFDRHLVEGLHYRGPEMLRDALEAL-PGAPARYAVALDLGCGTGLVGAAFAGRVG-HLTGVDLSPAMLAQAERRRLYQRLVVGDLT 209          
BLAST of mRNA_C-linearis_contig9.16632.1 vs. uniprot
Match: A0A850SR75_9PROT (Methyltransferase domain-containing protein n=1 Tax=Parvularculaceae bacterium TaxID=2510335 RepID=A0A850SR75_9PROT)

HSP 1 Score: 97.8 bits (242), Expect = 5.970e-19
Identity = 79/195 (40.51%), Postives = 99/195 (50.77%), Query Frame = 1
Query:  415 LRAQVQYKLGQHLRSTGDPASCALAAEAYGRCLELDPGHTLAEFWLSATRKLAAVGGGEGASGERKTGPLPD-VSGPLSE--RTSKNPPTAAPREYVVGLYNAYAETFDSHLQEALEYRTPAVIVESLAVLFPGRRYRRCLDLGCGTGLSGQAASSVCGENLVGVDLSPAMVGRAKEKRLYRRLLVGDVTETVER 990
            L A  +Y  G+     GD  S   AA+ + + LEL PG T A F L   R+ A   G   A+  R     PD V G   E  R       AAP  YV  L++AYA+ FD  L   L YR P ++  +LA     RR+ R LDLGCGTGLSG AA     + L GVDLS AM+ RA+ K +Y  LL     E ++R
Sbjct:   11 LLADRRYAYGEASAKAGDLVS---AADLFEQALELAPGWTDAWFALGLARRDAGQPGRARAAFARCLALDPDDVLGAGLELARLGVGTLAAAPPAYVAALFDAYADDFDDALAGRLGYRAPQLVAAALA----DRRFARVLDLGCGTGLSG-AALRPLSDYLEGVDLSDAMLARARSKEVYDALLRASFEERLDR 197          
BLAST of mRNA_C-linearis_contig9.16632.1 vs. uniprot
Match: UPI00166D480D (methyltransferase domain-containing protein n=1 Tax=Brucella endophytica TaxID=1963359 RepID=UPI00166D480D)

HSP 1 Score: 97.4 bits (241), Expect = 8.530e-19
Identity = 69/182 (37.91%), Postives = 97/182 (53.30%), Query Frame = 1
Query:  433 YKLGQHLRSTGDPASCALAAEAYGRCLELDPGHTLAEFWLSATRKLAAVGGGEGASGERKTGPLPDVSGPLSERTSKNPPTAAPREYVVGLYNAYAETFDSHLQEALEYRTPAVIVESLAVLFPGRRYRRCLDLGCGTGLSGQAASSVCGENLVGVDLSPAMVGRAKEKRLYRRLLVGDVTE 978
            ++LG+     G P +   AA+A+   LE DP     E    A+ KLA++G                    L+ R     P A P  YV  L++AYA TF++ L E L+YR P ++ E++A     RRYRR +DLGCGTGL G+   +   + L G+DLS AM+ +A+EK +Y RL  GDV E
Sbjct:   51 FRLGEMEEEAGHPEA---AAKAWRSVLEADP-----EDRFGASLKLASIG--------------------LAAR-----PDAPPTAYVETLFDAYAPTFETALIEKLDYRVPELLAEAIARA-GNRRYRRAMDLGCGTGLMGERLRATT-DYLEGIDLSDAMLRKAEEKGIYDRLEKGDVNE 197          
BLAST of mRNA_C-linearis_contig9.16632.1 vs. uniprot
Match: A0A7V7TVB9_9HYPH (Methyltransferase domain-containing protein n=1 Tax=Aureimonas leprariae TaxID=2615207 RepID=A0A7V7TVB9_9HYPH)

HSP 1 Score: 97.1 bits (240), Expect = 1.160e-18
