mRNA_C-linearis_contig9.16631.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16631.1
Unique NamemRNA_C-linearis_contig9.16631.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:2165738..2166809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1073
Cds size651
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930706.5643833-UTR-C-linearis_contig9:2165737..21661581622930706.5643833-UTR-C-linearis_contig9:2165737..2166158Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2165738..2166158 +
1690881207.067938-UTR-C-linearis_contig9:2165737..21661581690881207.067938-UTR-C-linearis_contig9:2165737..2166158Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2165738..2166158 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930706.580294-CDS-C-linearis_contig9:2166158..21668091622930706.580294-CDS-C-linearis_contig9:2166158..2166809Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2166159..2166809 +
1690881207.0790446-CDS-C-linearis_contig9:2166158..21668091690881207.0790446-CDS-C-linearis_contig9:2166158..2166809Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2166159..2166809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16631.1prot_C-linearis_contig9.16631.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 2166159..2166809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16631.1

>prot_C-linearis_contig9.16631.1 ID=prot_C-linearis_contig9.16631.1|Name=mRNA_C-linearis_contig9.16631.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=217bp
MIERLQKTASVKETYLWRRKPYKIPKSIGTTRDIKLVYQHTPSTTAAANQ
TRAVAPAPGRTVAVPLKELAKVLSRFPTKLVSEEGPETGAASAAEADDND
DVDALAVPELLLVAAPSSVAVVPDEDSDELSSTVEIAGDGVYSGLLEALE
LAVVLFSRVGAGVMAPLRDGVEGTPVAKIGAPEGMAVGGESVLSTGATVP
AAAVENVWAGPWVRIPG
back to top

mRNA from alignment at C-linearis_contig9:2165738..2166809+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16631.1 ID=mRNA_C-linearis_contig9.16631.1|Name=mRNA_C-linearis_contig9.16631.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1072bp|location=Sequence derived from alignment at C-linearis_contig9:2165738..2166809+ (Chordaria linearis ClinC8C monoicous)
TCCCTCAAAATTCAAACACACATACAGCATGTGCATATTATTTTCCACAC
GATAATACAGCCTGACCAAAAGAACATCAGGGATAATAACATTCTTCACG
AATCGAAGATAAATAAGTAGTCTCCCGAAACAGACAATAAAAGAATTCAG
GCCTCGGACATGGCAAACTAAGAGTTCGAGTACTGAAGACAGGCACTCCC
AGTCTCAATTCCTCCAACAGGACGGTATGTGACCACCACTAGGCAGCAAA
ATAGCTTGAACCTGCTCATCGATCGGCTCGGCACTGTGCTGAACCAAAAT
TATTTCAATATTTTCCTCGCGCAGCGTATCTCGCGACTCGGGCAGATTGT
ACATTCAAAAAACAAAAAAGACTCCATACCCTAAACAAACGGGGAGCTAA
ATCATATCCCTCAAGCAAGTCATGATAGAACGGCTACAAAAAACGGCTTC
TGTGAAGGAAACGTATCTATGGCGTAGGAAGCCCTACAAAATTCCCAAAT
CAATCGGCACCACCCGAGACATAAAACTGGTCTACCAGCACACACCCAGC
ACGACGGCGGCAGCAAACCAAACCAGGGCAGTGGCTCCGGCCCCAGGCCG
GACTGTCGCTGTCCCGCTCAAGGAGTTGGCAAAAGTTCTGTCGAGATTCC
CTACAAAGCTAGTCTCAGAGGAGGGGCCGGAAACGGGCGCAGCATCCGCC
GCTGAGGCCGACGACAACGACGACGTTGACGCGCTTGCCGTCCCCGAACT
ACTCCTCGTCGCCGCGCCATCCTCCGTGGCGGTGGTGCCTGATGAGGACA
GTGATGAATTGTCGTCAACGGTAGAAATCGCCGGAGACGGGGTATACTCC
GGGCTGCTGGAGGCGCTTGAGCTGGCAGTAGTCCTGTTCAGCAGGGTAGG
CGCCGGGGTCATGGCACCACTTAGGGACGGTGTAGAAGGCACCCCCGTGG
CGAAAATTGGTGCCCCAGAAGGCATGGCGGTCGGTGGAGAGAGCGTGTTG
TCCACAGGAGCAACCGTGCCTGCAGCAGCTGTAGAAAATGTTTGGGCAGG
TCCCTGGGTCAGAATTCCTGGT
back to top

