mRNA_C-linearis_contig9.16597.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16597.1
Unique NamemRNA_C-linearis_contig9.16597.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig9.16597.1 vs. uniprot
Match: A0A6H5JUJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ0_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.500e-18
Identity = 50/92 (54.35%), Postives = 62/92 (67.39%), Query Frame = -1
Query:   75 YDSADSRYRQGREGRKLHWTASADGPMRHDVQPGRTRKETRESREL------ANCAEEAFLAVVMEEEHGAKKVEEYVCNSLVEARLQEEQA 332
            YD ADSRY  G EG+KL W AS+ G +RH +QPGRTRK+TRE R        A   EEA L+ V+E E+G K V EY+  SL+E R+Q+EQA
Sbjct:  125 YDPADSRYPSGTEGKKLLWGASSAGQLRHVLQPGRTRKQTRELRSSEEEPSEAPAPEEALLSTVLETENGPKIVAEYIRESLLEERMQDEQA 216          
BLAST of mRNA_C-linearis_contig9.16597.1 vs. uniprot
Match: A0A6H5JD36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD36_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 6.000e-17
Identity = 53/107 (49.53%), Postives = 68/107 (63.55%), Query Frame = -1
Query:   30 YDSADSRYRQGREGRKLHWTASADGPMRHDVQPGRTRKETRESREL------ANCAEEAFLAVVMEEEHGAKKVEEYVCNSLVEARLQEEQALMQQAFREAEMAFHA 332
            YD ADSRY  G EG+KL W AS+ G +R+ +QPGRTRK+ RE R        A   EEA L+ V+E E+G + V EY+  SL+E R+Q+EQA      RE E+AF A
Sbjct:  123 YDPADSRYPSGTEGKKLLWRASSAGQLRYVLQPGRTRKQIRELRSSEEEPSEAPAPEEALLSTVLETENGPEIVAEYIRESLLEERMQDEQA-----HRELELAFIA 224          
BLAST of mRNA_C-linearis_contig9.16597.1 vs. uniprot
Match: A0A6H5K0Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Z3_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.310e-16
Identity = 52/110 (47.27%), Postives = 67/110 (60.91%), Query Frame = -1
Query:   33 YDSADSRYRQGREGRKLHWTASADGPMRHDVQPGRTRKETRESRE------LANCAEEAFLAVVMEEEHGAKKVEEYVCNSLVEARLQEEQA----LMQQAFREAEMAFH 332
            YD  DSRY  G EG+KL W AS  G +RH +Q GRTRK+TRE R       +A   EEA L+ V+E E+G + V EY+  SL+E R+Q+EQA    L +Q   +   AFH
Sbjct:  405 YDPVDSRYPSGTEGKKLLWGASCAGQLRHKLQTGRTRKQTRELRSSEQEPSVAPAPEEALLSTVLETENGPEIVAEYIRESLLEERMQDEQAHREELKKQLQYDLVKAFH 514          
BLAST of mRNA_C-linearis_contig9.16597.1 vs. uniprot
Match: A0A6H5JDX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDX3_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 8.460e-16
Identity = 48/92 (52.17%), Postives = 61/92 (66.30%), Query Frame = -1
Query:   75 YDSADSRYRQGREGRKLHWTASADGPMRHDVQPGRTRKETRESR------ELANCAEEAFLAVVMEEEHGAKKVEEYVCNSLVEARLQEEQA 332
            YD ADSRY  G EG+KL W AS+ G +RH +QPGRTRK+TRE R        A   EEA L+ V+E E+G + V E +  SL+E R+Q+EQA
Sbjct:  535 YDPADSRYSSGTEGKKLLWGASSAGQLRHVLQPGRTRKQTRELRGSEEEPSEAPVPEEALLSTVLETENGPEIVAESIRESLLEERMQDEQA 626          
BLAST of mRNA_C-linearis_contig9.16597.1 vs. uniprot
Match: A0A6H5K494_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K494_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.740e-14
Identity = 52/124 (41.94%), Postives = 67/124 (54.03%), Query Frame = -1
Query:   12 YDSADSRYRQGREGRKLHWTASADGPMRHDVQPGRTRKETRESRELANCA--------EEAFLAVVMEEEHGAKKVEEYVCNSLVEARLQEEQAL---------MQQAFREAEMAFHAAIDEEE 332
            YD AD RY  G EG+KL W AS  GP+RH ++ GRTRK+TRE +              EEA LA ++E   G   VE+Y+CNSLV+ + QEEQ           MQ+     + AF A +D  E
Sbjct:  101 YDPADDRYPGGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGAGXXXXXXXXXXXEEALLATILET-GGTGIVEDYICNSLVKEQWQEEQTRGMEEMYRREMQEVLGPEQQAFRAEVDASE 223          
BLAST of mRNA_C-linearis_contig9.16597.1 vs. uniprot
Match: A0A6H5JRY6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY6_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 3.380e-14
