mRNA_C-linearis_contig9.16596.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16596.1 vs. uniprot
Match: D8LSK8_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK8_ECTSI) HSP 1 Score: 152 bits (383), Expect = 3.470e-35 Identity = 135/368 (36.68%), Postives = 185/368 (50.27%), Query Frame = 1
Query: 166 VEEMLRASGSAEGSAELIEGTEYAFPPLIYAVYNEKAEMVRLLLDHGAKVDSRTC----CTTEGNRIPIGFTALHSAASQGKLEFVLMLLEAGASPNIQDDEGSTPLLYVTKFEDT---EHHVAISRALLXXXXXXXXXDVREGTPFHVAAGRGSIEVVDMLLDKAPSALNLTTATGATALYLAATEPGLDYMVSHLLSRGATNEPVLGNGS-CPLAGAVHYALESIVEVILKE-GWKAVGGAIALPRAIHLASIKDLPRTLL--MLLDAEGPDKRQSWSRCVNVDFFISPLHVAIASDSVRAVSVLLQAGANEGVLVNRIFNQYNHQNRMIFMPRTP--KRDQASKAAVRRTVARAAAFRARSWAWP 1230
VE L A S +GS+EL + P+I A + K M LL+ A VD + C+ + G ALH A + ++ +LL+AGA P+ + +G TPL+ ED+ E ++R XXXXXXXXX T AA R ++D+LL KAP+ LN T G T LY AA G VSHLLS GA P CPL AV + +V V+L + G KA+GGA +PRA+ A+ R + MLL AEG ++ W+RC + + LH A++ ++ A VLL AGA+E N+ R + P +RD A K A+ R + R A+RARSWAWP
Sbjct: 126 VERTLAAGASVDGSSEL------DWRPIIAAAASCKVGMAELLIKRKADVDLGSLNDLRCSDGLEVLGKGVRALHVAINHYNVDVFRLLLKAGADPDSANGKGLTPLMLTCILEDSARGEQRAVMAREXXXXXXXXXXXXXXXKTALGFAAARDQTNLIDILLQKAPTTLNRATPDGLTPLYAAAMS-GKGKAVSHLLSAGARQPPASAEKDMCPLVAAVRENHQEVVRVLLTDRGMKAIGGADVIPRAVGAAASARKGRASIVRMLLSAEGHEREGHWARCRYKEDPV--LHSAVSFGNISATRVLLAAGADETAE-----NEDGRPAREVVGFNAPSLQRDPAKKGAIVRMLERGPAYRARSWAWP 479
BLAST of mRNA_C-linearis_contig9.16596.1 vs. uniprot
Match: A0A6H5JK53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK53_9PHAE) HSP 1 Score: 147 bits (370), Expect = 8.140e-35 Identity = 122/363 (33.61%), Postives = 184/363 (50.69%), Query Frame = 1
Query: 142 VIHGHVQEVEEMLRASGSAEGSAELIEGTEYAFPPLIYAVYNEKAEMVRLLLDHGAKVDSRTCCTTEGNRIPIGFTALHSAASQGKLEFVLMLLEAGASPNIQDDEGSTPLLYVTKFEDTEHHVAISRALLXXXXXXXXXDVREGTPFHVAAGRGSIEVVDMLLDKAPSALNLTTATGATALYLAATEPGLDYMVSHLLSRGATNEPVLGNGSCPLAGAVHYALESIVEVILKEGWKAVGGAIALPRAIHLASIKDLPRTLLMLLDAEGPDKRQSWSRCVNVDFFISPLHVAIASDSVRAVSVLLQAGANEGVLVNRIFNQYNHQNRMIFMPRTPKRDQASKAAVRRTVARAAAFRARSWAWP 1230
V G++ V+++L + +GS EL +PP++ A N A M++LL+ GA +++ R P G A+H+A S + +LLEAGA N +D G TPL+ +T DT ++R L + + HVAAG G++EV+ ++L PSALN+ G T + +AA G V HLLS GA++ V + + A +V ++L+ G VGG A+P +I +A + L ML+ AEG + R+ W+ C D +PLH+A A SVRA+ VLL AGA E L N + + + P +R +AAV R + R A+RARS+ WP
Sbjct: 15 VEKGNLSGVKKLLAGGANVDGSREL------EYPPIMGAARNGNAAMLKLLISKGADLETEA-------RFPAGSRAIHAAISGENPTALSVLLEAGADFNSRDGAGETPLM-LTALADTG--ALLARELFKVGASPFVKNADGMSAMHVAAGLGNLEVMTVILTNTPSALNVLDNKGFTPMGIAALR-GQRRAVFHLLSAGASDLGV-DEQNAAILWACDGGHPRMVRMMLEHGINRVGGLGAIPNSIGVAVQGRQAKILEMLVSAEGEENRRKWAECRLRDG--TPLHLAAAWVSVRAIHVLLSAGARE-TLPNGYGKLASEEVGIALRP-PARRSPRKEAAVVRMLQRGPAYRARSYGWP 355