Identity = 64/178 (35.96%), Postives = 87/178 (48.88%), Query Frame = 1
Query:  439 LGQHLRSTGDPASCALAAEAYGRCLELDPGHTLAEFWLSATRKLAAVGGGEGASGERKTGPLPDVSGPLSERTSKNPPTAAPREYVVGLYNAYAETFDSHLQEALEYRTPAVIVESLAVLFPGRRYRRCLDLGCGTGLSGQAASSVCGENLVGVDLSPAMVGRAKEKRLYRRLLVGDV 972
            LG++L  +G+P +   AAEA  R   LDP          A  +LAA+G                             P A P  +V  L++ YAE F++HL   L YR P +++ ++    P RR+   LDLGCGTGL G+   S C E L GVDLS AM+ +A+ K LY  L  GD+
Sbjct:   53 LGEYLEQSGEPGA---AAEALSRAAALDPADA-----SGAGARLAAMGRAPA-------------------------PAALPPAFVATLFDQYAERFEAHLTRKLAYRAPDLLLRAIRNAAPDRRFEAALDLGCGTGLMGEKLRSSC-ERLDGVDLSSAMLAKARAKNLYDALREGDI 196          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3S1_9PHAE2.860e-14151.82Methyltransf_25 domain-containing protein n=1 Tax=... [more]
D7FSS7_ECTSI1.120e-14050.65Methyltransferase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835Z4Q9_9STRA4.350e-2541.88S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S4D6U5_HETAK4.910e-2134.98Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A366FDZ0_9HYPH2.150e-2036.89Putative TPR repeat methyltransferase n=1 Tax=Rose... [more]
A0A4R6R9E0_9HYPH1.850e-1939.06Putative TPR repeat methyltransferase n=2 Tax=Ohar... [more]
A0A6N6MKB1_9HYPH4.340e-1940.34Methyltransferase domain-containing protein n=1 Ta... [more]
A0A850SR75_9PROT5.970e-1940.51Methyltransferase domain-containing protein n=1 Ta... [more]
UPI00166D480D8.530e-1937.91methyltransferase domain-containing protein n=1 Ta... [more]
A0A7V7TVB9_9HYPH1.160e-1835.96Methyltransferase domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:2170856..2173444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score93.6
Seed ortholog evalue2.9e-16
Seed eggNOG ortholog1123229.AUBC01000007_gene115
Preferred nameMA20_22060
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Methyltransferase domain
EggNOG OGs1RAIT@1224,2U5NY@28211,3JQXQ@41294,COG4976@1,COG4976@2
COG Functional cat.S
Best tax levelBradyrhizobiaceae
Best eggNOG OGNA|NA|NA
Exons4
Model size1533
Cds size1533
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16632.1prot_C-linearis_contig9.16632.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 2170856..2173444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930745.6857305-CDS-C-linearis_contig9:2170855..21711561622930745.6857305-CDS-C-linearis_contig9:2170855..2171156Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2170856..2171156 +