Identity = 52/122 (42.62%), Postives = 68/122 (55.74%), Query Frame = -1
Query:   21 DSLGGDDYDSADSRYRQGREGRKLHWTASADGPMRHDVQPGRTRKETRESRELANCA--EEAFLAVVMEEEHGAKKVEEYVCNSLVEARLQEEQAL---------MQQAFREAEMAFHAAID 353
            ++L G  YD AD RY +G EG+KL W AS  GP+RH ++ GRTRK+TRE          EEA LA ++E   G   VE+Y CNSLV+ +  EEQ           MQ+     + AF A +D
Sbjct:  126 ENLEGLKYDPADERYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMPGPGETPDPEEALLATILET-GGTGIVEDYTCNSLVKGQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVD 246          
BLAST of mRNA_C-linearis_contig9.16597.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 3.390e-14
Identity = 50/121 (41.32%), Postives = 67/121 (55.37%), Query Frame = -1
Query:   21 YDSADSRYRQGREGRKLHWTASADGPMRHDVQPGRTRKETRESRELANCA--------EEAFLAVVMEEEHGAKKVEEYVCNSLVEARLQEEQAL---------MQQAFREAEMAFHAAID 332
            YD AD RY +G EG+KL W AS  GP+RH ++ GRTRK+TRE +     +        EEA LA ++E   G   VE+Y+CNSLV+ +  EEQ           MQ+     + AF A +D
Sbjct:   64 YDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGAGEMSGPGETPDPEEALLATILET-GGTGIVEDYICNSLVKEQWDEEQTRHMEEMYRREMQEVLGPEQQAFGAEVD 183          
BLAST of mRNA_C-linearis_contig9.16597.1 vs. uniprot
Match: A0A6H5LQZ7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQZ7_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 8.670e-14
Identity = 44/92 (47.83%), Postives = 59/92 (64.13%), Query Frame = -1
Query:   75 YDSADSRYRQGREGRKLHWTASADGPMRHDVQPGRTRKETRESREL------ANCAEEAFLAVVMEEEHGAKKVEEYVCNSLVEARLQEEQA 332
            YD ADS +  G EG+ L W AS+ G +RH +QPGRTRK+TRE R        A   EEA L+ ++E E+  + V EY+  SL+E R+Q+EQA
Sbjct:  264 YDPADSCFPSGMEGKTLLWGASSAGQLRHVLQPGRTRKQTRELRSSEEEPSEAPAPEEALLSTILETENSPEIVAEYIRESLLEERMQDEQA 355          
BLAST of mRNA_C-linearis_contig9.16597.1 vs. uniprot
Match: A0A6H5K0G8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G8_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 8.760e-14
Identity = 50/121 (41.32%), Postives = 66/121 (54.55%), Query Frame = -1
Query:   21 YDSADSRYRQGREGRKLHWTASADGPMRHDVQPGRTRKETRESRELANCA--------EEAFLAVVMEEEHGAKKVEEYVCNSLVEARLQEEQAL---------MQQAFREAEMAFHAAID 332
            YD AD RY +G EG+KL W AS  GP+RH ++ GRTRK+TRE +              EEA LA ++E   G   VE+Y+CNSLV+ +  EEQ           MQ+     + AF A +D
Sbjct:  573 YDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGAGXXXXXXXXXXXEEALLATILET-GGTGIVEDYICNSLVKEQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVD 692          
BLAST of mRNA_C-linearis_contig9.16597.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 8.830e-14
Identity = 50/121 (41.32%), Postives = 66/121 (54.55%), Query Frame = -1
Query:   21 YDSADSRYRQGREGRKLHWTASADGPMRHDVQPGRTRKETRESRELANCA--------EEAFLAVVMEEEHGAKKVEEYVCNSLVEARLQEEQAL---------MQQAFREAEMAFHAAID 332
            YD AD RY +G EG+KL W AS  GP+RH ++ GRTRK+TRE +              EEA LA ++E   G   VE+Y+CNSLV+ +  EEQ           MQ+     + AF A +D
Sbjct:  210 YDPADDRYPRGLEGKKLLWGASNAGPLRHGLESGRTRKQTREMQGAGXXXXXXXXXXXEEALLATILET-GGTGIVEDYICNSLVKEQWDEEQTRCMEEMYRREMQEVLGPEQQAFGAEVD 329          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUJ0_9PHAE8.500e-1854.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD36_9PHAE6.000e-1749.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0Z3_9PHAE3.310e-1647.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDX3_9PHAE8.460e-1652.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K494_9PHAE1.740e-1441.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRY6_9PHAE3.380e-1442.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE3.390e-1441.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LQZ7_9PHAE8.670e-1447.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K0G8_9PHAE8.760e-1441.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE8.830e-1441.32Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1725831..1726183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size355