BLAST of mRNA_C-linearis_contig9.16596.1 vs. uniprot
Match: A0A6H5JSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC7_9PHAE) HSP 1 Score: 147 bits (370), Expect = 1.780e-33 Identity = 132/368 (35.87%), Postives = 184/368 (50.00%), Query Frame = 1
Query: 166 VEEMLRASGSAEGSAELIEGTEYAFPPLIYAVYNEKAEMVRLLLDHGAKVDSRTC----CTTEGNRIPIGFTALHSAASQGKLEFVLMLLEAGASPNIQDDEGSTPLLYVTKFEDT---EHHVAISRALLXXXXXXXXXDVREGTPFHVAAGRGSIEVVDMLLDKAPSALNLTTATGATALYLAATEPGLDYMVSHLLSRGATNEPVLGNGS-CPLAGAVHYALESIVEVILKE-GWKAVGGAIALPRAIHLASIKDLPRTLL--MLLDAEGPDKRQSWSRCVNVDFFISPLHVAIASDSVRAVSVLLQAGANEGVLVNRIFNQYNHQNRMIFMPRTP--KRDQASKAAVRRTVARAAAFRARSWAWP 1230
VE L A S +GS+EL + P+I A + M LL+ A VD + C+ + G ALH A + ++ +LL+AGA P+ + +G TPL+ ED+ E ++R XXXXXXXXX T AA R +++D+LL KAP+ LN T G T LY AA G VSHLLS GA P CPL AV + +V V+L + G +A+ G +PRA+ A+ R + MLL AEG ++ W+RC + + LH A++ ++ A VLL AGA+E N+ R + P +RD A K A+ R +AR A+RARSWAWP
Sbjct: 134 VERTLAAGASVDGSSEL------DWRPIIAAAASGSVGMADLLIKRQANVDLGSLNDLRCSDGLEVLGKGVRALHVAINHYHVDVFRLLLKAGADPDSANGKGLTPLMLTCILEDSARGEQRAVMAREXXXXXXXXXXXXXXXKTALGFAAARDQTDLIDILLQKAPTTLNRATPDGLTPLYAAAMS-GKGKAVSHLLSAGARQPPASAEKDMCPLVAAVRENHQEVVRVLLTDRGMEAIDGPDVIPRAVGAAASARKGRASIVRMLLSAEGHEREGHWARCRYKEDPV--LHCAVSFGNISATRVLLAAGADETAE-----NEDGRPAREVVGFNAPSLQRDPAKKGAIVRMLARGPAYRARSWAWP 487
BLAST of mRNA_C-linearis_contig9.16596.1 vs. uniprot
Match: D7FLL0_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL0_ECTSI) HSP 1 Score: 120 bits (302), Expect = 8.890e-26 Identity = 131/422 (31.04%), Postives = 192/422 (45.50%), Query Frame = 1
Query: 256 AVYNEKAEMVRLLLDHGAKVDSRTCCTTEGNR--------IPI-GFTALHSAASQGK-LEFVLMLLEAGASPNIQDDEGSTPLLYVTKFEDTEHHVAIS-RALLXXXXXXXXXDVREGTPFHVAAGRGSIEVVDMLLDKAPSALNLTTATGATALYLAATEPGLDYMVSHLLSRGATNEPVLGNGSCPLAGAVHYALESIVEVILKEGWKAVGGA-IALPRAIHLASIKDLPRTLLMLLDAEGPDKRQSWSRCVNVDFFI--SPLHVAIASDSVRAVSVLLQAGANEGVLVNR------IFNQYNHQNRMI--FMPRTPKR--DQASKAAVRRTVARAAAFRARSWAWPVAVVVVGRDAAAVAAPVXXXXXPAESEIGGGGKQPFFVLGANRRPIAPLGVIIHRPRRSMWLVGLVSRHALKR 1449
A + + E+ +LL++ GA V++ + G R +P+ G A H+A K ++ V +LL AGA P+ + G TPL+ + + E + + L+ D T F A G+ E + +L +P+AL G +ALY+A E L +VS LLS GA + CPLA A+ E IV+++L AVGG +A A+ A + + L M+L+ G + W+ + D+ + S LH + +VS LL AGANE + + QN + PRTP R D +A +RRTV RA AFRARSWAWP AA+ S G K G R+ PL V IHRP R+ L G+++R+ KR