1690881227.647628-CDS-C-linearis_contig9:2170855..21711561690881227.647628-CDS-C-linearis_contig9:2170855..2171156Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2170856..2171156 +
1622930745.7022018-CDS-C-linearis_contig9:2171411..21717441622930745.7022018-CDS-C-linearis_contig9:2171411..2171744Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2171412..2171744 +
1690881227.6711695-CDS-C-linearis_contig9:2171411..21717441690881227.6711695-CDS-C-linearis_contig9:2171411..2171744Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2171412..2171744 +
1622930745.7193718-CDS-C-linearis_contig9:2172239..21724171622930745.7193718-CDS-C-linearis_contig9:2172239..2172417Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2172240..2172417 +
1690881227.683067-CDS-C-linearis_contig9:2172239..21724171690881227.683067-CDS-C-linearis_contig9:2172239..2172417Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2172240..2172417 +
1622930745.736434-CDS-C-linearis_contig9:2172723..21734441622930745.736434-CDS-C-linearis_contig9:2172723..2173444Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2172724..2173444 +
1690881227.6934025-CDS-C-linearis_contig9:2172723..21734441690881227.6934025-CDS-C-linearis_contig9:2172723..2173444Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2172724..2173444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16632.1

>prot_C-linearis_contig9.16632.1 ID=prot_C-linearis_contig9.16632.1|Name=mRNA_C-linearis_contig9.16632.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=511bp
WALDLQEKLGEAAELCTAVLGSAPRNARAFYVRAAALRKQGKRKEAVEAA
CEAARLRPDLPALVLAAGSLLCREKGFAHALALYETALEENPDKAQYHLG
AAAALRKLGRSEEATAALLKAATAASTSPAGGNPPDVQLRAQVQYKLGQH
LRSTGDPASCALAAEAYGRCLELDPGHTLAEFWLSATRKLAAVGGGEGAS
GERKTGPLPDVSGPLSERTSKNPPTAAPREYVVGLYNAYAETFDSHLQEA
LEYRTPAVIVESLAVLFPGRRYRRCLDLGCGTGLSGQAASSVCGENLVGV
DLSPAMVGRAKEKRLYRRLLVGDVTETVERLCRESKSITPAEGWAGTRRP
GVWEVPAAPEEEGGAAAATTAVTGDDEGEALRIAGPPAAAAAAAVGGSNS
AAKLASECVSTPPHGGRSSRRGASSSAGERGELVISCDVFGYIGSLRACF
KAVHDLVTGIGSLMAEPQEPGAIFAFSAEAPPATITTKSKGGRAVGGSQP