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930706.1141593-UTR-C-linearis_contig9:1725830..17258621622930706.1141593-UTR-C-linearis_contig9:1725830..1725862Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1725831..1725862 +
1690881206.8831012-UTR-C-linearis_contig9:1725830..17258621690881206.8831012-UTR-C-linearis_contig9:1725830..1725862Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1725831..1725862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930706.131014-CDS-C-linearis_contig9:1725862..17261831622930706.131014-CDS-C-linearis_contig9:1725862..1726183Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1725863..1726183 +
1690881206.9003236-CDS-C-linearis_contig9:1725862..17261831690881206.9003236-CDS-C-linearis_contig9:1725862..1726183Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1725863..1726183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16597.1prot_C-linearis_contig9.16597.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1725863..1726183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16597.1

>prot_C-linearis_contig9.16597.1 ID=prot_C-linearis_contig9.16597.1|Name=mRNA_C-linearis_contig9.16597.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=107bp
MKRHLRLTKRLLHKRLLLLQTGLHQRVANILLDLLRAVLLLHDHSKKRLL
GAICQLPGLSGLLPGAARLYVVTHRPIRRCSPVELAPLSSLTVAAVGGIV
IVATEAV
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mRNA from alignment at C-linearis_contig9:1725831..1726183+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16597.1 ID=mRNA_C-linearis_contig9.16597.1|Name=mRNA_C-linearis_contig9.16597.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=353bp|location=Sequence derived from alignment at C-linearis_contig9:1725831..1726183+ (Chordaria linearis ClinC8C monoicous)
ACGTTCCGGCGTTCCTCTTCGTCGATTGCTGCATGAAACGCCATCTCCGC CTCACGAAACGCCTGCTGCATAAGCGCCTGCTCCTCCTGCAGACGGGCCT CCACCAGCGAGTTGCAAACATACTCCTCGACCTTCTTCGCGCCGTGCTCC TCCTCCATGACCACAGCAAGAAACGCCTCCTCGGCGCAATTTGCCAGCTC CCGGGACTCTCGGGTCTCCTTCCGGGTGCGGCCAGGCTGTACGTCGTGAC GCATCGGCCCATCCGCCGATGCAGTCCAGTGGAGCTTGCGCCCCTCTCGT CCTTGACGGTAGCGGCTGTCGGCGGAATCGTAATCGTCGCCACCGAGGCT GTC
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Coding sequence (CDS) from alignment at C-linearis_contig9:1725831..1726183+

>mRNA_C-linearis_contig9.16597.1 ID=mRNA_C-linearis_contig9.16597.1|Name=mRNA_C-linearis_contig9.16597.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at C-linearis_contig9:1725831..1726183+ (Chordaria linearis ClinC8C monoicous)
ATGAAACGCCATCTCCGCCTCACGAAACGCCTGCTGCATAAGCGCCTGCT
CCTCCTGCAGACGGGCCTCCACCAGCGAGTTGCAAACATACTCCTCGACC
TTCTTCGCGCCGTGCTCCTCCTCCATGACCACAGCAAGAAACGCCTCCTC
GGCGCAATTTGCCAGCTCCCGGGACTCTCGGGTCTCCTTCCGGGTGCGGC
CAGGCTGTACGTCGTGACGCATCGGCCCATCCGCCGATGCAGTCCAGTGG
AGCTTGCGCCCCTCTCGTCCTTGACGGTAGCGGCTGTCGGCGGAATCGTA
ATCGTCGCCACCGAGGCTGTCATGAAACGCCATCTCCGCCTCACGAAACG
CCTGCTGCATAAGCGCCTGCTCCTCCTGCAGACGGGCCTCCACCAGCGAG
TTGCAAACATACTCCTCGACCTTCTTCGCGCCGTGCTCCTCCTCCATGAC
CACAGCAAGAAACGCCTCCTCGGCGCAATTTGCCAGCTCCCGGGACTCTC
GGGTCTCCTTCCGGGTGCGGCCAGGCTGTACGTCGTGACGCATCGGCCCA
TCCGCCGATGCAGTCCAGTGGAGCTTGCGCCCCTCTCGTCCTTGACGGTA
GCGGCTGTCGGCGGAATCGTAATCGTCGCCACCGAGGCTGTC
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