Sbjct: 2 AAVHAQTEIAQLLIERGAHVNAGVTNPSMGTRERVVNSTFLPMQGENAFHAAICFAKKMDLVDLLLRAGADPSAGNKLGITPLMCLAREEPPGPWLECALEVLIKAGVNPDQVDAEGWTAFLHAVEVGNPEKIRRILALSPAALGRIAWDGMSALYVACNEGHLS-VVSCLLSLGAKHPRTTIRDHCPLAVAIIKGHEDIVKILLAN-LSAVGGVELAAEMALTCAITQSRGKILRMMLNITGEENAARWA---DSDWGLAGSLLHYSCGYILPASVSALLAAGANENATDQAGQRPIDVIGTMDLQNPPLSPLHPRTPTRFRDPVKEAEIRRTVERAPAFRARSWAWPAFEWAGCSTTAAICG---------SSTCNGLTK----ASGQGRKTRTPLVVQIHRPERNKLLSGILTRYQQKR 405
BLAST of mRNA_C-linearis_contig9.16596.1 vs. uniprot
Match: D7FVG9_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVG9_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 9.820e-18 Identity = 91/324 (28.09%), Postives = 137/324 (42.28%), Query Frame = 1
Query: 142 VIHGHVQEVEEMLRASGSAEGSAELIEGTEYAFPPLIYAVYNEKAEMVRLLLDHGAKVDSRTCCTTEGNRIPIGFTA------LHSAASQGKLEFVLMLLEAGASPNIQDDEGSTPLLYVTKFEDT-EHHVAISRALLXXXXXXXXXDVREGTPFHVAAGRGSIEVVDMLLDKAPSALNLTTATGATALYLAATEPGLDYMVSHLLSRGATNEPVL-------GNGSCPLAGAVHYALESIVEVILKEGWKAVGGAIALPRAIHLASIKDLPRTLLMLLDAEGPDKRQSWSRCVNVDFFISP-LHVAIASDSVRAVSVLLQAGA 1068
V G + + +L A S +GS +L PL A +M LL++ GAK+D NR+ T +H+A G+ E +L+ AGA PN+ + +G TPL+ + H +I R LL D + T H AAG+G +E++DML KAP+ L+ G T L AA CPL A+ ++V+V+L + + ++ AI A + R L L+ A G +++Q S + F SP LH+A+A + SVLL AGA
Sbjct: 11 VSRGDLARTQALLAAGASVDGSRKL------DCCPLAVAAAQGDLDMTSLLIERGAKLDLGAPRDVH-NRLTGSLTMAKGARPIHTAIGSGQYETFRLLMRAGADPNVANVDGFTPLMSACLVQRVGPHRASIVRELLDGGADPAMVDTYDLTAMHFAAGKGRVELIDMLAAKAPATLHRAGRDGFTPLGKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSRSRCPLNVAMEARHWNVVDVLL-DNLDPIKSSVDFGTAISSALVTKRARLLSRLVSAVGEERKQKKS-LAGMTFSSSPILHIAVAQANPLTTSVLLAAGA 325
BLAST of mRNA_C-linearis_contig9.16596.1 vs. uniprot
Match: A0A6H5L2Q3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q3_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 1.650e-17 Identity = 101/337 (29.97%), Postives = 163/337 (48.37%), Query Frame = 1
Query: 244 PLIYAVYNEKAEMVRLLLDHGAKVDSRTCCTTEGNRIPIGFTALHSAASQGKLEFVLMLLEAGASPNIQDDEGSTPLLYVTKFEDTEHH-VAISRALLXXXXXXXXXDVREGTPFHVAAGRGSIEVVDMLLDKAPSALNLTTATGATALYLAATEPGLD----YMVSHLLSRGA-TNEPVLGNGSCPLAGAVHYALESIVEVILKEGWKAVGGAI-ALPRAIHLASIKDLPRTLLMLLDAEGPDKRQSWSRCVNVDFFISPL-HVAIASDSVRAVSVLLQAGANEGVLVNRIFNQYNHQNRMIFMPRTPKRDQASKAAVRRTVARAAAFRARSWAWP 1230
PL+ A + E+V LL +GA+++ +T + +R +G A H A + GKL+ +L+LL+AGA + + +G T L+ + + VA+++ALL D H AA +G+ ++D+LL S+L+ + + + L+ V+HLLS GA G G+ L AV E IV V+ + G ++VGGA +P ++ A+ R L +LL D+ + N + PL +VA +V V VLL AGA+E V + + ++ ++ KAA+RRT+ R A+RARSW WP