GYELQGTGRWV
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mRNA from alignment at C-linearis_contig9:2170856..2173444+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16632.1 ID=mRNA_C-linearis_contig9.16632.1|Name=mRNA_C-linearis_contig9.16632.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2589bp|location=Sequence derived from alignment at C-linearis_contig9:2170856..2173444+ (Chordaria linearis ClinC8C monoicous)
TGGGCGCTCGACCTACAGGAGAAGCTAGGAGAAGCGGCGGAGCTCTGCAC GGCCGTCCTCGGCAGCGCTCCCCGAAACGCGCGCGCTTTCTACGTTCGCG CGGCCGCGCTGCGAAAACAGGGAAAGAGAAAAGAGGCCGTGGAGGCCGCT TGCGAGGCCGCCCGCCTTCGCCCGGACCTCCCGGCGCTCGTGCTGGCGGC TGGATCTTTGCTGTGTCGGGAGAAGGGCTTCGCTCACGCCCTGGCGCTGT ACGAAACGGCGCTGGAGGAAAATCCCGACAAGGCGCAGTACCATCTGGGA GGTGAGCGGTGCTTTTTTAGAGGCAAGGGCATACCACCGCTTAAGGTTGG GCCAGTTGCGTATGGTAATTTTAACGCGACAGCAGTATCCCTTGAGTGCA GATAGGCGTTCGTATTCACACACCGCAGAACCCCGGGGCTGCGCACGCGC ACAGGTTGCAAGCGACGTTCGTCGTCGCTGAAAAACAGCAGCACTAGTGA CTTCAATCGTGCCCCCCACCTCCTCCTCGGAATCCCATCTCACACCGCCG ACCCAGCTGCTGCTGCGCTGAGAAAGCTCGGCCGCAGCGAAGAGGCCACC GCAGCCCTTCTCAAAGCAGCGACGGCTGCCTCCACCTCCCCGGCCGGCGG CAACCCTCCCGATGTACAACTACGAGCCCAGGTGCAGTACAAGCTCGGCC AGCACCTGCGCTCCACGGGGGATCCGGCGTCCTGTGCGCTTGCCGCCGAG GCTTACGGCCGCTGCTTGGAGCTCGATCCCGGCCACACCCTGGCGGAGTT TTGGCTTTCGGCGACGAGGAAGCTTGCGGCTGTGGGAGGGGGGGAAGGCG CGTCTGGTGAGCGCAAAACAGGGCCGTTGCCTGATGTATGTAGGGTACAG GTTTAGGCCATTTATAAAGGGCCGCGCTGTAGTGTGGTGGCTGCGGGGCG AGGCGATCGTCGGTTCATCTTTTTGTGACACGAGAGGAAATTCAGCAAGC AGTGTTCTGGCTTGGCTGCGTCCCTGGATTGTTGCGCCGTAGTTTTGGCG TGACGCTAAGGGTGCCTGTGCTTCCGTCGGGTACACCTTTCTTTGGTTCG AAGAGAGATCAACGGGCCAGCTAGATGTACGGGTACTTCTTGTTTCGCTG TTGTTTTTAGTTGTGGTTGCTGTCGTGGGTCCCGCAACAGATATGCCAGC CGTCAGTATAGACTTTTTGTTGTCCCACTCGCTTTGGGCAGAACAATCCC AACGGGCACACACACACACACACACACACCATAATTTCCTGCTGTGTTCC GCTTGCTGTTCACACCTCCGGCGCAAAAAGCTGCATCCGGCCAAAACGGG AATGCTGGTGGCTGTACCGACAACGCCGTTGGAGCGGGTCCCCTCTCCGA ACGAACGTCCAAGAATCCTCCCACGGCGGCGCCGCGCGAGTACGTCGTCG GTCTGTACAACGCTTATGCCGAGACGTTCGACTCGCACCTGCAGGAGGCG CTGGAGTACCGCACGCCGGCCGTCATCGTGGAGAGCCTGGCAGTCCTGTT TCCGGGGAGAAGGTGAAGAGAGGCCAGACATGCACGCACGCAGCTCTCTC TGCCCGATGGTAAACTATGATGTATTTTCATGGAGGACGGGAAAGTCGAG GGAGATTTTTTTAATTGGTCGCACCGAGAGATAGTTTCGTCCATGACGCA TGGTCGTTTGACTCCTATTTTTTGCGTGGGATTTGCGTGGAGGTTTCGGA