mRNA_C-linearis_contig9.16597.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16597.1 vs. uniprot
Match: A0A6H5JUJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ0_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 8.500e-18 Identity = 50/92 (54.35%), Postives = 62/92 (67.39%), Query Frame = -1
Query: 75 YDSADSRYRQGREGRKLHWTASADGPMRHDVQPGRTRKETRESREL------ANCAEEAFLAVVMEEEHGAKKVEEYVCNSLVEARLQEEQA 332
YD ADSRY G EG+KL W AS+ G +RH +QPGRTRK+TRE R A EEA L+ V+E E+G K V EY+ SL+E R+Q+EQA
Sbjct: 125 YDPADSRYPSGTEGKKLLWGASSAGQLRHVLQPGRTRKQTRELRSSEEEPSEAPAPEEALLSTVLETENGPKIVAEYIRESLLEERMQDEQA 216
BLAST of mRNA_C-linearis_contig9.16597.1 vs. uniprot
Match: A0A6H5JD36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD36_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 6.000e-17 Identity = 53/107 (49.53%), Postives = 68/107 (63.55%), Query Frame = -1
Query: 30 YDSADSRYRQGREGRKLHWTASADGPMRHDVQPGRTRKETRESREL------ANCAEEAFLAVVMEEEHGAKKVEEYVCNSLVEARLQEEQALMQQAFREAEMAFHA 332
YD ADSRY G EG+KL W AS+ G +R+ +QPGRTRK+ RE R A EEA L+ V+E E+G + V EY+ SL+E R+Q+EQA RE E+AF A
Sbjct: 123 YDPADSRYPSGTEGKKLLWRASSAGQLRYVLQPGRTRKQIRELRSSEEEPSEAPAPEEALLSTVLETENGPEIVAEYIRESLLEERMQDEQA-----HRELELAFIA 224
BLAST of mRNA_C-linearis_contig9.16597.1 vs. uniprot
Match: A0A6H5K0Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Z3_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 3.310e-16 Identity = 52/110 (47.27%), Postives = 67/110 (60.91%), Query Frame = -1
Query: 33 YDSADSRYRQGREGRKLHWTASADGPMRHDVQPGRTRKETRESRE------LANCAEEAFLAVVMEEEHGAKKVEEYVCNSLVEARLQEEQA----LMQQAFREAEMAFH 332
YD DSRY G EG+KL W AS G +RH +Q GRTRK+TRE R +A EEA L+ V+E E+G + V EY+ SL+E R+Q+EQA L +Q + AFH
Sbjct: 405 YDPVDSRYPSGTEGKKLLWGASCAGQLRHKLQTGRTRKQTRELRSSEQEPSVAPAPEEALLSTVLETENGPEIVAEYIRESLLEERMQDEQAHREELKKQLQYDLVKAFH 514
BLAST of mRNA_C-linearis_contig9.16597.1 vs. uniprot
Match: A0A6H5JDX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDX3_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 8.460e-16 Identity = 48/92 (52.17%), Postives = 61/92 (66.30%), Query Frame = -1
Query: 75 YDSADSRYRQGREGRKLHWTASADGPMRHDVQPGRTRKETRESR------ELANCAEEAFLAVVMEEEHGAKKVEEYVCNSLVEARLQEEQA 332
YD ADSRY G EG+KL W AS+ G +RH +QPGRTRK+TRE R A EEA L+ V+E E+G + V E + SL+E R+Q+EQA
Sbjct: 535 YDPADSRYSSGTEGKKLLWGASSAGQLRHVLQPGRTRKQTRELRGSEEEPSEAPVPEEALLSTVLETENGPEIVAESIRESLLEERMQDEQA 626
BLAST of mRNA_C-linearis_contig9.16597.1 vs. uniprot
Match: A0A6H5K494_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K494_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 1.740e-14 Identity = 52/124 (41.94%), Postives = 67/124 (54.03%), Query Frame = -1
Query: 12 YDSADSRYRQGREGRKLHWTASADGPMRHDVQPGRTRKETRESRELANCA--------EEAFLAVVMEEEHGAKKVEEYVCNSLVEARLQEEQAL---------MQQAFREAEMAFHAAIDEEE 332
YD AD RY G EG+KL W AS GP+RH ++ GRTRK+TRE + EEA LA ++E G VE+Y+CNSLV+ + QEEQ MQ+ + AF A +D E
Sbjct: 101 YDPADDRYPGGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGAGXXXXXXXXXXXEEALLATILET-GGTGIVEDYICNSLVKEQWQEEQTRGMEEMYRREMQEVLGPEQQAFRAEVDASE 223
BLAST of mRNA_C-linearis_contig9.16597.1 vs. uniprot
Match: A0A6H5JRY6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY6_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 3.380e-14 Identity = 52/122 (42.62%), Postives = 68/122 (55.74%), Query Frame = -1
Query: 21 DSLGGDDYDSADSRYRQGREGRKLHWTASADGPMRHDVQPGRTRKETRESRELANCA--EEAFLAVVMEEEHGAKKVEEYVCNSLVEARLQEEQAL---------MQQAFREAEMAFHAAID 353
++L G YD AD RY +G EG+KL W AS GP+RH ++ GRTRK+TRE EEA LA ++E G VE+Y CNSLV+ + EEQ MQ+ + AF A +D