Sbjct: 42 PLMVASGSGSVEVVNFLLQNGAEMEHQTW-GDDDHRF-LGMRATHWAVTSGKLDTLLVLLKAGAVYDAVNAQGETCLMNACMTDASPPTCVAMAKALLDAGADPLIEDREGQVALHHAAAQGNPNMIDLLLQAKGSSLSKKLLSHVSRWEHTPLQSALESNQVQAVAHLLSLGARATVDREGRGNL-LRRAVVKNSEPIVRVLFEAGLESVGGAARVMPDSLASAAKAGRTRLLKLLLTVGRGDRTTGY--WANYYVWGGPLLNVAAGYATVDCVGVLLAAGADERVPDDERQTAGDMIGDLLASGSKSASFRSDKAAIRRTLLRGPAYRARSWTWP 373
BLAST of mRNA_C-linearis_contig9.16596.1 vs. uniprot
Match: A0A6H5JQQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ9_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 5.890e-10 Identity = 111/409 (27.14%), Postives = 156/409 (38.14%), Query Frame = 1
Query: 244 PLIYAVYNEKAEMVRLLLDHGAKVDSRTCCTTEGNRIPIGFTALHSAAS-QGKLEFVLMLLEAGASPNIQDDEGSTPLLYVTKFEDTEHHVAISRALLXXXXXXXXXDVREGTPFHVAAGRGSIEVVDMLLDKAPSALNLTTATGATALYLAATEPGLDYMVSHLLSRGATNEPVLGNGSCPLAGAVHYALESIVEVILKEGWKAVGGA-IALPRAIHLASIKDLPRTLLMLLDAEGPDKRQSWSRCVNVDFFISPLHVAIASDSVRAVSVLLQAGANE------GVLVNRIFNQYNHQNRMI--FMPRTPKR--DQASKAAVRRTVARAAAFRARSWAWPVAVVVVGRDAAAVAAPVXXXXXPAESEIGGGGKQPFFVLGANRRPIAPLGVIIHRPRRSMWLVGLVSR 1434
PL+ A + + E+ +LL++ GA V++ + G R H A G LE +L++AG +P+ D EG T L+ V G P E + +L +P+AL G AL++A E L VS LS G + CPLA A+ E I +L AVGG +A A A + + L M+L+ G ++ + LL AGANE G + + QN + PRTP R D +A +RRTV RA AFRA SWAWP G + AA ++ G G R+ PL V IHRP R+ L ++ R
Sbjct: 20 PLVMAAVHAQTEIAQLLIERGAHVNAGVTNASMGTR-----ERSHRAPGLSGALE---VLIKAGVNPDQVDAEGWTTFLHA---------------------------VEVGNP----------EKIRRILALSPAALGRIAWDGMLALHVACNEGHLS-AVSWPLSLGTKHPKTTSRDHCPLAVAIIKGHEDIANTLLAN-LSAVGGVELAAEMAPTYAITQSRGKILRMMLNITG-------------------------EENAPGGNALLAAGANENATGQGGQRPIDVIGTIDLQNPPLSRLHPRTPTRFRDPVKEAEIRRTVERAPAFRAWSWAWP---AFEGAGCSTTAAIFGSSTCNVLNKASGQG----------RKTRTPLVVQIHRPERNKLLSRILRR 343
BLAST of mRNA_C-linearis_contig9.16596.1 vs. uniprot
Match: A0A7L0N354_9PASS (ASB3 protein (Fragment) n=1 Tax=Formicarius rufipectus TaxID=1118560 RepID=A0A7L0N354_9PASS) HSP 1 Score: 68.6 bits (166), Expect = 2.300e-8 Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 1
Query: 208 AELIEGTEYAFPPLIYAVYNEKAEMVRLLLDHGAKVDSRTCCTTEGNRIPIGFTALHSAASQGKLEFVLMLLEAGASPNIQDDEGSTPLLYVTKF 492
A+L + T A PL AV N AE+V+ LL HGAKV+ C + G+ +LH A+ QG E + +LLE GAS N +DD G TPL ++
Sbjct: 103 ADLNDVTTDATTPLFLAVENRHAEVVKFLLQHGAKVEGAHCWS--------GWNSLHQASFQGSTEIMEILLEKGASKNCRDDFGITPLFVAAQY 189
BLAST of mRNA_C-linearis_contig9.16596.1 vs. uniprot
Match: UPI001472066F (dynein heavy chain 12, axonemal n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI001472066F) HSP 1 Score: 65.5 bits (158), Expect = 2.310e-7 Identity = 45/131 (34.35%), Postives = 63/131 (48.09%), Query Frame = 1