GCAATCCCCTCCCCCTGCGCGCACGCACGCACGTTACATACCCTCTTCCA CCTACCTGCCCGCTGCCGTCGATGCCTAATTACCTCGTTTTTTCTTTTAC GCGTGCTGCGATCAACAGATATAGACGGTGCCTCGACCTCGGGTGCGGCA CGGGGCTGTCCGGGCAAGCCGCGTCCTCCGTCTGCGGCGAAAACCTGGTC GGGGTCGATCTCAGCCCGGCCATGGTCGGCAGAGCGAAGGAGAAGCGCCT GTACCGCCGGCTCCTGGTCGGCGACGTGACCGAGACGGTGGAGCGCCTCT GCCGCGAGTCGAAAAGCATCACGCCTGCGGAGGGTTGGGCTGGAACCAGA CGCCCGGGGGTTTGGGAGGTGCCGGCGGCGCCTGAGGAAGAGGGGGGTGC CGCGGCGGCGACTACTGCTGTAACGGGTGATGATGAAGGAGAAGCATTGC GGATAGCAGGACCACCAGCAGCAGCAGCGGCAGCAGCCGTGGGAGGAAGC AATAGTGCGGCAAAGCTGGCATCGGAGTGCGTTTCTACGCCACCACATGG CGGGAGAAGCAGCAGGCGCGGCGCCAGCAGTAGCGCAGGGGAGCGAGGGG AGCTGGTCATCTCCTGCGACGTGTTCGGTTACATCGGCAGCCTCCGAGCC TGTTTCAAGGCCGTGCACGACCTAGTCACGGGCATCGGTTCCTTGATGGC CGAGCCGCAAGAACCCGGCGCTATCTTCGCCTTCTCGGCGGAAGCACCAC CGGCGACAATTACGACCAAGAGCAAGGGCGGGCGTGCTGTTGGCGGAAGT CAGCCGGGATACGAGCTTCAGGGCACTGGCAGGTGGGTC
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Coding sequence (CDS) from alignment at C-linearis_contig9:2170856..2173444+

>mRNA_C-linearis_contig9.16632.1 ID=mRNA_C-linearis_contig9.16632.1|Name=mRNA_C-linearis_contig9.16632.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3066bp|location=Sequence derived from alignment at C-linearis_contig9:2170856..2173444+ (Chordaria linearis ClinC8C monoicous)
TGGGCGCTCGACCTACAGGAGAAGCTAGGAGAAGCGGCGGAGCTCTGCAC
GGCCGTCCTCGGCAGCGCTCCCCGAAACGCGCGCGCTTTCTACGTTCGCG
CGGCCGCGCTGCGAAAACAGGGAAAGAGAAAAGAGGCCGTGGAGGCCGCT
TGCGAGGCCGCCCGCCTTCGCCCGGACCTCCCGGCGCTCGTGCTGGCGGC
TGGATCTTTGCTGTGTCGGGAGAAGGGCTTCGCTCACGCCCTGGCGCTGT
ACGAAACGGCGCTGGAGGAAAATCCCGACAAGGCGCAGTACCATCTGGGA
GTGGGCGCTCGACCTACAGGAGAAGCTAGGAGAAGCGGCGGAGCTCTGCA
CGGCCGTCCTCGGCAGCGCTCCCCGAAACGCGCGCGCTTTCTACGTTCGC
GCGGCCGCGCTGCGAAAACAGGGAAAGAGAAAAGAGGCCGTGGAGGCCGC
TTGCGAGGCCGCCCGCCTTCGCCCGGACCTCCCGGCGCTCGTGCTGGCGG
CTGGATCTTTGCTGTGTCGGGAGAAGGGCTTCGCTCACGCCCTGGCGCTG
TACGAAACGGCGCTGGAGGAAAATCCCGACAAGGCGCAGTACCATCTGGG
AGCTGCTGCTGCGCTGAGAAAGCTCGGCCGCAGCGAAGAGGCCACCGCAG
CCCTTCTCAAAGCAGCGACGGCTGCCTCCACCTCCCCGGCCGGCGGCAAC
CCTCCCGATGTACAACTACGAGCCCAGGTGCAGTACAAGCTCGGCCAGCA
CCTGCGCTCCACGGGGGATCCGGCGTCCTGTGCGCTTGCCGCCGAGGCTT
ACGGCCGCTGCTTGGAGCTCGATCCCGGCCACACCCTGGCGGAGTTTTGG
CTTTCGGCGACGAGGAAGCTTGCGGCTGTGGGAGGGGGGGAAGGCGCGTC
TGGTGAGCGCAAAACAGGGCCGTTGCCTGATGTATCTGCTGCTGCGCTGA