Sbjct: 126 ENLEGLKYDPADERYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMPGPGETPDPEEALLATILET-GGTGIVEDYTCNSLVKGQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVD 246
BLAST of mRNA_C-linearis_contig9.16597.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 3.390e-14 Identity = 50/121 (41.32%), Postives = 67/121 (55.37%), Query Frame = -1
Query: 21 YDSADSRYRQGREGRKLHWTASADGPMRHDVQPGRTRKETRESRELANCA--------EEAFLAVVMEEEHGAKKVEEYVCNSLVEARLQEEQAL---------MQQAFREAEMAFHAAID 332
YD AD RY +G EG+KL W AS GP+RH ++ GRTRK+TRE + + EEA LA ++E G VE+Y+CNSLV+ + EEQ MQ+ + AF A +D
Sbjct: 64 YDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGAGEMSGPGETPDPEEALLATILET-GGTGIVEDYICNSLVKEQWDEEQTRHMEEMYRREMQEVLGPEQQAFGAEVD 183
BLAST of mRNA_C-linearis_contig9.16597.1 vs. uniprot
Match: A0A6H5LQZ7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQZ7_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 8.670e-14 Identity = 44/92 (47.83%), Postives = 59/92 (64.13%), Query Frame = -1
Query: 75 YDSADSRYRQGREGRKLHWTASADGPMRHDVQPGRTRKETRESREL------ANCAEEAFLAVVMEEEHGAKKVEEYVCNSLVEARLQEEQA 332
YD ADS + G EG+ L W AS+ G +RH +QPGRTRK+TRE R A EEA L+ ++E E+ + V EY+ SL+E R+Q+EQA
Sbjct: 264 YDPADSCFPSGMEGKTLLWGASSAGQLRHVLQPGRTRKQTRELRSSEEEPSEAPAPEEALLSTILETENSPEIVAEYIRESLLEERMQDEQA 355
BLAST of mRNA_C-linearis_contig9.16597.1 vs. uniprot
Match: A0A6H5K0G8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G8_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 8.760e-14 Identity = 50/121 (41.32%), Postives = 66/121 (54.55%), Query Frame = -1
Query: 21 YDSADSRYRQGREGRKLHWTASADGPMRHDVQPGRTRKETRESRELANCA--------EEAFLAVVMEEEHGAKKVEEYVCNSLVEARLQEEQAL---------MQQAFREAEMAFHAAID 332
YD AD RY +G EG+KL W AS GP+RH ++ GRTRK+TRE + EEA LA ++E G VE+Y+CNSLV+ + EEQ MQ+ + AF A +D
Sbjct: 573 YDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGAGXXXXXXXXXXXEEALLATILET-GGTGIVEDYICNSLVKEQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVD 692
BLAST of mRNA_C-linearis_contig9.16597.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 8.830e-14 Identity = 50/121 (41.32%), Postives = 66/121 (54.55%), Query Frame = -1
Query: 21 YDSADSRYRQGREGRKLHWTASADGPMRHDVQPGRTRKETRESRELANCA--------EEAFLAVVMEEEHGAKKVEEYVCNSLVEARLQEEQAL---------MQQAFREAEMAFHAAID 332
YD AD RY +G EG+KL W AS GP+RH ++ GRTRK+TRE + EEA LA ++E G VE+Y+CNSLV+ + EEQ MQ+ + AF A +D
Sbjct: 210 YDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGAGXXXXXXXXXXXEEALLATILET-GGTGIVEDYICNSLVKEQWDEEQTRCMEEMYRREMQEVLGPEQQAFGAEVD 329 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16597.1 >prot_C-linearis_contig9.16597.1 ID=prot_C-linearis_contig9.16597.1|Name=mRNA_C-linearis_contig9.16597.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=107bp MKRHLRLTKRLLHKRLLLLQTGLHQRVANILLDLLRAVLLLHDHSKKRLLback to top mRNA from alignment at C-linearis_contig9:1725831..1726183+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16597.1 ID=mRNA_C-linearis_contig9.16597.1|Name=mRNA_C-linearis_contig9.16597.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=353bp|location=Sequence derived from alignment at C-linearis_contig9:1725831..1726183+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:1725831..1726183+ >mRNA_C-linearis_contig9.16597.1 ID=mRNA_C-linearis_contig9.16597.1|Name=mRNA_C-linearis_contig9.16597.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at C-linearis_contig9:1725831..1726183+ (Chordaria linearis ClinC8C monoicous)back to top |