Coding sequence (CDS) from alignment at C-linearis_contig9:2165738..2166809+

>mRNA_C-linearis_contig9.16631.1 ID=mRNA_C-linearis_contig9.16631.1|Name=mRNA_C-linearis_contig9.16631.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at C-linearis_contig9:2165738..2166809+ (Chordaria linearis ClinC8C monoicous)
ATGATAGAACGGCTACAAAAAACGGCTTCTGTGAAGGAAACGTATCTATG
GCGTAGGAAGCCCTACAAAATTCCCAAATCAATCGGCACCACCCGAGACA
TAAAACTGGTCTACCAGCACACACCCAGCACGACGGCGGCAGCAAACCAA
ACCAGGGCAGTGGCTCCGGCCCCAGGCCGGACTGTCGCTGTCCCGCTCAA
GGAGTTGGCAAAAGTTCTGTCGAGATTCCCTACAAAGCTAGTCTCAGAGG
AGGGGCCGGAAACGGGCGCAGCATCCGCCGCTGAGGCCGACGACAACGAC
GACGTTGACGCGCTTGCCGTCCCCGAACTACTCCTCGTCGCCGCGCCATC
CTCCGTGGCGGTGGTGCCTGATGAGGACAGTGATGAATTGTCGTCAACGG
TAGAAATCGCCGGAGACGGGGTATACTCCGGGCTGCTGGAGGCGCTTGAG
CTGGCAGTAGTCCTGTTCAGCAGGGTAGGCGCCGGGGTCATGGCACCACT
TAGGGACGGTGTAGAAGGCACCCCCGTGGCGAAAATTGGTGCCCCAGAAG
GCATGGCGGTCGGTGGAGAGAGCGTGTTGTCCACAGGAGCAACCGTGCCT
GCAGCAGCTGTAGAAAATGTTTGGGCAGGTCCCTGGGTCAGAATTCCTGG
TATGATAGAACGGCTACAAAAAACGGCTTCTGTGAAGGAAACGTATCTAT
GGCGTAGGAAGCCCTACAAAATTCCCAAATCAATCGGCACCACCCGAGAC
ATAAAACTGGTCTACCAGCACACACCCAGCACGACGGCGGCAGCAAACCA
AACCAGGGCAGTGGCTCCGGCCCCAGGCCGGACTGTCGCTGTCCCGCTCA
AGGAGTTGGCAAAAGTTCTGTCGAGATTCCCTACAAAGCTAGTCTCAGAG
GAGGGGCCGGAAACGGGCGCAGCATCCGCCGCTGAGGCCGACGACAACGA
CGACGTTGACGCGCTTGCCGTCCCCGAACTACTCCTCGTCGCCGCGCCAT
CCTCCGTGGCGGTGGTGCCTGATGAGGACAGTGATGAATTGTCGTCAACG
GTAGAAATCGCCGGAGACGGGGTATACTCCGGGCTGCTGGAGGCGCTTGA
GCTGGCAGTAGTCCTGTTCAGCAGGGTAGGCGCCGGGGTCATGGCACCAC
TTAGGGACGGTGTAGAAGGCACCCCCGTGGCGAAAATTGGTGCCCCAGAA
GGCATGGCGGTCGGTGGAGAGAGCGTGTTGTCCACAGGAGCAACCGTGCC
TGCAGCAGCTGTAGAAAATGTTTGGGCAGGTCCCTGGGTCAGAATTCCTG
GT
back to top