GAAAGCTCGGCCGCAGCGAAGAGGCCACCGCAGCCCTTCTCAAAGCAGCG
ACGGCTGCCTCCACCTCCCCGGCCGGCGGCAACCCTCCCGATGTACAACT
ACGAGCCCAGGTGCAGTACAAGCTCGGCCAGCACCTGCGCTCCACGGGGG
ATCCGGCGTCCTGTGCGCTTGCCGCCGAGGCTTACGGCCGCTGCTTGGAG
CTCGATCCCGGCCACACCCTGGCGGAGTTTTGGCTTTCGGCGACGAGGAA
GCTTGCGGCTGTGGGAGGGGGGGAAGGCGCGTCTGGTGAGCGCAAAACAG
GGCCGTTGCCTGATGTATCGGGTCCCCTCTCCGAACGAACGTCCAAGAAT
CCTCCCACGGCGGCGCCGCGCGAGTACGTCGTCGGTCTGTACAACGCTTA
TGCCGAGACGTTCGACTCGCACCTGCAGGAGGCGCTGGAGTACCGCACGC
CGGCCGTCATCGTGGAGAGCCTGGCAGTCCTGTTTCCGGGGAGAAGCGGG
TCCCCTCTCCGAACGAACGTCCAAGAATCCTCCCACGGCGGCGCCGCGCG
AGTACGTCGTCGGTCTGTACAACGCTTATGCCGAGACGTTCGACTCGCAC
CTGCAGGAGGCGCTGGAGTACCGCACGCCGGCCGTCATCGTGGAGAGCCT
GGCAGTCCTGTTTCCGGGGAGAAGATATAGACGGTGCCTCGACCTCGGGT
GCGGCACGGGGCTGTCCGGGCAAGCCGCGTCCTCCGTCTGCGGCGAAAAC
CTGGTCGGGGTCGATCTCAGCCCGGCCATGGTCGGCAGAGCGAAGGAGAA
GCGCCTGTACCGCCGGCTCCTGGTCGGCGACGTGACCGAGACGGTGGAGC
GCCTCTGCCGCGAGTCGAAAAGCATCACGCCTGCGGAGGGTTGGGCTGGA
ACCAGACGCCCGGGGGTTTGGGAGGTGCCGGCGGCGCCTGAGGAAGAGGG
GGGTGCCGCGGCGGCGACTACTGCTGTAACGGGTGATGATGAAGGAGAAG
CATTGCGGATAGCAGGACCACCAGCAGCAGCAGCGGCAGCAGCCGTGGGA
GGAAGCAATAGTGCGGCAAAGCTGGCATCGGAGTGCGTTTCTACGCCACC
ACATGGCGGGAGAAGCAGCAGGCGCGGCGCCAGCAGTAGCGCAGGGGAGC
GAGGGGAGCTGGTCATCTCCTGCGACGTGTTCGGTTACATCGGCAGCCTC
CGAGCCTGTTTCAAGGCCGTGCACGACCTAGTCACGGGCATCGGTTCCTT
GATGGCCGAGCCGCAAGAACCCGGCGCTATCTTCGCCTTCTCGGCGGAAG
CACCACCGGCGACAATTACGACCAAGAGCAAGGGCGGGCGTGCTGTTGGC
GGAAGTCAGCCGGGATACGAGCTTCAGGGCACTGGCAGGTGGGTCATATA
GACGGTGCCTCGACCTCGGGTGCGGCACGGGGCTGTCCGGGCAAGCCGCG
TCCTCCGTCTGCGGCGAAAACCTGGTCGGGGTCGATCTCAGCCCGGCCAT
GGTCGGCAGAGCGAAGGAGAAGCGCCTGTACCGCCGGCTCCTGGTCGGCG
ACGTGACCGAGACGGTGGAGCGCCTCTGCCGCGAGTCGAAAAGCATCACG
CCTGCGGAGGGTTGGGCTGGAACCAGACGCCCGGGGGTTTGGGAGGTGCC
GGCGGCGCCTGAGGAAGAGGGGGGTGCCGCGGCGGCGACTACTGCTGTAA
CGGGTGATGATGAAGGAGAAGCATTGCGGATAGCAGGACCACCAGCAGCA
GCAGCGGCAGCAGCCGTGGGAGGAAGCAATAGTGCGGCAAAGCTGGCATC
GGAGTGCGTTTCTACGCCACCACATGGCGGGAGAAGCAGCAGGCGCGGCG
CCAGCAGTAGCGCAGGGGAGCGAGGGGAGCTGGTCATCTCCTGCGACGTG
TTCGGTTACATCGGCAGCCTCCGAGCCTGTTTCAAGGCCGTGCACGACCT
AGTCACGGGCATCGGTTCCTTGATGGCCGAGCCGCAAGAACCCGGCGCTA
TCTTCGCCTTCTCGGCGGAAGCACCACCGGCGACAATTACGACCAAGAGC
AAGGGCGGGCGTGCTGTTGGCGGAAGTCAGCCGGGATACGAGCTTCAGGG
CACTGGCAGGTGGGTC
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