Query: 244 PLIYAVYNEKAEMVRLLLDHGAKVDSRTCCTTEGNRIPIGFTALHSAASQGKLEFVLMLLEAGASPNIQDDEGSTPLLYVTKFEDTEHHVAISRALLXXXXXXXXXDVREGTPFHVAAGRGSIEVVDMLLD 636
PL+ A+ N+ ++ LLL AKVD N P+ TALH +A G FV +LLE+GA+PNI D + TPL + H+ + ALL GT AA G+ ++ +LLD
Sbjct: 153 PLVAAILNDHYDLATLLLRWNAKVD---------NTGPLNRTALHESAFLGLENFVYLLLESGANPNICDIKKKTPLALAAQ----NGHLHVVEALLQKGARVWCESEESGTILFDAAASGNPAIISLLLD 270
BLAST of mRNA_C-linearis_contig9.16596.1 vs. uniprot
Match: UPI001FB8374C (transient receptor potential channel pyrexia-like n=1 Tax=Penaeus chinensis TaxID=139456 RepID=UPI001FB8374C) HSP 1 Score: 61.6 bits (148), Expect = 4.640e-6 Identity = 82/325 (25.23%), Postives = 134/325 (41.23%), Query Frame = 1
Query: 244 PLIYAVYNEKAEMVRLLLDHGAKVDSRTCCTTEGNRIPIGFTALHSAASQGKLEFVLMLLEAGASPNIQDDEGSTPLLYVTKFEDTEHHVAISRA-------LLXXXXXXXXXDVREGTPFHVAAGRGSIEVVDMLLDKAPSAL---NLTTATGATALYLAATEP---GLDYMVSHL---LSRGATNEPVLGN-GSCPLAGAVHYALESIVEVILKEGWKAVGGAIALPRAIHLASIKDLPRTLLMLLDAEG---------PDKRQ-------SWSRCVNVDFFISPLHVAIASDSVRAVSVLLQAGANEGVLVNRIFNQYNHQN 1119
P+ YA + + ++R+LLDHGAK+ G+ +G T LH A + ++ V LL+ GASPN ++ ST V +T H AI R ++ D + H+AA ++E+V L+++ P+A+ N G T L +E + +V L LSR + G PL A Y L +VE++L G +H A + TL +LL + DK + SWS I+ H+A D V ++L+ + ++ ++FN + H +
Sbjct: 149 PIHYACHKQNIRILRVLLDHGAKI---------GSMDTLGNTPLHLAVNDTWIDGVSELLKRGASPNAKNAPPSTIKEVVV---ETPLHAAIRRRDTASVTLMMEHEPDLSILDGNNCSVLHLAAQTRNLELVRKLVNQ-PTAVKECNNKDKNGRTVLLAVLSEKCDEDSELLVIELIKILSRSVVDINATNYVGETPLFLASRYGLSRVVELLLSLGSDPTILTTWKQSVLHAACLSGSSDTLDILLQRDDLKNMVTVVDNDKCRAFDYAVRSWSVHCCYLLLINGEHLANIKDGVSNCELMLEHLPSASQVLKKLFNSHVHMS 460 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16596.1 >prot_C-linearis_contig9.16596.1 ID=prot_C-linearis_contig9.16596.1|Name=mRNA_C-linearis_contig9.16596.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=464bp MEKVKEDAAEGKGGLKDPDTHDRFTDLVIHGHVQEVEEMLRASGSAEGSAback to top mRNA from alignment at C-linearis_contig9:1698460..1702077+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16596.1 ID=mRNA_C-linearis_contig9.16596.1|Name=mRNA_C-linearis_contig9.16596.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3618bp|location=Sequence derived from alignment at C-linearis_contig9:1698460..1702077+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:1698460..1702077+ >mRNA_C-linearis_contig9.16596.1 ID=mRNA_C-linearis_contig9.16596.1|Name=mRNA_C-linearis_contig9.16596.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2784bp|location=Sequence derived from alignment at C-linearis_contig9:1698460..1702077+ (Chordaria linearis ClinC8C monoicous)back to top |