mRNA_C-linearis_contig9.16630.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16630.1
Unique NamemRNA_C-linearis_contig9.16630.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:2150696..2151243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size549
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930706.4879627-CDS-C-linearis_contig9:2150695..21510521622930706.4879627-CDS-C-linearis_contig9:2150695..2151052Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2150696..2151052 +
1690881207.045642-CDS-C-linearis_contig9:2150695..21510521690881207.045642-CDS-C-linearis_contig9:2150695..2151052Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2150696..2151052 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930706.511286-UTR-C-linearis_contig9:2151052..21512431622930706.511286-UTR-C-linearis_contig9:2151052..2151243Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2151053..2151243 +
1690881207.0581045-UTR-C-linearis_contig9:2151052..21512431690881207.0581045-UTR-C-linearis_contig9:2151052..2151243Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2151053..2151243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16630.1prot_C-linearis_contig9.16630.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 2150696..2151052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16630.1

>prot_C-linearis_contig9.16630.1 ID=prot_C-linearis_contig9.16630.1|Name=mRNA_C-linearis_contig9.16630.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=119bp
GGCAPGCVGRCCKNVKFGEFSFVVGLIITNYHHASQHGIVFEFELLSFPC
SRSLHRTAPHPKPQTVLVLPAVCTRLARRQTCGEILVITLNSLHLTSLDL
TSPHFTHRHQKSSCGTKR*
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mRNA from alignment at C-linearis_contig9:2150696..2151243+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16630.1 ID=mRNA_C-linearis_contig9.16630.1|Name=mRNA_C-linearis_contig9.16630.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=548bp|location=Sequence derived from alignment at C-linearis_contig9:2150696..2151243+ (Chordaria linearis ClinC8C monoicous)
GGGGGTTGCGCGCCGGGGTGCGTCGGAAGGTGCTGCAAAAATGTAAAATT
CGGTGAATTCTCGTTCGTGGTGGGGTTAATTATCACCAATTATCATCACG
CATCACAGCATGGTATCGTCTTTGAGTTCGAACTTCTGTCTTTTCCATGC
TCTCGTTCACTCCACCGCACCGCACCACACCCGAAACCCCAAACGGTGCT
CGTCCTGCCTGCTGTTTGCACCCGCCTCGCCCGGCGCCAAACATGCGGGG
AAATACTGGTGATAACACTAAATTCACTTCACTTGACTTCGCTTGACTTG
ACTTCACCGCACTTCACTCATCGGCACCAGAAATCGAGCTGTGGTACGAA
AAGGTGAGCGTCTAACCTGAAACCTACGTTTCCGCTGTTGGCGAGCCTGT
TTCGTCGTGATTCTGCAGCTACGCCGAGCTGTGAAATCGCATGTAGCATG
CATGTGTCTCCCCCCAAAGCCGTACCACATAGCACGGCAGTGAACACCAC
CTTACCACAAGTATGATTTGTCGGCTCATGGGGAAACGTTTTTCAGGC
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Coding sequence (CDS) from alignment at C-linearis_contig9:2150696..2151243+

>mRNA_C-linearis_contig9.16630.1 ID=mRNA_C-linearis_contig9.16630.1|Name=mRNA_C-linearis_contig9.16630.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at C-linearis_contig9:2150696..2151243+ (Chordaria linearis ClinC8C monoicous)
GGGGGTTGCGCGCCGGGGTGCGTCGGAAGGTGCTGCAAAAATGTAAAATT
CGGTGAATTCTCGTTCGTGGTGGGGTTAATTATCACCAATTATCATCACG
CATCACAGCATGGTATCGTCTTTGAGTTCGAACTTCTGTCTTTTCCATGC
TCTCGTTCACTCCACCGCACCGCACCACACCCGAAACCCCAAACGGTGCT
CGTCCTGCCTGCTGTTTGCACCCGCCTCGCCCGGCGCCAAACATGCGGGG
AAATACTGGTGATAACACTAAATTCACTTCACTTGACTTCGCTTGACTTG
ACTTCACCGCACTTCACTCATCGGCACCAGAAATCGAGCTGTGGTACGAA
AAGGTGAGGGGGTTGCGCGCCGGGGTGCGTCGGAAGGTGCTGCAAAAATG
TAAAATTCGGTGAATTCTCGTTCGTGGTGGGGTTAATTATCACCAATTAT
CATCACGCATCACAGCATGGTATCGTCTTTGAGTTCGAACTTCTGTCTTT
TCCATGCTCTCGTTCACTCCACCGCACCGCACCACACCCGAAACCCCAAA
CGGTGCTCGTCCTGCCTGCTGTTTGCACCCGCCTCGCCCGGCGCCAAACA
TGCGGGGAAATACTGGTGATAACACTAAATTCACTTCACTTGACTTCGCT
TGACTTGACTTCACCGCACTTCACTCATCGGCACCAGAAATCGAGCTGTG
GTACGAAAAGGTGA
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